Basic Information

Insect: Frankliniella fusca
Gene Symbol: ham
Assembly: GCA_029379305.1
Location: JAHWGI010000424.1:187798-245145[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 6.9 5.9e+02 2.0 0.1 3 23 200 221 198 221 0.91

2 9 0.22 19 6.8 0.1 1 23 228 251 228 251 0.90

3 9 1.2e-08 1e-06 29.6 1.1 1 23 265 287 265 288 0.96

4 9 8.9e-06 0.00076 20.6 2.5 1 23 294 316 294 316 0.95

5 9 5e-05 0.0043 18.2 5.0 1 23 322 344 322 344 0.99

6 9 0.0012 0.1 13.9 1.3 2 21 352 371 351 372 0.95

7 9 2.4e-09 2.1e-07 31.8 1.1 1 23 828 850 828 850 0.99

8 9 9e-06 0.00077 20.6 3.5 1 23 856 879 856 880 0.97

9 9 6.6e-05 0.0057 17.8 3.0 1 23 885 907 885 907 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	6.9	5.9e+02	2.0	0.1	3	23	200	221	198	221	0.91
2	9	0.22	19	6.8	0.1	1	23	228	251	228	251	0.90
3	9	1.2e-08	1e-06	29.6	1.1	1	23	265	287	265	288	0.96
4	9	8.9e-06	0.00076	20.6	2.5	1	23	294	316	294	316	0.95
5	9	5e-05	0.0043	18.2	5.0	1	23	322	344	322	344	0.99
6	9	0.0012	0.1	13.9	1.3	2	21	352	371	351	372	0.95
7	9	2.4e-09	2.1e-07	31.8	1.1	1	23	828	850	828	850	0.99
8	9	9e-06	0.00077	20.6	3.5	1	23	856	879	856	880	0.97
9	9	6.6e-05	0.0057	17.8	3.0	1	23	885	907	885	907	0.99

Sequence Information

Coding Sequence: atgcagcagcagctgcaccacctgcAGAGCCAGCGGCAGCCGCACCCCGTCGCCCGGCTGCGCgacgaggccgtggccgtggcgccggccgtggcgcagctggcgccgccgctgctgccgccggagcTGGAGCTGCGCGGCGACGCCGGCATCTGGGCGCGCCAGCCGCTCGCCAAGGGCGCCCGCTACGGGCCCTTCGTCGGCAAGTGGACGCTCGAGCCCGCGGACCTGCGCTACGCCTGGGACGTGAGGGTGGCCGGCAGTGCCATCCGCTGCTACAACGACGCGACGGCCGAGCGCTCCAACTGGCTCAAGCTGGTCCGCTCCACCTACAGGCCCGAGGCGCGAAACGTGCGCGCCTTCCTCCACGGCGGACAGATCCTCTATGAGACGACGCAGGACGTATCGGCGGGCACCGAGCTCCTGCTGGGGCCGCGGGAGCCCCTACTCCTGGACATGCTGACCGCCGACGGCGGCACCCCGGAGGACCGCAGCGACCGCGAGTCGGCCTCTCAGCACTCTGGCACCGGCGGCGACGACCGGGAGGACATCGAGGAGCGCGACGAAGTCGATGACGAGGACGACAGCGACACTCATTGCGTCGTCTGCGCCAAGTCCCTGCCCGACCTAGAAAAACTCGACGAGCACCTGGTGAGCGCCCACAGCTACCGCGCCGACCAGTACCGGTGCGGCTCGTGCCCGCGGGCCTTCTCCTGGCGCCCGGCGCTCTACCGGCACAAGGCGCTCGCGCACCCGGACGCGCGGCCGCTCAGCGACCCGGAGGCGCGCCGCTACCCCTGCGAGAACTGCTCCAAGGTCTTCTCGGACCCGTCCAACCTCCAGCGGCACATCCGCTCGCACCACGtgggcgcgcgctcgcacgcCTGCTCCGAGTGCGGCAAAACCTTCGCCACCTCGTCCGGCCTCAAGCAGCACACCCACATCCACTCGAGCGTCAAGCCCTTCCAGTGCGAGGTCTGCTTCAAGGCGTACACACAGTTTTCCAACCTGTGCCGGCATAAGCGCATGCACGCGGACTGCCGCATGCAGATCAAGTGCACACAGTGCGGCCAGGCCTTCAGCACGGTCACCTCCCTGCACAAGCACAAGCGCTTCTGCGACTCGAGCGGCTCCCCGGTCCAGGCCTCCACCGGCCACTCCGGCGCGTCCacccccggcggcgccggcggcgccatggcgcagcagcagccctccccGTTCCTCATGTACACGCGGGCGCCCTTCTACCCCGGCGCCTTCTACCCGGGCCTGTTCCAGTCGTCCGCCGGCGGCcacggcccgcacggcccgccgccgggggccggcgccCACGCCGCCTCCTTCCTCGGCTCCCCGCTGCAGCTGTTCGCCCAGCACCAGAAGCTGCTGGAGAGGgagcgcgagcgggagcgggatcGGGAGCGCGCCGACTCACCGACGGCCCTCACCAAGGGGGGCATCCCCTCGCCGACGGCGTCCAAGGACTGGatgacgccgccgcccgcgccgctacCGCCCTCCCGCGGACAGCAGCACCAGAGCAGCAAGGTGTCGCCGCCCGTGGCGGAGGAGGCCGCCAACAAGGAGACGCCCTCGCCGGCGCGCCCGCTCACCAGCGCCAAGGCGTACCAGGGCGCGTACTCCGACCACCGTCACCCCAGGGCTGCctccgaggacgacgacgacgaagacgGCCGCGAGGGCCGCCGTCACCCGAGCCGcagtcgcagccgcagccctaTGGACGACGGCCGGACGAGTAGCCGGCGGTCGCGGtgcgaggacgacgaggacgagcaggagcatGCGCTCGACCTCAGCGTCGGCGTCAAGCGGCGGCCTCTCCCGTCGCCCgggtcggcctcggcctcggccgacGAGGGCGACGGGCTACGGAGCCAGAGAAGCCCGCTCGCCCTGCGTCGGGCCTCGCTCACCCCGTCGCCCAAGCTCACGGCCACCACGCCGCGGACGCCACCCAACTCGGTCACCAGCCAGGCCGACAAAGAGATCAGCTCGACGACGGCCTCGTCGCCGACCGCCGCCCTGTCGCCGCCCTcgggcgcgggtggcgcgggccACCCTCTGGGCAGCACCATGGCCTACCCGCGGCCCATCCACCCCATCTTCCTGGAGGCCATGGGCTACCGGCCGTCCCCTCCCTTCTCTGGCTTCAACCCGCCGGGCTCCAACTCGTCCTCCGCGGCGGACCGCCTGCtgcacccgccgcccccgcccttcggcccgccgcgccactacCCGTTCCTCGGTCCGCTAGCCAACGGGCTCAACGGGCTGGCCAACGGGCTGGCCGGCAACGGCAACCGGCCGCCGTTTGACCACCTCCTCCGGGCGCCGCTGGGCGACTTCGGGTCGGGGAAGCCCTTCCAGGACGTGCTGGTTGGCAGTGCGGGCATGGGTCCGGGCGCCGGCGGGCAGACCGCTGTGCCGCCGCAGACTGGGAACAAGCTCAAGGACAGGTACTCGTGCAAGTACTGCGGCAAGGTGTTCCCGCGGTCCGCCAACCTGACGCGCCACCTGCGCACGCACACGGGCGAGCAGCCCTACAAGTGCAAGTTCTGCGAGCGTTCCTTCAGCATCTCGTCCAACCTGCAGCGGCACGTCCGGAACATCCACCACAAGGAGAAGCCCTTTAAGTGCCCGCTGTGCGCGCGCTGCTTCGGCCAGCAGACCAACCTGGACCGCCATCTCAAGAAGCACGAGACGGACGATGGGTCGGTGGGCGTTGCGGATAGTCCTGGAAGCTCGAATGAGAACGAGCGTGAGGACTGTTTCGATGAGATTCGCAGCTTCATGGGCAAGGTGACATACTCGGGGAacgacccccttcccccgcaccTCTACGCCGCCACCGCCCAGGGGCTGGCGCTGGGCCTGGCCCACCACGCAGCGCAGAGCATGCACAGCTTCAGGGATGACAGCCATGACAAGGACAGTCACAGGGACCGGGACCGAGACCGGGACGAGCGACGCAGTCCTCAAGACTCGCCCCTTGCTATGGTAGTCCAGAAGGCTCTTGCCTTTGACAGCTTGAGCAGTCTAGCCAAAGCTGACCTTGCCCTTAACAACAACAACGCTGAGCAAGAGGGCCTTCAGGTGTCCACTTAG
Protein Sequence: MQQQLHHLQSQRQPHPVARLRDEAVAVAPAVAQLAPPLLPPELELRGDAGIWARQPLAKGARYGPFVGKWTLEPADLRYAWDVRVAGSAIRCYNDATAERSNWLKLVRSTYRPEARNVRAFLHGGQILYETTQDVSAGTELLLGPREPLLLDMLTADGGTPEDRSDRESASQHSGTGGDDREDIEERDEVDDEDDSDTHCVVCAKSLPDLEKLDEHLVSAHSYRADQYRCGSCPRAFSWRPALYRHKALAHPDARPLSDPEARRYPCENCSKVFSDPSNLQRHIRSHHVGARSHACSECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCTQCGQAFSTVTSLHKHKRFCDSSGSPVQASTGHSGASTPGGAGGAMAQQQPSPFLMYTRAPFYPGAFYPGLFQSSAGGHGPHGPPPGAGAHAASFLGSPLQLFAQHQKLLERERERERDRERADSPTALTKGGIPSPTASKDWMTPPPAPLPPSRGQQHQSSKVSPPVAEEAANKETPSPARPLTSAKAYQGAYSDHRHPRAASEDDDDEDGREGRRHPSRSRSRSPMDDGRTSSRRSRCEDDEDEQEHALDLSVGVKRRPLPSPGSASASADEGDGLRSQRSPLALRRASLTPSPKLTATTPRTPPNSVTSQADKEISSTTASSPTAALSPPSGAGGAGHPLGSTMAYPRPIHPIFLEAMGYRPSPPFSGFNPPGSNSSSAADRLLHPPPPPFGPPRHYPFLGPLANGLNGLANGLAGNGNRPPFDHLLRAPLGDFGSGKPFQDVLVGSAGMGPGAGGQTAVPPQTGNKLKDRYSCKYCGKVFPRSANLTRHLRTHTGEQPYKCKFCERSFSISSNLQRHVRNIHHKEKPFKCPLCARCFGQQTNLDRHLKKHETDDGSVGVADSPGSSNENEREDCFDEIRSFMGKVTYSGNDPLPPHLYAATAQGLALGLAHHAAQSMHSFRDDSHDKDSHRDRDRDRDERRSPQDSPLAMVVQKALAFDSLSSLAKADLALNNNNAEQEGLQVST*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732691; iTF_00733399;
90% Identity: iTF_00732691;
80% Identity: -