Ffus021682.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella fusca
Gene Symbol
-
Assembly
GCA_029379305.1
Location
JAHWGI010001279.1:654111-657086[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 9.6e-05 0.0083 17.3 0.5 1 23 449 471 449 471 0.91
2 8 8.4e-07 7.2e-05 23.8 4.2 1 23 477 499 477 499 0.99
3 8 2.9e-05 0.0025 18.9 3.3 1 23 505 527 505 527 0.99
4 8 8.5e-06 0.00073 20.6 0.7 1 23 537 559 537 559 0.99
5 8 1.2e-06 0.0001 23.3 0.8 1 23 565 587 565 587 0.98
6 8 4.6e-07 4e-05 24.6 4.5 1 23 593 615 593 615 0.99
7 8 9.5e-05 0.0081 17.3 3.1 1 23 621 643 621 643 0.98
8 8 6.9e-05 0.0059 17.8 0.5 1 23 649 671 649 671 0.99

Sequence Information

Coding Sequence
ATGGATCAACGGAGAGATGATGTGACTCTATTAGGGGATTCAGTGCAATATGGTTTGAAGCACATGTTGCCTGAATGCTTTGtaagtgtcaaacttgaaacgTACGAGGAAGCATCAAGTAGTGATATACATCATTTTCCAACGACTCAAACTGCTGTCACTTCTGAGAACTCTCCTCAAACTAGTTTAGTGAAACCTCCTTTTCTTTGTAAAGATCAGTCTACCGTCCACTCCAACTCCAGCTCTACGAAGCAACATTGTACTGCATCATCCTCCCCTCAACAAGTGATTTATCAAATCCAATTGGCGCCTCCCATGATGCAACAGACGCAGTCCAGCAGTCAATCACAGCCATCTCAAGCAACATCACAGTCTACTCAGATTTCTCATTCTACAGATGCAGAGGTGTCACATGTATCTCAGACTGCAGGGAGACCAGCACCATCACACTCTTTCCCACACACTCATTCACGTTCAACAGATATAGCTTGGCTATCCCATTCATATGTTGATCAAGGCAGTCAACATTTTCATCCTCATCAGCTGCCATACCTACCTAATGATGCATCACTATTGACCACTATACCTCAGCCTGAGGAGGGCACTCGTATTGTGAAACAAAATCAAGATAATCAAAGTGGACCAACTGCAGTCAACTGTCGATCAGATCCTCCAACTGTTTCAGCTGTCTCGACCAGTGAAACAGGAGATAATAATGCATTTATCAGTTATGTACTGAACCCTCAGCGAGGTGTGTCAACAGCAGGGATATTTCTCTTTGACCCCTCAAGGGGACTTCATCCTCCTAGTCCTCATCAAATCCAAGCTGGGAATAGTGAGGACAGTGGAAGAAATAGCAGGCCTGTGGATGAAGTTATTAGAGACAATTCCTCTGACTCAAGAAGCATATCTGAGTCTCCTAAACCTGGAGAAAATCATCTTGTATCCCGTGGATGTCAAACAGTGTTGACAATGTCACAGATTCAGGATGGTCCGCTGTTACCTGATGCCAAAATAATAATAGCTGACACCTCAACCTCTGAAGTAGCAGAGCCAGAGGAAACCAAGCACAGAGTCTTCACTGATGCCGATGGTGAGGATAGTGAGGAGGCATCAAGCATGGATTCGGGTCGTTTGGGCTCTAATGGCTCAGATTTTGGGGAACAATCAGCCTTTGCACATCAACATCCTGTGGGTGGCCGACATGGTGGGGTTTCAACAGCGCCTGGGGCTCGGGGGGGTTCATCTCAGCATGACAGTGATGCATCTACAAGCCGCAGGAATAATTCCAATGAAATTTTAAGCGGTGCTCCTGACTTTCCTTTCATGGAAACTGATAGACCATATCGCTGTGATATATGCGGGAGAACATACTCTTCTCAGCAAGCTCTTGTTAATCATGACCGATATCATCGTGGTGAAAGGCCTTATGAATGTGAAACATGCCACAAGGCTTTTGCCACCAATTCTCATCTGATAACACACCGCCGCACTCATACAGGAGAGCGTCCATTTCAGTGTCAATTATGTCAGCGATGTTTTGCTGACAGATCTGCTTTTGTAAAGCATGAACGTACACATGGTCCTAATGGATCCATTATTAAGCGCTACAAATGTGATGAATGTGGCAGTGGTTTTGTCGATTCATGTGGTTTGAAAAAGCATATCCGCATACATACTGGTGAAAGACCTTACGTTTGCAATGTTTGTGAGAAAACATTCTCTACCAGCTCAACTTTTGTAGCACATAAAAGAATCCACACTGGAGAGAGACCTTACAAGTGTGAGACGTGTGACAAAATGTTTATTACAAAATCTCATTTACTAACCCATCGAAGAACCCACACTGGTGAGAAACCATTCACCTGCACTGTTTGCAATCGCTGCTTTGCTGATGGTTCAAGTTTCCGAAGGCATGAACGTTTGCATACAGGAGAGAACCGTTATACTTGTATGCAGTGTGGTAGAGGTTTTCCTTTAGAATCGTCATTAGAAAAGCATAAGCAAACTCATGTTCCTACAAGTACATTTTCATCATATATGTATGAAAACCGCAATGATTTGAACTGTTTGAGCACTCAAAGCTGTGATGTGCAGAACAGTCGATCAACTAGAATTACAACATCTCAGCAAAGGGAAAATTCTGATCGTAATTGTGTTGACCTTTCTCGTGAGATTTCTGGAGATGTCCAGGTCTCAAGAAATAATCTTTGTGCTGTTGCCTCCCGTGAAATTGAGTGTGACAATCAAAGTGGTCATGCTGCAATCATGGTCACAGCCAGGGAAATAGCATAG
Protein Sequence
MDQRRDDVTLLGDSVQYGLKHMLPECFVSVKLETYEEASSSDIHHFPTTQTAVTSENSPQTSLVKPPFLCKDQSTVHSNSSSTKQHCTASSSPQQVIYQIQLAPPMMQQTQSSSQSQPSQATSQSTQISHSTDAEVSHVSQTAGRPAPSHSFPHTHSRSTDIAWLSHSYVDQGSQHFHPHQLPYLPNDASLLTTIPQPEEGTRIVKQNQDNQSGPTAVNCRSDPPTVSAVSTSETGDNNAFISYVLNPQRGVSTAGIFLFDPSRGLHPPSPHQIQAGNSEDSGRNSRPVDEVIRDNSSDSRSISESPKPGENHLVSRGCQTVLTMSQIQDGPLLPDAKIIIADTSTSEVAEPEETKHRVFTDADGEDSEEASSMDSGRLGSNGSDFGEQSAFAHQHPVGGRHGGVSTAPGARGGSSQHDSDASTSRRNNSNEILSGAPDFPFMETDRPYRCDICGRTYSSQQALVNHDRYHRGERPYECETCHKAFATNSHLITHRRTHTGERPFQCQLCQRCFADRSAFVKHERTHGPNGSIIKRYKCDECGSGFVDSCGLKKHIRIHTGERPYVCNVCEKTFSTSSTFVAHKRIHTGERPYKCETCDKMFITKSHLLTHRRTHTGEKPFTCTVCNRCFADGSSFRRHERLHTGENRYTCMQCGRGFPLESSLEKHKQTHVPTSTFSSYMYENRNDLNCLSTQSCDVQNSRSTRITTSQQRENSDRNCVDLSREISGDVQVSRNNLCAVASREIECDNQSGHAAIMVTAREIA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733423;
90% Identity
-
80% Identity
-