Ffus015235.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella fusca
Gene Symbol
-
Assembly
GCA_029379305.1
Location
JAHWGI010001033.1:1105785-1108687[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.11 9.3 7.7 4.7 2 23 178 199 177 199 0.97
2 16 0.15 13 7.3 0.9 3 23 211 231 209 231 0.98
3 16 0.00012 0.01 17.0 0.7 1 23 237 259 237 259 0.98
4 16 0.022 1.9 9.9 0.0 1 20 262 281 262 283 0.94
5 16 0.0071 0.61 11.4 0.3 1 23 495 517 495 517 0.98
6 16 0.0055 0.47 11.8 1.3 2 23 524 545 523 545 0.97
7 16 0.0048 0.41 12.0 0.2 3 23 556 577 555 577 0.94
8 16 0.011 0.99 10.8 1.0 1 23 581 603 581 603 0.97
9 16 0.0011 0.098 13.9 1.2 2 22 610 630 609 632 0.85
10 16 0.0038 0.32 12.3 4.0 2 23 636 657 635 657 0.97
11 16 0.00086 0.074 14.3 0.1 1 23 664 686 664 686 0.97
12 16 0.046 3.9 8.9 0.4 1 23 692 714 692 714 0.94
13 16 8.5e-06 0.00073 20.6 0.8 1 23 720 742 720 742 0.98
14 16 4.1e-05 0.0035 18.5 4.8 1 23 748 771 748 771 0.98
15 16 0.00077 0.066 14.5 1.7 1 23 777 799 777 799 0.95
16 16 0.024 2.1 9.8 0.2 1 23 805 828 805 828 0.93

Sequence Information

Coding Sequence
ATGAGTGACACCATCGGCAGTCACTGTTTTGTATGTGACAAAGATTTATCTCATTCACGAGATAATAATGCTCTTTTGCTGTCAAATCACACTGAATATTCCCGCACCGGGCTTCCTTCAAAAATAGGGCAATTAATGGGTGATGGCTTTATGGTCGTTGTAACAGCTTGTGATGAAGCTTGTACTCGATGCTATGATCTCATAAATTTATTGGATAAACTTGAAGTGGATGTCGATAAGGTTCGCCGCCTACTAACTTGTTATCTTCGTAAGAAGTATGGTCTCCTTGAAAttaTTAAGGAAGAACCCCCAGACTCAAATGAAGATCAAGCTTTATTGTTTGATGAGAGGGCAAAACTGAATCTTGAAGAAGAAGTTAATCAGGTCATGTATGGTAAAGGCGGGCATTTGGACATTGATTCTAAAACATCTCTGATGGAAGAGAATTCTAGGATTTGTGATATGCTAAACTGTGCTCTGAATGCAAAGCAATTGCCCATACCTGTTAAGCCTACTCCTATCAAGGTGTGGAAGTGCAAAAGTTGTAGTTTTAAGTGCAAATCAGCCAAGGAACTGCGGAACCATGAGAAATCTCATGTATCTAGTTCTCCTAAGAAGTTTGTCTTTGGGTGTAGTATGTGTGACTTTAAAGCTACCACAAAGCTAGAACTAAATGAACATTCTCGAAAGCATGTTTTTCCTAAATCATTTGAATGTGAGGTGTGCAGCAAGTGTTTTACTTCACAAGTGGCATTAGATGAACATGCAAGTACACATAAAATTTATCAGTGTGCCGATTGCGGTGCTGCATATGAACAGATTGAAAGTCTTACTGTTCATGAATGTATATCCCAAGATTTGGCTGACCAGTCATCAGTGATATGTGTAATTAAAGTTGAGCAGAATGAGGGAGTTGATTCTACCAGAAATGTTTCTGATCAATTACCTTCAGAAGAGAACTCACAGTCAACTGACTTTGACTCATTGTGCCGGGATACTCTTCAAGAAGAATCTGAATTCTCTGAAGTATCTGTTAATGTTGACAATGAAGCTTCTAAAGAAATTAATATATTTTCTCAAAAGTCGGGTACACCACCTACTGAAGATGAAATTGTGAAGGAAATAGAACCTGAGGGCAATGCTGATGAAGAAATTGCTTCTGTAATTGGTCTGTTCACTGGTGAAGAACAATTTGGTATGGTGGCAGAGGGTGATGAAGGTGAAACTATTGAAGATAtggatgatgaagatgaagatgaggatTACTTGAATGATAATGGTGAGGGGTTTGACCAGGATGTGGAATCTACTAAGAATGgcaacaaaatttttgttaatgGGGTTGAAGTTTCCTTTGCTGACATTGTTGAGCAAGAAGGTGACAATGAAAGTGCTATGGCCGTTGATTTGGTGTCAGCTGAGCTCGATGATCAGTCAGTTGAGGCGAAAGATCTTGAGGTTCAAGGAGTCAAACCTAAAGCATTTGTGTGTTCTATTTGTAAGTTCCGCACAGAAGATCAAGAAGAAATCCAGAGGCATTTGGAATCACACAGCATTACCTTTGCATTGGAGTGTGAGATATGTCAAATGAAGTTGAAGAACCAACGAACTTATGACAAACATATGCAAAGACATCTAACTCTCAAAAGTCCTGTACCTGTTGCTTGTACAATCTGCAAAGAAATAACTGCTGACAAATTTGCTTTGCGAAAACACATGCTTGACAACCACCCTGAAGTATTTAAATGTCAGTTCTGCGATGAATCTTTTGAATCCATTCGAGCCCGACGCAAACATGAAGCAACTCATGATTCTGAGTCTGAGAAAACATGTGAAGAATGTGGGAAATCATTCCGAAAACTTTCTCAACTTAATTTTCATAAAGAGTATGCTCACAGAGAATTGAAGTgccagcactgtgaaaaacaatTTGATACAATTAAAAAACTGAGAGACCATGAAAGACGCCATATCCAGAACAATGATGGATTTCCTTGTTCCCAATGTGACAGGGTCTTAAAAACAGCTGCTGGTTTGAAATTGCACCGTGCCAAACACACTGGGCAGTACAAATTCTGTTGTGATGTGTGTGGTCGTGGGTTTATGTCTAAAGCTATATTAGATGAACATATGGGTCGACATACTCAGGAAAAGCGTTACACATGTGATGTTTGTGGAAAAATGTTTGTGTTTAACAGTACAATGCGAATTCATAGAAGATGGCATGATAATCCTCTCCCTTACAAATGTAAAACATGCGGACAAAGGTTTCGACATACTTCACTTTTGTCTGTTCATCGGAGAAGAATGCATACTGGAGAAAGGCCATACAAATGCCCCTACTGTGCTCTCACTTTTACAGTTAGTAATTGCTTAAAAAGACATGTTGTGCTACATACTGGTGCTTACCCATATTTTTGTGAACCTTGTGACAAAGGTTTTACTACCAGGCAGAAAATGGCAGTGCATCTTGCTAAAGTTCACAATAACAGGGAAATGTTGAACACTAAACCTCCTGCATGTGAATACAAAATGGTTATTCCAAATACTCCTATTCAAGCCCCTCCAGATCTTGGTGATGTTAAAGACCTTGTACCAATGGAGGGAGTTGAGGACGTAGGAGAAGTTCAACATGTCATAATTCAAAGCGATGAGCAGCAGTTAGAAGCAGAGGGTAATATTCAACTGCAAATTATTACAATGGACCCTGATCATGGATTTTCATCAGTGTTTGAATAA
Protein Sequence
MSDTIGSHCFVCDKDLSHSRDNNALLLSNHTEYSRTGLPSKIGQLMGDGFMVVVTACDEACTRCYDLINLLDKLEVDVDKVRRLLTCYLRKKYGLLEIIKEEPPDSNEDQALLFDERAKLNLEEEVNQVMYGKGGHLDIDSKTSLMEENSRICDMLNCALNAKQLPIPVKPTPIKVWKCKSCSFKCKSAKELRNHEKSHVSSSPKKFVFGCSMCDFKATTKLELNEHSRKHVFPKSFECEVCSKCFTSQVALDEHASTHKIYQCADCGAAYEQIESLTVHECISQDLADQSSVICVIKVEQNEGVDSTRNVSDQLPSEENSQSTDFDSLCRDTLQEESEFSEVSVNVDNEASKEINIFSQKSGTPPTEDEIVKEIEPEGNADEEIASVIGLFTGEEQFGMVAEGDEGETIEDMDDEDEDEDYLNDNGEGFDQDVESTKNGNKIFVNGVEVSFADIVEQEGDNESAMAVDLVSAELDDQSVEAKDLEVQGVKPKAFVCSICKFRTEDQEEIQRHLESHSITFALECEICQMKLKNQRTYDKHMQRHLTLKSPVPVACTICKEITADKFALRKHMLDNHPEVFKCQFCDESFESIRARRKHEATHDSESEKTCEECGKSFRKLSQLNFHKEYAHRELKCQHCEKQFDTIKKLRDHERRHIQNNDGFPCSQCDRVLKTAAGLKLHRAKHTGQYKFCCDVCGRGFMSKAILDEHMGRHTQEKRYTCDVCGKMFVFNSTMRIHRRWHDNPLPYKCKTCGQRFRHTSLLSVHRRRMHTGERPYKCPYCALTFTVSNCLKRHVVLHTGAYPYFCEPCDKGFTTRQKMAVHLAKVHNNREMLNTKPPACEYKMVIPNTPIQAPPDLGDVKDLVPMEGVEDVGEVQHVIIQSDEQQLEAEGNIQLQIITMDPDHGFSSVFE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733410;
90% Identity
iTF_00733410;
80% Identity
-