Ffus007047.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000335.1:773980-778263[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00096 0.082 14.2 2.1 3 23 118 138 117 138 0.99 2 13 0.0013 0.11 13.8 2.4 1 23 149 171 149 171 0.98 3 13 3.4e-05 0.0029 18.7 0.7 1 23 177 200 177 200 0.97 4 13 1.5e-07 1.3e-05 26.1 2.3 1 23 206 228 206 228 0.99 5 13 0.19 16 7.0 0.7 1 23 649 671 649 671 0.98 6 13 0.016 1.4 10.3 6.2 2 23 678 699 677 699 0.93 7 13 0.019 1.7 10.1 1.4 3 19 708 724 707 724 0.97 8 13 0.22 19 6.7 1.0 2 19 857 874 856 876 0.90 9 13 3.1e-05 0.0027 18.8 0.5 2 23 958 981 957 981 0.96 10 13 0.00013 0.011 16.9 1.7 1 23 987 1009 987 1009 0.98 11 13 2.7 2.3e+02 3.3 3.1 2 23 1317 1335 1317 1335 0.73 12 13 4.4e-06 0.00038 21.5 1.7 3 23 1343 1364 1341 1364 0.94 13 13 9.4e-05 0.0081 17.3 1.9 1 21 1371 1391 1371 1392 0.96
Sequence Information
- Coding Sequence
- ATGGCTCCTGTGGGTCGGGCTTTGACAAGCGGAAGGGGACTGTACACAATTGATGACAGTGTCGAGAAAGGCAGTGATGAAGAGCTTAAAAATGAGCCTCCTGATAGAGGCTTTCTTAAAATAAAAGAGGAGCCAGTAGACAACAGCCCTGTCTCATATTCTCCTATGAAAGCTGAAGAAGGAATAGTTATCAAGAAGGAAGAAAGTGACGACTCCATGGATGAAGATGACAAATCAGATGTTGATATCCTGGACATATTGACTGAGAAGCCAGATAATATTAGCCCTGATAAGGTTGGGGAAGTGAGTGGATGGTCAGATGACCCCAACAGAGCACTTAAATCTCTACTTTGTAAGTTTTGTGGAAAACAATTTTTTCgtgcattttattttaatttgcaCATCAAAACTCATCAAATTCCAACACCAACATCTGATAAACCTCACAAATGCCTAGAATGTGGTAAAAGCTTTGCACTGTTACAACATCTTACAGGTCATTCTAGAATCCATATTGCTGGGCGGTATTATGAGTGCCCTGTCTGCAGAAGGAAATTTACTGAGTTGTCCAACCTTACTATGCATTTGTTAAAAACTCATCCAGATGAAAAACCATATAAGTGTACAGATTGTGAAAAGCAGTTTACACAGTCTTCTGCTCTTAAGAAACATTTGAGATCTCACAGTAGTATTACGTCACAAGACGAATTGGACCGCATTGATATGCTGTTTTTCGTTAATGACAAAAATGAAAGAGAATCAGATGAGCCATTAACAAAGAAGATAAAACTTGGTAAAGATGAAAAAATCTCACCCTTTAAggaaaaattaaatgtgaaagaaagattaaaagaagaaaagattTCACCAACAAAAGAAAAGTCTGTGTTAAACAAACTAAACTCTGCTTCAGCTGAAGTGTCATTTAGTGACTCAAAAGTTAGTAAAGTACCACTCTCACCAAAAAATAGCATCAAGTCTTCTTTGCGCCAAGAAactgaaaattttccaaaaaaatcacCCCTAAGGGACAAAATCCAAAAGCTGGAAGAGTTCCCTAAAGAAAAGAAGACATCTTCACCTCAAAgaaaagctgctgctgctgctaaacTGGACTCAAAATCAGTGGACGGTGAGCTGATTATGGAAAATGCAGAAGGCCAACTTGCTGTATCCAAAGACCAATCCTCTCCCAGCAAACAAAAATCCCCATTCCAAGAAAGGTCAGAAGAGCTAGCTGAATACAAGATGCCAGATGATGTATGTGTGAAGACAGAACCATCTCCTGAGAACTGCTTTGAAATTGCTAAGATTTCCTACACATCAGATGGCTCACCACCTGTGAATGTCTTCGCCACTCCAACAAAAGATTCCTCTGCAGAAGAGGAACCTATGTTCCCTGCCGAAGCTTTACTTCTTCACATCAAAGAAGAATGCCCAGATGAATCTGAGCATACTCTAACCCAAGAAACATCTATTTCCTCCTTAAATGAACTACCAGAAGGTCCAAGTTCTGCTTGCACTGAAGGATGGACAACAGAAGAAAATTTAATGATTGCTCAAAGAGAAAGTGTTGCTGTTTTTAATGATTCCTTACTTATCACGAAGAGAGCAGAACTAGCACTAGTTAGCTGTTTGAAAGCCAATGAAACAAAGCTTTCTGGACCCGAACTGGAAAGTGAAAACCAGAGTGGCAAAGGGAAAGTTACCAAGCGTTCGCTGAGTAAAGTCATGTCTGCCTCTGATGCTCGATGCCTAAAACCTCAGGATAGCTATGACAACACAGATAGCTCGAGCCAAACAGAATACAGTCAGAAAGTGCCAAGACCAGCCTCTCTCAGTGTCTGCAACTCTATTGGAGGCACAAGTTTGGGCAGCAATAAATTTGACAAGAAAGAGTTGCGACCATGTATAGAAAAGCCTGAAGGTGCCTGTGAAGAAAGGTATAAATGTCTCCGGTGTGATATATTTTTGGACTCTGAAGAGCAACTTCATGAACATCTAATGGAGCACACAGGTGTCAGGCTTTGTGAATGTCGATTTTGTGGAAAGGATTTTACTTCAATGACCTCTTTGAAACGCCATCTCTACCATCACGTTGCTGGGTCTATCCCTCAAGACTGTACTAGATGTGGCAAATTTTTCTCTACTTTCACAGATTTAAAGGACCATTGTGCTAGCAAAAGGTGTGATGCTTCTGACAATAATTTCCGTTTTAAGTGCTTCCGATGCAAGAAACACACTCCATCTTTAGAAAGACTGAAATTTCATCTCTTGTCACAATGCAATGAAGACCCAGTAAAATATTATATTCCCAAAAAGCAGGAAAACATTGTGTCCATAAATTCTATTGTCAATGAAGTTGCCAATGGTGGGTCTGACAAGATTGATGGTGGTTCTGCTATTGATAATTGCACAGATGAGTGGGTCAatcaaaaatttgaaaacagTGAGTACCTTACTCAAGAGGACATGAAAGAGTTAAATTTAGAGGGCACTGATTTAGAAGCATTAAAAGTTTTAAATGAACTTGGCCCTTCTGATAGAGGTAAAGAGTGTTGGAATTTGCAGTGCGAGAAATGTggtcaaaaatttgaaaatgctGAAAAAGCTAAGGTCCATTGCAGACTAGGATGTGATATAAAGCCTGAAAGTAATCAAGAGTTTGATAGTAAACATGATAAAGAGCACGAGTTAGATACAAAATCTGCAAAGGAGATGGAAGCAGAAGTTGTTAAAATGAAGGTGGTTGTGGAAGAGGACGAAGACCTTCAGTGCTACTTAAATTGTGCTGTGTGTGGGAAGGAAGTTGCTGGCGTTGAAAGAATGTTGCTTCATATCAAAGACCACATAAATCAACGGAATACACTAGAGTGCCCTGTATTGAAATGTGGGAGATTTTTCACCAACCCAAAAGATTTTAAATTGCATCTCAAGACTCATACTGCACATAAACCGTACAAGTGTTCAGAATGTGGCAAGCGATTCTTTTTGAGAGAAAACTATGAGAATCATGCTCAACGTCATGGTGTGTTAAAGCATTGGAGTTCATTAAGCACTAATGAGAAAACAGGAAAAGTTTCAGGTAATACCAGAAGTCCTATCACAATTGAGTCAAGCATTAGCAATTTGGAAGTTTCTGAGGCAGATGTTGACAAAAAGCAAAGCAAACCTTCAAATAATAGTTCTCAGACAAGAAATCGCACTGACATGCAATCAAAGGAAAATCGGAAACAAGATATTGCTCTCAATCTTCATAAGAAATCAACCTTCAATGGACCATCTTCCAAAGTGAAGAAGTCTGTACCAGCTTTGAATAAGTCTGTGCCTCATGTTAATGCAACTGCTCCTCTCATGAGCAAACCTCGGCCCTTAGTGAGCAGACCCGCTCCAACCATCAACAGACCTTCACCAGTTATGAACAAACCCACTCCCTCTGTGAATAGAATTTCACCAAATGTCAGTGTGACGTCACCACCTCCAAATGAGAAGCCATCACCACCAACCATCAAGTCTTCACCCCCCACTATTAAAACTTTGCCACCTGTGAGTAGACATATACCCACCACCAGCATCATAAGCACACCCATACCCATTGTTACCCGACCTATACCAGCACTGCTGTCTTCAAGTGCTGCTGTCATTAGACCTGCATCTATTCTGCAAGGTGCGCAGTCTATCGTAGGTAGAATTTCTCACGCTTCTGGAGGGTCATTGTCAGTTACTCCACAAGGGATATTTACTGTTGGAGCTCCTAGATCTTTCACAATATCTCCACCAAGTAACAGCAAGCCTACATTTACAATGGTCCGGACAAGACAAGAACTGACTCAAAAAGAGATAAGCCAGACTCGTGCTCATCCCCCTTCTTACTATAGACTATCTGATCAGGCTAAAGCTACAATTCAGGCATCAAACGCAGAGCTACGGAAGTACCCCCGATCAGGCAGATGCGAAATTTGTAAAAAGACTTGTTCTCGTCTTGACAAACACATGATGGTGCATCTTAACCAGAAACCGCATTTGTGTCCTATTTGTCCGCAAGCATTCAGGCAGAGTGAACACCTTAGGCGCCACATCAGAGCTAGGCATGAGGGCAATCACCGTCAGTTTGAGTGTCCGCAGTGTCACAAAAGGCTGACAAGAAAAGACAAACTTAAAGAGCACATGAAGAACTGTGGTACTCGCCCATATCCAGAAAGTTACTCCCCTACTTTGAGTGATAGTTTATTTGACATGATTCCTGGTCCTTCTGAGTCTCTCCTTCAAGGCCATACAGTGTAA
- Protein Sequence
- MAPVGRALTSGRGLYTIDDSVEKGSDEELKNEPPDRGFLKIKEEPVDNSPVSYSPMKAEEGIVIKKEESDDSMDEDDKSDVDILDILTEKPDNISPDKVGEVSGWSDDPNRALKSLLCKFCGKQFFRAFYFNLHIKTHQIPTPTSDKPHKCLECGKSFALLQHLTGHSRIHIAGRYYECPVCRRKFTELSNLTMHLLKTHPDEKPYKCTDCEKQFTQSSALKKHLRSHSSITSQDELDRIDMLFFVNDKNERESDEPLTKKIKLGKDEKISPFKEKLNVKERLKEEKISPTKEKSVLNKLNSASAEVSFSDSKVSKVPLSPKNSIKSSLRQETENFPKKSPLRDKIQKLEEFPKEKKTSSPQRKAAAAAKLDSKSVDGELIMENAEGQLAVSKDQSSPSKQKSPFQERSEELAEYKMPDDVCVKTEPSPENCFEIAKISYTSDGSPPVNVFATPTKDSSAEEEPMFPAEALLLHIKEECPDESEHTLTQETSISSLNELPEGPSSACTEGWTTEENLMIAQRESVAVFNDSLLITKRAELALVSCLKANETKLSGPELESENQSGKGKVTKRSLSKVMSASDARCLKPQDSYDNTDSSSQTEYSQKVPRPASLSVCNSIGGTSLGSNKFDKKELRPCIEKPEGACEERYKCLRCDIFLDSEEQLHEHLMEHTGVRLCECRFCGKDFTSMTSLKRHLYHHVAGSIPQDCTRCGKFFSTFTDLKDHCASKRCDASDNNFRFKCFRCKKHTPSLERLKFHLLSQCNEDPVKYYIPKKQENIVSINSIVNEVANGGSDKIDGGSAIDNCTDEWVNQKFENSEYLTQEDMKELNLEGTDLEALKVLNELGPSDRGKECWNLQCEKCGQKFENAEKAKVHCRLGCDIKPESNQEFDSKHDKEHELDTKSAKEMEAEVVKMKVVVEEDEDLQCYLNCAVCGKEVAGVERMLLHIKDHINQRNTLECPVLKCGRFFTNPKDFKLHLKTHTAHKPYKCSECGKRFFLRENYENHAQRHGVLKHWSSLSTNEKTGKVSGNTRSPITIESSISNLEVSEADVDKKQSKPSNNSSQTRNRTDMQSKENRKQDIALNLHKKSTFNGPSSKVKKSVPALNKSVPHVNATAPLMSKPRPLVSRPAPTINRPSPVMNKPTPSVNRISPNVSVTSPPPNEKPSPPTIKSSPPTIKTLPPVSRHIPTTSIISTPIPIVTRPIPALLSSSAAVIRPASILQGAQSIVGRISHASGGSLSVTPQGIFTVGAPRSFTISPPSNSKPTFTMVRTRQELTQKEISQTRAHPPSYYRLSDQAKATIQASNAELRKYPRSGRCEICKKTCSRLDKHMMVHLNQKPHLCPICPQAFRQSEHLRRHIRARHEGNHRQFECPQCHKRLTRKDKLKEHMKNCGTRPYPESYSPTLSDSLFDMIPGPSESLLQGHTV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -