Ffus005394.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000289.1:1725555-1731430[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.1 5.2e+02 2.2 0.1 2 23 866 887 865 887 0.94 2 13 0.12 10 7.6 0.1 2 23 891 913 890 913 0.96 3 13 9.2e-05 0.0079 17.4 0.3 1 20 943 962 943 964 0.95 4 13 0.00039 0.034 15.4 0.3 2 23 984 1005 983 1005 0.96 5 13 0.00056 0.048 14.9 0.1 3 23 1013 1033 1012 1033 0.98 6 13 0.027 2.3 9.6 6.9 1 23 1042 1064 1042 1064 0.99 7 13 0.00044 0.038 15.2 0.4 1 23 1070 1092 1070 1092 0.92 8 13 0.041 3.5 9.0 4.1 2 23 1098 1119 1097 1119 0.95 9 13 0.0012 0.1 13.9 4.3 1 23 1178 1200 1178 1200 0.97 10 13 0.014 1.2 10.5 0.3 1 23 1206 1228 1206 1228 0.98 11 13 0.00011 0.0092 17.2 3.2 1 23 1234 1256 1234 1256 0.97 12 13 1.8e-07 1.6e-05 25.9 2.5 1 23 1263 1285 1263 1285 0.99 13 13 0.26 22 6.5 2.5 2 23 1292 1314 1291 1314 0.95
Sequence Information
- Coding Sequence
- ATGCCAACCTGCTCAGTGCCCTATTGCCTCAATACCTCGGGTAAAGACTGCCCTGTCTCTTTCCATGAGTTTCCGCATGAAACTCCACTGTTTCTGAACAAATGGATTGAAAACATAGGTAGGCCCAACTGGCGCCCTGGTCTTCGAAGTGTTGTCTGTAGTGATCATTTTGAGAAAGGCGACTTTGATCGCAAAGGACGGCTGCATATTGGTAGCTTTCCCTCCAAATTTCCCGAACCACCGACTCGCAAGAAGAAGAAGTCTGAAGAAGATGGAGGAACAGACCGAGAACCCCTGCCAAATACTCCAACACAGCTTGGAAAGCTAAATTTAACCCCTGTGGTGCAAATTGCTCCTTTAAAGCAGACTTTAAATTCAAGTCTATCAGGCGTTCCTATTGTTGTGAAGACACCACAAAATAAGAAATTAATCATAAGTAATGTGTCCTCGAACATAAGGGAACAGACCAGCACTCCTATAATTCCTGCTGCTAAGAGTGAATCATCTAACATCAGAATTATTGACTTATCAAAAGAATCTGCAGTGTCTACTGCTAATGCTTCAGAGTCATCGCCTCCTGTGGATGTGAAAGCCAACCCCACAAAAAATGTAGCAAGGAAAAATGGAAATGGCGAAAGCAGTAAATCTAATGCCACTGTCAGCAATGTTATGCCATCCTCTAAGTCTGCCAAAGATCCTAATATTTTTAAGAAGATAAAGATTACTGAGACTGATAAAGCTCCTGGACTGGTAGCCTCTGTTTTAACAAGCTATTCCTTGTTGTCATGTCGGATATGTGGATTAACCAACAAGGCAAACATAGACATATTTGGTGAACAAGGAAAAACTCTAGGACTAGCTGAGATGATTAGGAAATGTCTTTCTATTGTGGTGATGGAATCGGATACGTACCCAACTCATGTTTGCATATCATGTGTGTCACGCCTAAAAGACTTCAGTAAAATGATAACTGTCTGTTCTAGAACCAATGAAGCTCTCAGAGGAAACTCAGACTCTAAGGGTTCATTGAACAATTCTATCACTATTTCAAGAGTATCAGATTCTCAAGCTAGTGGTGATGGGAATCGAAGAGTTTTGCTTTTAGAATTGCCATTAGTAGAGGGAATTCGTGTTAAAGATATGGTTATTCAAGCTGTTCAAGAACTAAATATACGTCTACAGCCAAAGGAGTCACGGGAGACCAAGCCACAGGGTAGGATCATGTTTCTGGACCTGCAAGGAGGCACAGAGGCTTTTCCTGAGCAGATGAAGAAAGCAATTTCAATGCTGTTCCCAAATGATGCTGGAGCAAAGTCAGCTGTGAAGAGAAAAGTTGTGAATTTTGACGGGCAGTCAGCTGTGTCTGAAGAGCAGAAGAAGAAGATCCCTAAAACAACTACAAAGCAAACTCCATTTATTATTAGTTCTTCAGTCACTTCCAACAATGCAGTGTTTGTAACTACTGTTCCTGGCCGATCTCAAGCTGCTGTCACTAATACAGTCCCATCAACTCTTCCAATGCAGAAAGGTGTTGGAATAAATGCAAGGAGCTCAATTCAGGTTTCAACTCCAACAAGCTTACCACCGTTGTTAATGAAGCCTTTTACATCCATCGCACCATCTCCAGGACCTCTCATTGCTCAGGCACAACCAGTTTTGACAGCGGTGCCGGCAACATGTGTTTCGTCTTCTGCAATACGAATTACATTACCAGCAGGTTCATTACCTTCCAGTTCTGTGCCTCATTTGATTCGCCTCCCAAGCAATTTTATCAAAGTCAACCAGAAATCAGCCCAATGTACTTCTTCAACTGCTACTCCATCTAGTGTTCCCTCAGCTGCCTTACCAACATCAGTTGCAATACGAGCTAATGTTCCCTCAAGTGTGAGCTCTGACGACGATGATGTTCACTTTTGGGATGACCACTGTTATACTGAAGAGAATCCGCAGCCAAATAAACAAGATATCCCCATGCCTTCGCTGGTGCCCATCAAAGAAGGCTCTAAGGTTCCAATCAAAGAAAGCCCAAAGGTTCCTATCAAAGAAGTTTCAAAAGTGGCAATCAAAGAAAGCACAATATCAAAACAGACAATGTTACCTCAGCTTGATATAGCTCAATTAAAAGACAAGGTTATAACCAAAATTAATAACATGGGAAATCAGTTTAAACTTGGTGACAAAATAGTTGGAATAGTGCTCAGAAATTCTGACAGCCGAGAGGATATACATAAAAAATTGCAAGCAACTTTCTCCAAAGGCACCCCACTGAAAGAGTCAGGGAAAGCCATTGCCAAGACAAAAGAAAGAGTGATTCTTCCTAAAGAAAGGGCAATACTTCCCAAGGGAAGCTCTGTAATTGCTCTTCCTGGAGATACAATTATTTCATCTGAAAGTTTAGATGGTGCACAAAAATCTAAAGACCGCCCTTTGGATGTACATGCCTCTGTTGACAGCCCGTCTACGTATTTTGACAGGCGCAATGCTCGCAAGTTATCACTTAGTTTTATGTGGAGAAAATGTGGTTACTTAGTGAGCTCATACCAAAAGTTATTCACTTGGCGGTTGGCTGACAGTCCTGATACTGAACATGTACTTTCTTGTCGGGTATGTAAATTTGCCGCAAAATCCAGGGCTGATGCTGAAAGTCATCTTCAGGAACATCCTGACCTTCAATGTACAGTTTGCTGGAAGTACTTTTTAACTCCTGATAAAGTTCTTGAACATATGAATGTAATACATACTTCCTCAACTTCTGAAATATTGCGTAAAAAGTCATGTGGTACGTCGTGGAGAGTAAATACTATAAGGCGAACGGTTTTGAAACAATATCAATGCTCTCGATGTGAAAGAAGATTCAAAGCCAAAGAAAACTTAAAGCGCCACATTGCCGTCTGTAAGGAACGTACCTTAGCTGAGAAAGTCCAGGCTATATCTAGTGGAAGTCTTCTCAGTTGTCAAGTGTGCCACCGTAATTTCAATTCACCTGGGGAGTTGCAGGATCATGTTATAGTCCATACTAAGAGAACATCTTGGTTATGTGACATATGTGGTATGGTCTTGAAGTCTGCATCAAATTACAGATCTCATATTGCCCGTCATGATGAAAATGCTGCTGATTATGAATATCAGTGTGGCACTTGTAAGAAGCGCTTTAAACTAAAGCACAGGTATGAAACACATTTGAAAAAGCATGACAACCGACAGACCTTTGTTTGTTCATCTTGTGGAAAAACTTTTAATACCCTAAATGGTTTACGTCAACATGAAGTATTGCATGGAGAACGAAAACTACAATGCAAATTTTGTCCTAGCCGTTTTCATAGGCGTGATCATCTCCGCATTCATGAGGCTAGCCATACAAAGGGGAAGTCTGGTGATGGAACTAAAGACCATTCTCGACGCTCCTTTACTTGTAGATTCTGTGTAGCTAAAAGCAATGTTGTTGTAAAATTCCCTAATATGAGGGAGCTTATGAGACATTACAATGATGAGCATGCTGATGAGAGACTTAGTGGTCCTCAGGGGAAGAGATTTGAATGTGACCGATGCACCCGTTCATTTGCTAattcaacacttttaagacATCACCACATGTGGCATGCTGGTATACGTCCGTATACATGTTCCACTTGTGGAGCTGGTTTCATGATTAAAGAGAGATTGCGAAATCATGAGATGACCCACACTAATGAGCGTCCATTCAAGTGTCAAGTTTGTGGTAAAGGCTTCCGAAGCAGAAATTGCCTTAAACAACACAAAGCAATACACATGGACCCAAATGACATGTTCAAGTGCTCATACTGTGATAAAACGTTCTCACGTGTTGACAATCTGAGAACTCACACTAGAGTgcacacaggagaaaaaccATGGAAGTGCTTAAATTGCCAGAAGCAGTTCCGACTTAGATCAGAATGTTCTAAACACATCCAAGTAGCTCATAAAATTCCTGCTGAGGAAGTATTTCAGTATGTAGAAACTTTACCTGAGACTCAAGACGCCATTGATGCAGAGTCAAATTCATCTACATCAGTTATTGATGCTGCTCTGGCTGGAATCACAACTGTGCAGGACATGGAAATTCTGATTGAAGCAGATGATATGGTAGAAGATGAAGATTCTCTGTaa
- Protein Sequence
- MPTCSVPYCLNTSGKDCPVSFHEFPHETPLFLNKWIENIGRPNWRPGLRSVVCSDHFEKGDFDRKGRLHIGSFPSKFPEPPTRKKKKSEEDGGTDREPLPNTPTQLGKLNLTPVVQIAPLKQTLNSSLSGVPIVVKTPQNKKLIISNVSSNIREQTSTPIIPAAKSESSNIRIIDLSKESAVSTANASESSPPVDVKANPTKNVARKNGNGESSKSNATVSNVMPSSKSAKDPNIFKKIKITETDKAPGLVASVLTSYSLLSCRICGLTNKANIDIFGEQGKTLGLAEMIRKCLSIVVMESDTYPTHVCISCVSRLKDFSKMITVCSRTNEALRGNSDSKGSLNNSITISRVSDSQASGDGNRRVLLLELPLVEGIRVKDMVIQAVQELNIRLQPKESRETKPQGRIMFLDLQGGTEAFPEQMKKAISMLFPNDAGAKSAVKRKVVNFDGQSAVSEEQKKKIPKTTTKQTPFIISSSVTSNNAVFVTTVPGRSQAAVTNTVPSTLPMQKGVGINARSSIQVSTPTSLPPLLMKPFTSIAPSPGPLIAQAQPVLTAVPATCVSSSAIRITLPAGSLPSSSVPHLIRLPSNFIKVNQKSAQCTSSTATPSSVPSAALPTSVAIRANVPSSVSSDDDDVHFWDDHCYTEENPQPNKQDIPMPSLVPIKEGSKVPIKESPKVPIKEVSKVAIKESTISKQTMLPQLDIAQLKDKVITKINNMGNQFKLGDKIVGIVLRNSDSREDIHKKLQATFSKGTPLKESGKAIAKTKERVILPKERAILPKGSSVIALPGDTIISSESLDGAQKSKDRPLDVHASVDSPSTYFDRRNARKLSLSFMWRKCGYLVSSYQKLFTWRLADSPDTEHVLSCRVCKFAAKSRADAESHLQEHPDLQCTVCWKYFLTPDKVLEHMNVIHTSSTSEILRKKSCGTSWRVNTIRRTVLKQYQCSRCERRFKAKENLKRHIAVCKERTLAEKVQAISSGSLLSCQVCHRNFNSPGELQDHVIVHTKRTSWLCDICGMVLKSASNYRSHIARHDENAADYEYQCGTCKKRFKLKHRYETHLKKHDNRQTFVCSSCGKTFNTLNGLRQHEVLHGERKLQCKFCPSRFHRRDHLRIHEASHTKGKSGDGTKDHSRRSFTCRFCVAKSNVVVKFPNMRELMRHYNDEHADERLSGPQGKRFECDRCTRSFANSTLLRHHHMWHAGIRPYTCSTCGAGFMIKERLRNHEMTHTNERPFKCQVCGKGFRSRNCLKQHKAIHMDPNDMFKCSYCDKTFSRVDNLRTHTRVHTGEKPWKCLNCQKQFRLRSECSKHIQVAHKIPAEEVFQYVETLPETQDAIDAESNSSTSVIDAALAGITTVQDMEILIEADDMVEDEDSL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -