Basic Information

Insect: Frankliniella fusca
Gene Symbol: prdm10
Assembly: GCA_029379305.1
Location: JAHWGI010001376.1:1439016-1443270[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.1 93 4.6 0.0 2 23 236 257 235 257 0.94

2 14 0.33 28 6.2 2.0 2 23 269 290 268 291 0.95

3 14 6.8e-06 0.00058 20.9 1.7 1 23 496 518 496 518 0.98

4 14 0.014 1.2 10.5 0.7 1 20 522 541 522 543 0.94

5 14 0.00013 0.011 16.9 0.6 1 20 549 568 549 571 0.95

6 14 0.044 3.8 8.9 3.9 1 21 575 595 575 596 0.93

7 14 1.5e-05 0.0013 19.8 0.3 2 23 608 629 607 629 0.96

8 14 0.0012 0.1 13.9 0.1 1 19 669 687 669 689 0.95

9 14 0.00027 0.023 15.9 2.1 1 23 696 718 696 718 0.98

10 14 6.8e-05 0.0058 17.8 0.7 1 23 723 745 723 745 0.96

11 14 3.2e-05 0.0028 18.8 1.0 1 23 751 773 751 773 0.98

12 14 0.00014 0.012 16.8 6.0 1 23 779 801 779 801 0.98

13 14 0.0012 0.1 13.9 3.1 1 23 807 830 807 830 0.97

14 14 4 3.4e+02 2.8 6.0 1 23 835 858 835 858 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.1	93	4.6	0.0	2	23	236	257	235	257	0.94
2	14	0.33	28	6.2	2.0	2	23	269	290	268	291	0.95
3	14	6.8e-06	0.00058	20.9	1.7	1	23	496	518	496	518	0.98
4	14	0.014	1.2	10.5	0.7	1	20	522	541	522	543	0.94
5	14	0.00013	0.011	16.9	0.6	1	20	549	568	549	571	0.95
6	14	0.044	3.8	8.9	3.9	1	21	575	595	575	596	0.93
7	14	1.5e-05	0.0013	19.8	0.3	2	23	608	629	607	629	0.96
8	14	0.0012	0.1	13.9	0.1	1	19	669	687	669	689	0.95
9	14	0.00027	0.023	15.9	2.1	1	23	696	718	696	718	0.98
10	14	6.8e-05	0.0058	17.8	0.7	1	23	723	745	723	745	0.96
11	14	3.2e-05	0.0028	18.8	1.0	1	23	751	773	751	773	0.98
12	14	0.00014	0.012	16.8	6.0	1	23	779	801	779	801	0.98
13	14	0.0012	0.1	13.9	3.1	1	23	807	830	807	830	0.97
14	14	4	3.4e+02	2.8	6.0	1	23	835	858	835	858	0.94

Sequence Information

Coding Sequence: ATGACGGGAGACATTAACCCTGACCGGCCCAGGTCCAGGACTCATAACTTGCAAGTGTATGTTTGCAGTGTGTGCGGAGGAGACCATGAAACTATTGACTGCTCAATTGTTCAGAATCTCAAAGTGGTTCATGACACTCAGATACAATCTCGTGCAAGGCAAACTTTACCCAAGGACTTCATAGTAAAATCTCTAGCTGATGGAAGTACCACTGTGATTACAAATGTAAGAATTGACCAAGGAACCCAATTTGGTCCATTTCAAGCCCCTCTTTCAATTGACTTGCCACCCGCTGTCTCATTCCCCCTCAAAGTTTTTGGCAAGACACTGGATGAAGGCTATTTCTTAGATACAACTGATGAAGAATGTTGCAACTGGATGTGTCTCGTAGCTTCGGCTTCTAACTCTAAAGAACAGAATCTGATATGCTATGATGTCaagcaaagcattttctttgctACAACAAGAGATGTTGAACCAGGACAGGAATTACGCCTGTGGTATGCATTGTATTATGGGTTAAAGCTTCAGGCCCTACCTCTGTGTGTTGAAGCTATTGGAGAGGGGGATTTTCTTGATTCGGTTGAGGAAGTTCAGGAGAGGGCAAATGATGGGAACAACATATTTGGGAAAGCTTCTCCCAAAACATTAACTCAACACCTACCAGCTCATGCCCTTGGAGCATCTGGACAAACGGAAGAATGGGTGTGCAAACTTTGTGGGGCTCAAGAATCAAATGTTGCCAGTTATGCTCGCCACTTAATGACGCATTATCGCCAACCAGTTGATAACATTCAGCATTCACAATGCTCTTTCTGCTTTCGTGTTTTTTTAAGTAAAGCGGTTTTGGAAAAACATGTTCTGAAACATCATATATCTCATATTCATAAATCAAAAACTGACTCCTTAGAAACAGACAACAGTACCTGCATCAAAAGTATTGAAAGACCCAGACTTGATAAAATCTGCCTTTGGGATTCAAACAAAATTAATGAGCCAGAAATTAAATTGTCAGATAAAATATCAGATGAAAGTCAAGTTCTTTCTCTTGAGCATTTCAAAAGTGATACAGATACACAATTTGATGAAACAAAATTGAACTCTAGCTGTGAGAAACAGCTCATGCAAGATCCTAATGAAAGAGATGGTGGTCATACGGCCTGTGCCAGGAAGACGTCTCATAAATATAATAGACCAGGGGACCAAAATTTCAttcagaaattaaaaatagaCAAAGAACATGATATAAATCCTCTACCATCATCACAGGATAGTGAAAGAGAAAAATTGGTAGCTCATTCAACTGATGGGGACAGTTTCTCCACATCATTTAAACTTAGTTCATCACAAGCTATCGATGTTGCTTTGGAAAATGGAGAACCTGTAACATTTATTATGGTCCAGTCTACTGAAAATAACTTATCATCTACTGAAGGAGATAACGTCGAGAGACATCAAGAAAAGtcggaaaatgaaaatttgcaCTACAACTGTGATATATGTCAGAAATCTTTCACGAGGGGGGCATATCTTTATCGTCATCTCCGCAAACACACTGGTGAATTCACCTGTGTAACCTGCTTGGCTGTGTTTGCCCGCAAAGAAAACTTGAAGACTCACTCCTGTATTAAACCAAAAGAGTCGTTTCCTTGTTCTATGTGTGGAAGGAAGTTTTCAGCTAAAAAGTATCTCCAGAGGCATATTCCTCTGCACACAGGCGAGTTTGCATGTTCAGAATGTAATCGCCACTTTGTATCTAAGCTTTCTCTGAAGTATCACAGGTGTAATTGTGACAAGAATCAATCTAGAAGTGGGTCCATTAGTTGTGCAATGTGTGAGAGAACATTTTCCTCTGAATCTAAACTTAAAGCTCATCTCAGAATTCATTATGATCTAAAATCAAAACCAGGGCCTTTTAAATCATCACAAAATATTCACAGGCAAGCAAGAAAGAAAGATGTTAATActaaaagcaaaaaaaataaaatacctgagggaaaattatttatttgtgaGATTTGTGGAGCAATATTCAAAAGCTCATCAAGCATGAAGACCCACTGGTTTTGTCATGGAGAAAGAAAGTTTGAATGCAGCATTTGTGAAAAAAGGTTTCACCGCAAAGATGTATTACAAGAACATTCAAGAGTTCATGAGGAAGCAAATTTTCCCTGTGAGGTATGTGGCAAAAAGTACAAGACCAAAAAGTCTCTTTATGTCCATTCCCTTATTCATGGAGGATCAAAGAGATTTTCTTGTAGTGTATGTGCCAAGAGCTTTTTCCAGAAAGGAAATCTCTTAAAGCATGCGCAAACTCATACATCATCTAGAATGTATTGCTGTCAGTATTGTAAGAAATCATTTTCTTCAAAGGAGTATTTTAGCATTCATCAACTGACACATACTCAGGGAAAAATATACCGTTGTGATGAGTGTAACAGAGGCTTCGTGAAGAAGCATTTACTGGACACGCATCGTCAATCATTTCATTCAAATCGTGGATTTTTATGCAAGTTCTGCAACAATATAGTTCGTCATAGACATTCTATAAGACGACACCTACAAAAAAGTCATGGTAGTCTTCGTAATGAGTGGTCAATTCCTGGCTTTATTGATTGCTTACAAGTCGAACTTCCATTGAACCTCACGACCTGTTTGGGTGATGCAAAATTAACCCCTAAAGAACAACAGGAAAGAAGTAATCAAATAGAAATTTTAAGAAGAAAACATTTTCAGAATAAGATGTTTTTCAGTTTAGATTCAACATCTGAGTTTACATTTGCCTCTCCTCCAGTGCCTCAATTAGATCAATTTTCTTTGGATGATCCTGTAGAAATGCTGAAACCATCCCATCAGTTAACACTCCTTAATAACTTCCCAGCTGGCAATGAGGCAGATAAATTTCAAGCAGCTAGCCAACTTGATATGGCTTCAGAGAATGTTGAAGATGCAGAAAATGAGGTTGTTTTCACATTAGTGAATGAAGAAAGTTCTCATTACAACTCAAGCAATGTAGCCCCTTTTCTCAGCTCGACTTCCTTAGAAAGTAGTATTACTGACTTTGATTCAGGTACCACTTTTCTCATGGAAAATGGACATCACATTGACAGCATCCTGTTATATGTTGTTGAAGCTCACCATGGAGAAGATTGCAATTCAGAGGATGTTAACATGGCGCAGTAG
Protein Sequence: MTGDINPDRPRSRTHNLQVYVCSVCGGDHETIDCSIVQNLKVVHDTQIQSRARQTLPKDFIVKSLADGSTTVITNVRIDQGTQFGPFQAPLSIDLPPAVSFPLKVFGKTLDEGYFLDTTDEECCNWMCLVASASNSKEQNLICYDVKQSIFFATTRDVEPGQELRLWYALYYGLKLQALPLCVEAIGEGDFLDSVEEVQERANDGNNIFGKASPKTLTQHLPAHALGASGQTEEWVCKLCGAQESNVASYARHLMTHYRQPVDNIQHSQCSFCFRVFLSKAVLEKHVLKHHISHIHKSKTDSLETDNSTCIKSIERPRLDKICLWDSNKINEPEIKLSDKISDESQVLSLEHFKSDTDTQFDETKLNSSCEKQLMQDPNERDGGHTACARKTSHKYNRPGDQNFIQKLKIDKEHDINPLPSSQDSEREKLVAHSTDGDSFSTSFKLSSSQAIDVALENGEPVTFIMVQSTENNLSSTEGDNVERHQEKSENENLHYNCDICQKSFTRGAYLYRHLRKHTGEFTCVTCLAVFARKENLKTHSCIKPKESFPCSMCGRKFSAKKYLQRHIPLHTGEFACSECNRHFVSKLSLKYHRCNCDKNQSRSGSISCAMCERTFSSESKLKAHLRIHYDLKSKPGPFKSSQNIHRQARKKDVNTKSKKNKIPEGKLFICEICGAIFKSSSSMKTHWFCHGERKFECSICEKRFHRKDVLQEHSRVHEEANFPCEVCGKKYKTKKSLYVHSLIHGGSKRFSCSVCAKSFFQKGNLLKHAQTHTSSRMYCCQYCKKSFSSKEYFSIHQLTHTQGKIYRCDECNRGFVKKHLLDTHRQSFHSNRGFLCKFCNNIVRHRHSIRRHLQKSHGSLRNEWSIPGFIDCLQVELPLNLTTCLGDAKLTPKEQQERSNQIEILRRKHFQNKMFFSLDSTSEFTFASPPVPQLDQFSLDDPVEMLKPSHQLTLLNNFPAGNEADKFQAASQLDMASENVEDAENEVVFTLVNEESSHYNSSNVAPFLSSTSLESSITDFDSGTTFLMENGHHIDSILLYVVEAHHGEDCNSEDVNMAQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -