Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010001064.1:62125-64521[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0027 0.23 12.8 0.8 1 23 166 189 166 189 0.94

2 10 0.00067 0.058 14.6 1.0 2 23 200 221 199 221 0.95

3 10 0.0069 0.59 11.5 3.1 1 23 279 301 279 301 0.97

4 10 0.0001 0.0087 17.2 4.0 1 23 307 330 307 330 0.96

5 10 3.5e-06 0.0003 21.8 2.8 1 23 336 358 336 358 0.99

6 10 3.4e-07 2.9e-05 25.0 2.4 2 23 365 386 364 386 0.97

7 10 0.00026 0.023 15.9 2.0 1 23 392 414 392 414 0.95

8 10 1.6e-06 0.00014 22.9 0.2 1 23 420 442 420 442 0.98

9 10 5.3e-05 0.0046 18.1 0.9 1 23 448 470 448 470 0.98

10 10 0.00025 0.022 16.0 0.1 1 23 476 499 476 499 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0027	0.23	12.8	0.8	1	23	166	189	166	189	0.94
2	10	0.00067	0.058	14.6	1.0	2	23	200	221	199	221	0.95
3	10	0.0069	0.59	11.5	3.1	1	23	279	301	279	301	0.97
4	10	0.0001	0.0087	17.2	4.0	1	23	307	330	307	330	0.96
5	10	3.5e-06	0.0003	21.8	2.8	1	23	336	358	336	358	0.99
6	10	3.4e-07	2.9e-05	25.0	2.4	2	23	365	386	364	386	0.97
7	10	0.00026	0.023	15.9	2.0	1	23	392	414	392	414	0.95
8	10	1.6e-06	0.00014	22.9	0.2	1	23	420	442	420	442	0.98
9	10	5.3e-05	0.0046	18.1	0.9	1	23	448	470	448	470	0.98
10	10	0.00025	0.022	16.0	0.1	1	23	476	499	476	499	0.94

Sequence Information

Coding Sequence: ATGGTCTTAGACATTGATAAAGTCTGTCGTTTGTGCTTAGAACTTTCGTCAAATTCCATATTTCAATCCAACAATTCTAATGGACACCCAGCCTCCCTCAGCGACGATTTAATATCAAGAATCTTCGAATGCACCTCACTCAAGGTTGCACTGGGTGATGGATTACCTGAATCTATTTGTGGATCCTGTTTACGACTTATTGACAAGTTCCTTCTCTTCCGTAAGATGTGTTGGGAAGCTGATAATAAGCTCAGAGAGCATCTACTCAATAAGGAAGAGAGTAATTTTTCATCGTTATCTGCACCTGTTCGCCTTGATGATGACCAGGTAAATTTGTCTTTTGAGGTAAGAAACAATTGGCGTGAAGCTTCAGACATCAAAGGAGAACAAATCTCATCAGATGATGACAGAAATGAAATTGAGATTGATGATGAATCTGATGAAGATTATCTTCGCAGTCCCTCAAAATCTGCTTCCAAGTTATCTCAACCAAATTATAACTGTGATTCTTGTGCTGAATCATTTAATAAGTTATCAGCACTCAAGAAACACAAAAAAGATGAGCATTCCAAAGCCAAGAGGTCTAGACCAGTTCTGAACTGTCAGTACTGCGACAAGCCATTCAAGCAGCGGAAAAGATATGAAGAACATGTCAAAGCTCATGAAAGCAGGGAAGATGTTGAAGTAATGGATAATGATGAGGAGAGCAATAAACCAAATAATGATTCTGATTCTGATTCTCAAGCTCAGATTGGAAAGAACACAAATGATGCTGAAGATCAGCTGTCTAAAACAAAATCcactgatgaaaaaaaaaaaaaggttcgcAAGGTGTATGATTGTGAATATTGTGATCTACAGTTCAATAGTCATACCAAATTCACTCAGCATGAACTTATGCACACAGGTGAGAAAAAGTACAATTGCTCAGACTGTTCTCGTAGTTTTACTCACAAGCATAGTTTAATAGGTCACATCAAGGAGCAGCACACAGGAGAAGTTAATTTTAGATGTGATGTTTGTGGTAAAGGCTTTGTACACCAGTCAACTTTCAACGTCCATAAAAAAACGCATTCCACAGAGAAGCCACTCAAATGTCCAGATTGTGGAAAATGTTTTACCCAAATGAAAAATCTCAGAGTTCACCGTCAGATCCATTCAGCTTCTCGCACACATACGTGCCAAGTATGTGGCAAGAGCTTTAATTTCATGAAAACATTGAAAGTGCATTTAGTCTTACACTCAGGAGAAAAACCATATGTTTGTTCCTACTGTGGGAAAGGTTTTGCGCAGTCAGCACCCCTTAAAACCCATACTAGAATTCATACTGGTGAAAAGCCGTATGAATGTACTTTGTGTTCATCTAGTTTCTCTACAAATAATGCATTAAAGTCTCACATCCTTAAGCACTCAGGAGAGGCACCATACTCATGTGAAGTGTGTAATAAGGGATTTGGTCGTAAAAAAGATATGGTTGCTCATCAAGAAGAAGCCCACAGGGTTTTTATTGATTTACCGAATGAGACAACTAATACTGTGTCAGTGCCAGCCCAAAGCAGCTTGCCTGTTACCAATTTAATTCAGGTAAAGAAGATACTGACTGTCCCACCTTCTGTAAGTCCTGAAGTAATTATACCTGATATTGTACGACCTGATATCATACGACCTGAGTTGACTGTTGTGCGTCAGATGGTAACTCAAGTACACACTCAAAGTACTTCTCATGAATTGCCTCCACCTTTGGCCCCTTTATCTGTAACTCGTGTCCCGCAACGAAGTGCACCAGTGCGACATGTCACTCATCGCATGTCCACCCAACTTCAACGCATGACTCATCGTACAGCTTCCCCTCTCCACCCTCCTGCTCCAAAGGGCATTCCCAATCAGCCCTCACTCTGA
Protein Sequence: MVLDIDKVCRLCLELSSNSIFQSNNSNGHPASLSDDLISRIFECTSLKVALGDGLPESICGSCLRLIDKFLLFRKMCWEADNKLREHLLNKEESNFSSLSAPVRLDDDQVNLSFEVRNNWREASDIKGEQISSDDDRNEIEIDDESDEDYLRSPSKSASKLSQPNYNCDSCAESFNKLSALKKHKKDEHSKAKRSRPVLNCQYCDKPFKQRKRYEEHVKAHESREDVEVMDNDEESNKPNNDSDSDSQAQIGKNTNDAEDQLSKTKSTDEKKKKVRKVYDCEYCDLQFNSHTKFTQHELMHTGEKKYNCSDCSRSFTHKHSLIGHIKEQHTGEVNFRCDVCGKGFVHQSTFNVHKKTHSTEKPLKCPDCGKCFTQMKNLRVHRQIHSASRTHTCQVCGKSFNFMKTLKVHLVLHSGEKPYVCSYCGKGFAQSAPLKTHTRIHTGEKPYECTLCSSSFSTNNALKSHILKHSGEAPYSCEVCNKGFGRKKDMVAHQEEAHRVFIDLPNETTNTVSVPAQSSLPVTNLIQVKKILTVPPSVSPEVIIPDIVRPDIIRPELTVVRQMVTQVHTQSTSHELPPPLAPLSVTRVPQRSAPVRHVTHRMSTQLQRMTHRTASPLHPPAPKGIPNQPSL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -