Ffus002001.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- ZNF341
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000083.1:1873045-1880346[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.14 12 7.4 4.9 1 23 51 73 51 73 0.97 2 11 5.8e-05 0.005 18.0 1.7 2 23 1356 1377 1355 1377 0.97 3 11 1.3e-07 1.1e-05 26.3 3.3 1 23 1383 1405 1383 1405 0.98 4 11 0.00015 0.013 16.7 2.0 1 23 1474 1496 1474 1496 0.98 5 11 0.0044 0.38 12.1 0.4 1 23 1502 1526 1502 1526 0.96 6 11 1.2e-05 0.001 20.2 0.6 1 23 1533 1555 1533 1555 0.99 7 11 0.065 5.6 8.4 0.4 2 23 1567 1590 1566 1590 0.93 8 11 0.022 1.9 9.9 0.5 2 23 1593 1614 1592 1614 0.96 9 11 0.00018 0.015 16.5 0.4 1 23 1620 1642 1620 1642 0.93 10 11 0.0092 0.79 11.1 0.6 1 23 1648 1670 1648 1670 0.97 11 11 0.21 18 6.8 2.1 2 23 1675 1701 1674 1701 0.84
Sequence Information
- Coding Sequence
- ATGTCTTTGAGCTCATTCGGAGGGGTGCTAGTGGATACACCAAGTGATTTAACAGTCCAGTCCATCCTTGCCAGCCATACCAACTTGTTGCCTCACACTTCATTTTTGCCAGGACCTACAACTGAAATAACTCTTGATGAAGATGATGTCTTCCAATGTGGTCGTTGCAAAAGAATATTCACATCATTTCATCAGTTTATGCTCCATAAACAAGAACATCAGATAGCTGTGTCTACTCCAGAACAGATTGAAGACTCTTTAACATTTGACTTGAACTCAGATCTGAACAGCACTGTAACAGACACTGTTCCAGCTGAGACAGAAGTATGCCTGCCTAGCACCCATTTATTGAAGGAAACTTGTGAGCAATTTATTTTGCCTGATAGTCTCCGGAATAATGAGGCAAGAAACACCAATGATGTTTTGGACTTTAGTACCCTGAATGATTCAACTTTTGAGGAAATATCTACTGCAACTGACCAATCTTTGATTCTCAGTGAATCAAGTGCGTTAACTTTCCCCATAGAACAAAGTATTTTGAATATTAACACTTCAGATCAGCTACCACCTGGTGGATATGTTTCAGACAACATCCCTGATCTCGACAACTCTTTGATTTCTCACAAGCTTATGCATAATGCAGACTGTTCATCTAGTACAAATGTATGGATGCAAACTCACAAAAGTGAATCTAATAGCAGCAACTTCCTCAACCCTGGTTTCTCTAGTGAGcagaatttttttattgaagACTGCGGGAAGACTTTATCAGCTCCCATAAATTTTAATAATGGTAACCTCTTAAATGAGGTTCCATATTCAGATGAAAAGCAAATGTACCTGAATGAAAATTCAAGCTCAGATTCACATACAGTAGAGAGAGGCTTGTCTGAAACAGAAGAAATGCTATTGCAAACAAGTAAAGACTATTTAAGTAGCTGTGAACTTTTAGAGGAATTAGAGAAAAACAGCCAACATCAGGTCTTAGGTGACTCAAACCTTCAAACAACTGATGTCATGGGGATTGATATATCCCTCATTACCAATACGGGTGTTGAAGACACACTTGTGGAGAGTTCAGGTCTACAACCTCAAGTTACCTCTATTGTCTCTGAGCTGAACCAACAGATTCAAGAAGATTGCAACATACTTGCAAATGAATGTCATGCATATCAATCAAACTGTAGAGCTCTGAAAGATGAATGTAATATTCAAGTCAAAAAGCACTACCCTGCATTGAATCAAAACTGTCTGAACCTGGACATAAAATGTAATGACCCTAAAACTAATTGCAATAATGTTACTAGCAGCTCTTCAAACTCAGAATGTGAATTGCATTTAAAAGATTGTAGCGCTGTAGGAGACTGCAACATTGCTACAATCCATGACAGTTCAGGACAAAAGGCTGTAGAAGACAAATGCagccctcctccttcctcaaaAAACAATCTAACATATAAAAGTCAAAAGATTACTTTGTCAGGAGGTACTGTTGACAGTTCTATTAAAGCAGACCATTTTCTTATATTAGGTAAAAGAGGTACTTTAAATGAGAACAAACATTCTAAAACTAGCACTTCAAAATTGGGTAATGCGGTATTGGATCAAGAATTTCAAACTGTCAGTTTGGTTTGTGAAAGTAAGGAGCAGGAGTTCCAAGGACTAGTGAAAACCGAGAAAGAACAAGATGCTATTTATAGACATGGTCTAGAGGCCAGTACTGATGATTTGGGTTGTGATAGCCTTGGCAATGAAACCAAGACTGATTTAAACTACTtcaagaaagaaacaaaacaggTTCATTCACTTTCCTCACAAGAAGGAGGCCCCTCTTTTGATGGAGGGAACTCTGTAGATGTCGACAATGATTTTCTACTTGCTCAAGACTGTGGATCAAATTTTGACAGAGGCAGTTCTAATTTCAGTGGCAATGACTCGAAACAAAGAAAGGACAAAGTTGTGCCCTCAACAAGTTCTATTCCAATAGTTTATCCTGCTCGTTGTAAAATTGAAGAAATTTCTACCACCAATGTGGATCCGATATGCACGGGCAATGACATCAGTGTTGCACCTGTAAAAGACTCAGTGTTTCGAAGCGCTCTCTGTTCAATTGAGCTTGGCAAACCTGTAATGTTTCAAGAATCTGTCAACATAAATGAAACTGATTTGGAAAGTGTCAATATTCTCAGTGAATCCTCTATCAGTCTTAAGAAACCAAAGTTTGGAAAATCTGGAGATAAATATTTTGTCTCAGCAGAAGCTGACAGTGCCTCTATTGGTACGTCCTTTGAAGAACAGATTTCTGATCAAGAAGATGATGTAAATACAACTAAAAGCTGCTCTGGTCATTCAGGAGATGATTACAGTCACTACAAATCAACTTGCAAGGTTAACAATAATCAGACTGTATGGTTCTTCAGCCTTGATCATGATTATGACTTGATCAAGAGTTCTGATGCTGACCATCATGAGGGAAATCTAAAAGTGGACCAACAACAACTTGATTCTCAATCTGAAAGCAGTGAAAATTCTAAAACAACTCATGAAGAAAATGCTTTCCAAATCACCAAGGAATATGATGACGTATCCAAACAAATTGAAGCAGAAAGAAGTATTATGGACTTGGCTGCCAAGCTTGATAATactaaaattgaaacaaattgtTCTATTCAACACCTAAAGGGGCACAGTGGCGCTCTCTCCGTTCTTTCGTGTGATATGTCTGATCAATGCAATGCTTTAACAAACAACAAATATAATTCTGAAAGTCCACATCCTCCTGAGCTCTACAATGACATTGTCAATGCTGACAATATTTATGTTGATATTGACTCTGATTCTACCCAACCCGAATTGAAGGCCTATAGCATTGGAGAGACTCTCATTGAGTTTGATTCTGAGCCAACTCAACCTGTTATTTTTATTGATGTTTGTAGGGATCAAACTGCTCATAGTGGCTGCAAAGACTTTGATGCTGGCTGCTCAGCAAGCAATATAATTGCTTCATCTAAATGTGATCTTGAATCTGTAGGACACTACGATACTCCTCAAGAAGAATTTTGCATTTCTGTATTTGACTGTGataaagaagagagaaagaatcTGATGGATGATAAGAAGATTTTGGAAACTGTGTGTAATGCAGGACAAGATTTTGTTGACTCTGTTTCAGTCGTGTACTCTACATATGAAGAGGAGAGCACAACCTTTAATAAGCTTTGGAGTAACGAAATCAAACTACGTAATGAAAACAATCAACCTGAGAATGATGTTAGTGCAGAGAGGCAAACCAATGATCTTACAACATGTGACTATGACGATTCTATATCAAGGAAACGCAAAGGGAACAGGGCAACATGTAAACAAGACCTCTCTAAATCTAAAAGAATAGCAACTCCAGTTGGAAACTCACGCAGTAAATCAAGCGCTTCAAGTATGTGTACCATTTTGAAGAAATCTCAACCAACTATAGGTACTAGATCATCTCAaccaaatattttgaaaaagtcTCCGAAAAAGTTACAGCCCTTGACTGACAAAAACACTTTTGCTGATAATTCTGATAGTGACCAGTGGATCCAAGATGTTGTGCATGTAAATGTAAAATCTAAAACATTTAATTCTTCTGAGCATTCATCATTTATATCATCATCAGTAATCTTACCTTCAGCTCTAAGGAGTGAAAATTGCTTTGAAGAGCTGTCAGATCAAGAAAATGCGCTGGTCAACAAAACTCGAAGCCATAGTGAGGAGAAGGAATTGTCTCTTGACATATCCCCTACTATTAAAGATTTACCATCCGGAAGATATACATTAGAAGAAGACGGTTGTCTTGACCCTGATAAAGTAGCTATGTCAGCTGTAACTGCTAAAAGCAGAAATTCATTCAGACTTGTCAAAACATCAACAACTTTAACCAATCTAACAATGCCACCAGAGAATATTACAATTTCTAAACGAGAAGCTAATGAGATTTTAAGTTTGTCTGTGCCGACTCAATCATCTAATAtaagaaaagcaaagaaaacaaGAGAAAGTGTTTTTGAACCTAGAGCTCCAAAGTTGACATGTGAATATTGTAACAAGCAGTTCGCCAAGCTATTTGATCTAAGGCAGCATCAGCGAAGTCACACAGGGGAAAAACCCTTCCATTGTAATGCATGTGGCAAATCCTTCGCTCAGAAGTCTAACTTAAAAAAACATATTCGGACTCATAAGGTGTGGCCAAAAATAGTTTCTACTCTTCCTGAAAATATTATAGAAAAGGTAAATACAAATGAAAATGCTGTGGAGGAATCAAATGTAAAAGATGTctcttcagaaaaaataaatgttGTTGAAGTACATAAAAGTCTACAATCTGCATGTGCAAGAGCCATACCAtacaagaaaaaagaagaattaATTGTCAATAATTCTTACTTCTGCCAGTTTTGTGGTATCTCGTTTGTGACTTACTCAGAGTTTAAATCACATCTGAAAAGTCATGAAGATGAGAAGGTGTACTTCTGTAGTGAGGATGAATGCAAAaaaacttttcctgattttgattCATATGTGGCTCATGTGCGCCAACATGATTCCCTAAAAACGTCTTATCCATGTCACATTTGTAATGGAACATTTAGTAGCCCTCCTGACTTGAAGGATCATCAAAAAACACATGTTCGCAATTCTGCATCCAGACGGTATCTTGTGAAGTGTCCTAAATGCAGGAGTAGGTTCTTGTCACAAGAAGCCTTGGAAAATCATTTAAGGACTGTTACTCATGATCTGCCTTGTCCTGAATGCCAAACAATTTTCTCATGTGAACGCAGTCTCCGACGTCACCTTGCAATTCATAGTACAGCCCTTCCATTTGCCTGTGATGTATGCGGCAAGAGATTTAAGACAGCTATGTACCTGAATAGTCATTCGGTAATGCACCAAGAGGATAGGCCATTTGCCTGCTCTCAATGTCCATCAAAGTTTGCTAAGAAAGATAGGTTGTCAAGACATTTATTGATTCATGCTGAACGTCTAAAGTGCCCCTTCCATTCACATCTGTCATGTAGCCGGGAATTTACACGCCCTGATAAATTGAAGTTGCACGTTTTAGCTCACTCAGAACACGACTCCAGTGACTGTTTCTTCTGCAAGAAGCAACGGTTAAAGTTTTCGGCAAAAAAAGGATACCATAATGTATATCATCAAAATTCGAAAATGACTCCATCCTTGAAAGAGAAAGCACAGGCATTTTTGGAAGTGGACAAAATAATTGACAGCACTTCAAACTTAAATTCAACCAAGAGTCAAGGGAATGGATTGTCAGAGAAAATTATTGATAATATTTCAGTGAGTGCTTCATCGGAAATGCAAAGTAATGATGTGCTTATGAGAGCAACTTCAAGTCTCAATCATAATGGAAACCTAATGTTCAAAATGTTACAAAGTAGGCGCTCTTTTGATATTATTGACAAATTGAGCTGTGAAAATATTGAGACTAATACCTTTAATTTTGACCATATTGTTTATGATAGTCTTGCTAACAGTAAGAATGTTCCTACTATTGGAATAATTGTAATGCCCCTGTCTCTCAAAGGGAACAAGGAACAAATTGTTGTAAGCAGTGAAGAAAATTCTGTTCCAGCCAGTGATGAACCTGTAGATTATCAAGTTTTGATTTCGGAGAGTAACTCCTCATATCCTGCGAACTTGTTGACTGGCTCTGAGGCTTTGATGCCTGAAGTAGACTGTGATAAGGAGGGAATTGGGGGTATAACTTTGCTCAGTACGGACCAAGACGTGGCCGTTATCTCTTCCCCAGCtgatttgtaa
- Protein Sequence
- MSLSSFGGVLVDTPSDLTVQSILASHTNLLPHTSFLPGPTTEITLDEDDVFQCGRCKRIFTSFHQFMLHKQEHQIAVSTPEQIEDSLTFDLNSDLNSTVTDTVPAETEVCLPSTHLLKETCEQFILPDSLRNNEARNTNDVLDFSTLNDSTFEEISTATDQSLILSESSALTFPIEQSILNINTSDQLPPGGYVSDNIPDLDNSLISHKLMHNADCSSSTNVWMQTHKSESNSSNFLNPGFSSEQNFFIEDCGKTLSAPINFNNGNLLNEVPYSDEKQMYLNENSSSDSHTVERGLSETEEMLLQTSKDYLSSCELLEELEKNSQHQVLGDSNLQTTDVMGIDISLITNTGVEDTLVESSGLQPQVTSIVSELNQQIQEDCNILANECHAYQSNCRALKDECNIQVKKHYPALNQNCLNLDIKCNDPKTNCNNVTSSSSNSECELHLKDCSAVGDCNIATIHDSSGQKAVEDKCSPPPSSKNNLTYKSQKITLSGGTVDSSIKADHFLILGKRGTLNENKHSKTSTSKLGNAVLDQEFQTVSLVCESKEQEFQGLVKTEKEQDAIYRHGLEASTDDLGCDSLGNETKTDLNYFKKETKQVHSLSSQEGGPSFDGGNSVDVDNDFLLAQDCGSNFDRGSSNFSGNDSKQRKDKVVPSTSSIPIVYPARCKIEEISTTNVDPICTGNDISVAPVKDSVFRSALCSIELGKPVMFQESVNINETDLESVNILSESSISLKKPKFGKSGDKYFVSAEADSASIGTSFEEQISDQEDDVNTTKSCSGHSGDDYSHYKSTCKVNNNQTVWFFSLDHDYDLIKSSDADHHEGNLKVDQQQLDSQSESSENSKTTHEENAFQITKEYDDVSKQIEAERSIMDLAAKLDNTKIETNCSIQHLKGHSGALSVLSCDMSDQCNALTNNKYNSESPHPPELYNDIVNADNIYVDIDSDSTQPELKAYSIGETLIEFDSEPTQPVIFIDVCRDQTAHSGCKDFDAGCSASNIIASSKCDLESVGHYDTPQEEFCISVFDCDKEERKNLMDDKKILETVCNAGQDFVDSVSVVYSTYEEESTTFNKLWSNEIKLRNENNQPENDVSAERQTNDLTTCDYDDSISRKRKGNRATCKQDLSKSKRIATPVGNSRSKSSASSMCTILKKSQPTIGTRSSQPNILKKSPKKLQPLTDKNTFADNSDSDQWIQDVVHVNVKSKTFNSSEHSSFISSSVILPSALRSENCFEELSDQENALVNKTRSHSEEKELSLDISPTIKDLPSGRYTLEEDGCLDPDKVAMSAVTAKSRNSFRLVKTSTTLTNLTMPPENITISKREANEILSLSVPTQSSNIRKAKKTRESVFEPRAPKLTCEYCNKQFAKLFDLRQHQRSHTGEKPFHCNACGKSFAQKSNLKKHIRTHKVWPKIVSTLPENIIEKVNTNENAVEESNVKDVSSEKINVVEVHKSLQSACARAIPYKKKEELIVNNSYFCQFCGISFVTYSEFKSHLKSHEDEKVYFCSEDECKKTFPDFDSYVAHVRQHDSLKTSYPCHICNGTFSSPPDLKDHQKTHVRNSASRRYLVKCPKCRSRFLSQEALENHLRTVTHDLPCPECQTIFSCERSLRRHLAIHSTALPFACDVCGKRFKTAMYLNSHSVMHQEDRPFACSQCPSKFAKKDRLSRHLLIHAERLKCPFHSHLSCSREFTRPDKLKLHVLAHSEHDSSDCFFCKKQRLKFSAKKGYHNVYHQNSKMTPSLKEKAQAFLEVDKIIDSTSNLNSTKSQGNGLSEKIIDNISVSASSEMQSNDVLMRATSSLNHNGNLMFKMLQSRRSFDIIDKLSCENIETNTFNFDHIVYDSLANSKNVPTIGIIVMPLSLKGNKEQIVVSSEENSVPASDEPVDYQVLISESNSSYPANLLTGSEALMPEVDCDKEGIGGITLLSTDQDVAVISSPADL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -