Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010000979.1:3978800-3987377[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00051 0.044 15.0 3.1 1 23 725 748 725 748 0.97

2 18 0.2 17 6.9 0.1 3 23 756 776 755 776 0.97

3 18 0.00084 0.072 14.4 0.8 1 23 783 806 783 806 0.91

4 18 0.018 1.5 10.2 0.0 3 23 813 833 811 833 0.95

5 18 0.0018 0.16 13.3 0.4 2 23 838 860 837 860 0.94

6 18 4.6 4e+02 2.6 0.6 6 21 871 886 871 887 0.94

7 18 0.00017 0.014 16.5 5.1 1 23 1507 1530 1507 1530 0.98

8 18 3.8e-05 0.0033 18.6 0.9 1 23 1536 1558 1536 1558 0.97

9 18 5.2e-05 0.0045 18.1 1.0 2 23 1564 1585 1563 1585 0.97

10 18 0.0071 0.61 11.4 1.0 2 20 1592 1610 1591 1612 0.93

11 18 0.00037 0.032 15.5 0.3 1 23 1620 1642 1620 1642 0.97

12 18 0.0055 0.47 11.8 4.4 1 23 1648 1670 1648 1670 0.99

13 18 3.9e-06 0.00034 21.7 1.1 1 23 1968 1990 1968 1990 0.98

14 18 8e-05 0.0069 17.6 0.6 1 23 1997 2019 1997 2019 0.96

15 18 0.062 5.4 8.5 4.3 1 23 2024 2046 2024 2047 0.89

16 18 0.43 37 5.8 1.9 3 23 2054 2073 2047 2073 0.91

17 18 0.046 4 8.9 0.1 2 22 2098 2118 2097 2119 0.83

18 18 0.64 55 5.3 0.9 1 23 2126 2149 2126 2149 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00051	0.044	15.0	3.1	1	23	725	748	725	748	0.97
2	18	0.2	17	6.9	0.1	3	23	756	776	755	776	0.97
3	18	0.00084	0.072	14.4	0.8	1	23	783	806	783	806	0.91
4	18	0.018	1.5	10.2	0.0	3	23	813	833	811	833	0.95
5	18	0.0018	0.16	13.3	0.4	2	23	838	860	837	860	0.94
6	18	4.6	4e+02	2.6	0.6	6	21	871	886	871	887	0.94
7	18	0.00017	0.014	16.5	5.1	1	23	1507	1530	1507	1530	0.98
8	18	3.8e-05	0.0033	18.6	0.9	1	23	1536	1558	1536	1558	0.97
9	18	5.2e-05	0.0045	18.1	1.0	2	23	1564	1585	1563	1585	0.97
10	18	0.0071	0.61	11.4	1.0	2	20	1592	1610	1591	1612	0.93
11	18	0.00037	0.032	15.5	0.3	1	23	1620	1642	1620	1642	0.97
12	18	0.0055	0.47	11.8	4.4	1	23	1648	1670	1648	1670	0.99
13	18	3.9e-06	0.00034	21.7	1.1	1	23	1968	1990	1968	1990	0.98
14	18	8e-05	0.0069	17.6	0.6	1	23	1997	2019	1997	2019	0.96
15	18	0.062	5.4	8.5	4.3	1	23	2024	2046	2024	2047	0.89
16	18	0.43	37	5.8	1.9	3	23	2054	2073	2047	2073	0.91
17	18	0.046	4	8.9	0.1	2	22	2098	2118	2097	2119	0.83
18	18	0.64	55	5.3	0.9	1	23	2126	2149	2126	2149	0.90

Sequence Information

Coding Sequence: ATGCAAGACGTCGAAGCTGGTTTGCTAAACCTTTGCCGCCTCTGTGGTGAAGATGATGTTGAGTGCTCCGATTTATTTGATGAGAAAGGACAGAAAGACGACCTACTCTCTAAAATCCAACTATCTGTCAGGATATCGATAACTCAAGATGATGGACTTCCAACAGGAATTTGCAATGAATGTCGTGAGAAGCTGTCTGAGTACACCATATTTTATCAGCAATGCCATGATACTCAAGAGAGACTACGAGAGTTCATATCCATTGAGTCTGCAATGCAGAAATCAACCACTAATAACCAGACTGAGATAAAAACTACGGTTGACAGTGAACCTGACGATGAAACTGATGATTTTTACTTTGAGGAAGCTGAGGTTGAGGCTGAGGATACGGAAGGAGATACTGCTACAGAGTTTTTGGAGACCGAAGAGAACATTCCAGCAGATGCTGAAAATGAGAGTTCATTTGCTGCCTCTGAAAGAGGAATAACACTTCCAATGAGAAATTCTACACCTGGGCAGAAAAAGGATGTAAAGGAAGTCAAATTGACTAAATTTAAATCAGTGCAAGTGGCAAATAGAAAACCTTTTGGTCGAGGGAGTAGTCCACAAGAAGATCTCGTAGCAGAACCCTCAACCAAAGTGGTTGAAAACTCTGAAATGCATGCTACTGCACCAATATGTAAGGTTCAATCAGTAGTATCAATTAGTAGTGGCTCAAGCTCTTCTTGTACTCAAATCTCCAGCAGTTTGGCGCCCACCTCCGAACCACCCCCTCTGATCAAAATAGTTAAATCAGTTGTTAAACCTTTCCCCTTCATGGTTCCTCCTCTAGTACCAATTAAGAATATTGCTCCTGTCAAACCGTCAACTTCAGTTCCATCAATTTCTATTGTTAAACCTAATATGACAAAGTTTGTACCACAAGTTGTCAAAGTCACACCACCAACAGCACTTCAGCCAGTTGTGAAATTGACACGCTTGCCAGAATCCACCTTGATGAAATTTGTTAAAGGCTATTCTCCTAAACATACCAAGGCTCCGGAAAAAGTCATTGCCCCGAAAGGCCCATCTCTCACAACAAGGAATGGAGTACCTGTTATCAAATATGCTACACCCCTCTTAAAAAATCAATCTTTCAACGGTTTAGCTACGAGCAGATTGTCAATGGAACCACCACCTCTTGTTAGACGCTTAGAAACAAAAGTAGGTGCTGAATCATTTGGCATGGCAAGGCATAGGGTGGCTCTGGAACTTCCCTCTGTTACAACAAGTACGGGGGCAAAGGGACGGGTTTTTGTGCTGGCTGGAAATAACTCTGTGGTGAAAATTCCAGCAGCCTTCTTCCCCCAGGAGAAACCTCAAAAACCTGTCAAGAAAGTCTACCAaactggacaaaaaaaaattgatcctcTTCCCACAGTTAAGAGTACTACATCCACATCCAAGAGAAAAAAGTCCGATCCACTTCCGAAGGTTGATAGTttgacaataaaaaaaaagaagtcagAGCTAATCGCTGATGCTAGCAAGCCCACAGATCTAGAATTACCAGCTGACCAAACTGAAAAGCCTCTTGATGAAAATATTgaagttaaaaaaagaaagaaaaagaagcctctccttcctccttcaGCAATTCCATATCTTGTTTTGAAAACTGGACAGCTTGTGAAATTAAGTGAAGCAGAAACTGTTCCTTTATCTGAAATACCAATTCCGCCAGTTATTGTAATGCATGTGTCTAGAAATGTTTCTTCCCCTCCAAATGTGACTGTGGAAGGCCAAATCAATTTTCCTGACCTTTCAAGTTATTCAGGTTTCCCTGTAGATCTAGGATCTGGTCTTCATGTTCGTTCCTACCCCGACTCCTGCTCCAAAGATTTTAGTGTGTCTATTAGAGAAACAGAGAATGGTAATGAAACTACTGCTTTGGAGAAAGTTTTGGTTGTGCAGAATAGATGGTTACGGCAGCAtaagaaaaaaggaatttttgTTAGAAAGCCAAGTAAGAGGTGTCGTCCTGCTACTTGCCCAGAAACTGCTGCTCATATAGAAGAATTACCATCTACTGATCACACTAAATATTTATGCAAAGCCTGTGGTGTGTCATTCATTCACAGGAAAGCTTGTGAATACCATGTTATCAACAAGCACATGTCTGAAATCTGTCCCTACCAGTGTAAAGAATGTGGTAAAAAATTTGCTACAAATTTTTTAAGAGCATCTCATATAAGACATAGACATGTCCGGTCTCCAGATCTGCTATGTAGTATTTGTGGTGCTGCCTTCAGATCAATGCAGGTTTTAAAAGGTCATGAAATGCGCCATACTACTAAGGATCCTCCATTTAAATGTAAGACATGTGGCAAAGGCTTTTACACTAAAGCTAATCAAGTGAAACATGAACTAGCATTACATGGAGTGAAGAAAGTAATCTGTGATATCTGTGGTGAAAGTTTTCCCTCTGGAGGGCGCTTAAATGAACACCGCCTTAACCACACAGGAGGATTAAAATGTAAGGAATGTGGTAAAGTTGTTGACACTAGACCTAAACTTCGTGCCCACAAGGCTAAGTTCCACCAGAAGGATGAAACCTTCATGCCTTGTCCTTGTGGAAAGAAATTCAAAGTTTTTGCATTTTTGCACAACCATCGTAAAATATGCCCTACATTCTTGATGCAGAGTGGTCAAGCTGTTTCAGACAATGACATTAATGAGGACCCAGAGTATTTTGGTGATGAAGGAGTAGCAGAGGAGGTATTTGAAGATGAGGTTTTGCCTTTACTGTCTGTTGGATCAAACAGCCATCGTACTGAAGAGGAACGAGCACCTGAGACAACTCTACCGCCACCTCTCACTCCCTTGCAACTCTATGAGCCTCTGGAAAACGAGGACATTAGAGATATTCCCCTTGAAAGTACTTTAAGCTTATCATTATTTGACGACATGGACAAAAACGCCTCAAGCTTTCGGAAAGAAATGGATGTTCTTTTGTGTGGAGAAACAGATAGCCAGCAAACAGTTTCTCGTTTGTCATGCTGTTCAGAGCCAAGGTCTTTAACATCCCCTAGCTTTAGTTTACAAGACTTTTCAATGGATCAAGGAAACCACCTACCCATGAATGAATTTCCCTTATCTGAAGAACAGTTACCACCTGTCAAGACTGTGAATGAAACTGAGAGTGAAGGTAGTAAAATGGAATATACAGCTGCTACAAAATCTGTTGATACCAAAAGCAGTGACCAAAGTATCATGTCAGAAGGCCAGCAAGTATCAAGTTCTGTTGAAGAGGAATCTCATATAACACATCCCTTTGGCCAACAATTACAGAAAAGCATTTCTTATCAAGAATTTGAAGCAAGTCCTTCACTAGACAATAGGGCAATACACCAGACAATAGGAACTCTTCCAAGCTTTTTGGGAAGTATTAATGCTGATGTGGGATCATTTAAAATGCAAAATGAATTGAATACTGTATTAACAGTTGATGCAAAGGTGGTTGGTGCTTCAGGTGAAATCAAGTTTCAGCGTAACATGGGTGGAGTTAAAATTGTCTTTCCTCCAACAACTGCTGAGAAAGCAATTAAATTTGACGATCTGATCAGCCTCTTTTCTCTAAATGAAGTTCGTCAGGCATTCTGTGCTGAaagtaaagaagaagaaatcATCCACCAACTTGTTCAGCAAGGCTTGGGCAGTGAAGGTGTTACCCAGAGTGGTCGATTGTCCTCTCTATCTCAAGCTAGTTCTTTAGATCTACCAAATAGCCTTTTAAGTCCTCTTTCCTCTGTGTGTGATTCTTGGAGCTGGGAAATCTCTCAATTACTTAGCGGTGATGATAACAGTAATGAAGGGGATAATAGGAGTGAGCTCAACACACCCATTGTTACACTCCCTCCAAGACTGACTGATAACTCAAACTTAGAAAAACCTATACACAGTGTACCTCCTCCTTATAATGTTTTGTTAGATGTGCCTACATCATCTCCACTCGACAACTTAAGTGTATCATCCAATTTTAAGATTTCAAATTCCAAAGTTTCGCCTATGCCTGAAAAAAACCCTTCTAATATCCCTTGTAATCTTAGCATTCCTCAGGGTCTTTTTACTCCTCTTCAAGTACAGATACCAGAAGATAGTGACAATCCCTCCAGAATATCTCGAACCCTGCATTCTTCCAACACTTACTTTGATGAGATAAGTCTTGGTATTTCCCCTGTCATTGATTTAGACCCAAATGTAGCCACAGTGCGAATGTCTTGTCCTCCATCTGAAAATTTTCACCAGTCACCCTCTAGGAAATGCACAGAAACTATGTCTTTTCTAGTTCCAAATGTCTCCAACACAGCAACTGAATTAGCAAATATCAATGCAAGTACTGCAGTGGTGTCCAATGATGATGACTGTGATATTAAAGAGGTAGCTGTAGATATTATTATAGATGATGGCAAGATGAACTGGCTGAAACTTCTTCCGGATCCAACAGAtgaatttgtaaaaaaaatttctcataAATGTTACAAATGTCATATCTGTTCAAGAAGCTTTCGATTTAAGTTTCAGGTGCAGAGGCATATAAAAATAACTCATTCAACCTCTAAGCCTTTTATTTGTGCTGTGTGTGGTGCAACTTTCAGTATTAAACATTATCTAACAAGACATATGAAAGTTCATGGAGATAACAAACTTCAATGTTCATCATGTGATAAGAAATTTACTCGTCAATATCAGTTAGCTGAGCATGAGCTGACCCATACAGATCCTTCATGTATGAAGTGTCCAGATTGTGGTAAACAGTGTAATAGTAAGAATGCTTTCAATGTTCATAAATCAATTTGTTCTGGAACTTTGCAACCCTATATTTGTGATATCTGCGGTAAAACTTATCCTGGATTAACTGCTTTGAATCATCACCGTGCAAGACATGATTCTGTGAAGTCATTTAAGTGTACAATGTGTGAATCTTCATTTCATACTCAGTGGCAACTTGTGAAACACACGAAACGTCATGCCACACAAGGTCTCTACGTCAGGAATGAAGATGAGAGATTTCTATCTAGTCCTGTTTCTGTAGATGTTGAAGCTGATGATGTTGATCCTGATCAATTGGAGGGGACATCTCGACTTGACAACACCAAATTTCCTACTGCAAGTCCAAAGAAAAAGTTTGTATATCTGGTTAAGAATGCTGGTCATATGCCAGTTGAATCAGTTCTCTCTGCTGTTCTGGGTAATCAAGAACCAAATTCTTCAAGAGGGCTAAGTTTATTAGCACCTAAAAGCAAGTCTTCCTCAGGGAAGAGACAAAAGAGGAAACGCTCACCTGATGATAAATTAAGTCAGAGGGTTTTGATCAAAGGAAGTGATGGTAAAGAAAACATGATTTTCCTGGATGTCCCAGAACCTCTTAATGTAGTTTCCACTGAACTTCAAGCAAGTTCTGAAGACGTGGATGATCCTACATGGGCTCCTACTAATTCTGGAAATACTTCTGCTAAAAGCACTTCGTGGTCTAAGTTGAAGAGGGCAAGGAGTGCCGTAAGAAACAGTATGAAAATATTGCGCCTTCCTAAACCTCGAAATAAGAGGGAATCTAGGGCAGAGCGGTCCTTGAGAACACCAGTTCGAAAGCAAGCACCAATTTCTAAGGATGACCCAAACTATGCAATCATGATGGAAAAGTTTGCAAAACCTGTATCAATATCAACCTTGAAACGACATGGGCTATATCAACCAAAACCTAATGGCTATAAAATTAATGCACCTTACAAAAAAGATGTTGCACCTTACATTGAAAAAGTGTCAGATACGGAATTTAAATGCAAAATTTGCCTTACAGCAAAATTTAGGTGGAATTATAAGGCTGAAATTCATATTTTGGAGCATTTAGATTGGAGACCTTTCGAATGCGATGTCTGTGGACGAGCATTCACTCAAAATCAGTATTTGACCAAACACAAAAGACTGCATTTTCCTGATGACACTAATTTTATTTGTGAAGTTTGTGGGAAAGGATTTCAGCGGCGTTACTATTTGACATACCATATGGATGAACATTTTGATAGAACTTACACTTGTGAAGAATGTGGTAGGAAATTTTCACGCCGTCAAAAGCATGATGAGCATGTTCGGTACCACCACAAATGTCACTATTCTATTTGCGACATATGTGGGCAAACATTACGCACAACTGCTCTCTCAAGACATAGAAAGCAACACACAGAAAAGAGCCAAGGCAGGAAGAAGAGAGAAACTAACACAAATGCTGGAACTTCTCAATCAGCTTGGCTTCCGTGCAGTATTTGTGGTCGTGCTTTTCGTTCTCCAAAAGAGAGGGATGACCATGAGGCAGAACATAATAACTCATTACTTCCTTTCCAATGCGAACCGTGTATTTTGTTCTTTAAAACAAAACGTACCCTGAACAACCATATAATAAACTCTCATAGTCAGGTTGGTGAACAAGAATGTGAGGTAGCTTCTCAGGAAGAAGAGTGCGATATAGCAATTCAGGAGGAAGATTGTGATGACCCCTCTGAAGTCCTCGACGAACTTTCTTCAACTATAATTGTAAGCATTCCTGGCGAGTTATAA
Protein Sequence: MQDVEAGLLNLCRLCGEDDVECSDLFDEKGQKDDLLSKIQLSVRISITQDDGLPTGICNECREKLSEYTIFYQQCHDTQERLREFISIESAMQKSTTNNQTEIKTTVDSEPDDETDDFYFEEAEVEAEDTEGDTATEFLETEENIPADAENESSFAASERGITLPMRNSTPGQKKDVKEVKLTKFKSVQVANRKPFGRGSSPQEDLVAEPSTKVVENSEMHATAPICKVQSVVSISSGSSSSCTQISSSLAPTSEPPPLIKIVKSVVKPFPFMVPPLVPIKNIAPVKPSTSVPSISIVKPNMTKFVPQVVKVTPPTALQPVVKLTRLPESTLMKFVKGYSPKHTKAPEKVIAPKGPSLTTRNGVPVIKYATPLLKNQSFNGLATSRLSMEPPPLVRRLETKVGAESFGMARHRVALELPSVTTSTGAKGRVFVLAGNNSVVKIPAAFFPQEKPQKPVKKVYQTGQKKIDPLPTVKSTTSTSKRKKSDPLPKVDSLTIKKKKSELIADASKPTDLELPADQTEKPLDENIEVKKRKKKKPLLPPSAIPYLVLKTGQLVKLSEAETVPLSEIPIPPVIVMHVSRNVSSPPNVTVEGQINFPDLSSYSGFPVDLGSGLHVRSYPDSCSKDFSVSIRETENGNETTALEKVLVVQNRWLRQHKKKGIFVRKPSKRCRPATCPETAAHIEELPSTDHTKYLCKACGVSFIHRKACEYHVINKHMSEICPYQCKECGKKFATNFLRASHIRHRHVRSPDLLCSICGAAFRSMQVLKGHEMRHTTKDPPFKCKTCGKGFYTKANQVKHELALHGVKKVICDICGESFPSGGRLNEHRLNHTGGLKCKECGKVVDTRPKLRAHKAKFHQKDETFMPCPCGKKFKVFAFLHNHRKICPTFLMQSGQAVSDNDINEDPEYFGDEGVAEEVFEDEVLPLLSVGSNSHRTEEERAPETTLPPPLTPLQLYEPLENEDIRDIPLESTLSLSLFDDMDKNASSFRKEMDVLLCGETDSQQTVSRLSCCSEPRSLTSPSFSLQDFSMDQGNHLPMNEFPLSEEQLPPVKTVNETESEGSKMEYTAATKSVDTKSSDQSIMSEGQQVSSSVEEESHITHPFGQQLQKSISYQEFEASPSLDNRAIHQTIGTLPSFLGSINADVGSFKMQNELNTVLTVDAKVVGASGEIKFQRNMGGVKIVFPPTTAEKAIKFDDLISLFSLNEVRQAFCAESKEEEIIHQLVQQGLGSEGVTQSGRLSSLSQASSLDLPNSLLSPLSSVCDSWSWEISQLLSGDDNSNEGDNRSELNTPIVTLPPRLTDNSNLEKPIHSVPPPYNVLLDVPTSSPLDNLSVSSNFKISNSKVSPMPEKNPSNIPCNLSIPQGLFTPLQVQIPEDSDNPSRISRTLHSSNTYFDEISLGISPVIDLDPNVATVRMSCPPSENFHQSPSRKCTETMSFLVPNVSNTATELANINASTAVVSNDDDCDIKEVAVDIIIDDGKMNWLKLLPDPTDEFVKKISHKCYKCHICSRSFRFKFQVQRHIKITHSTSKPFICAVCGATFSIKHYLTRHMKVHGDNKLQCSSCDKKFTRQYQLAEHELTHTDPSCMKCPDCGKQCNSKNAFNVHKSICSGTLQPYICDICGKTYPGLTALNHHRARHDSVKSFKCTMCESSFHTQWQLVKHTKRHATQGLYVRNEDERFLSSPVSVDVEADDVDPDQLEGTSRLDNTKFPTASPKKKFVYLVKNAGHMPVESVLSAVLGNQEPNSSRGLSLLAPKSKSSSGKRQKRKRSPDDKLSQRVLIKGSDGKENMIFLDVPEPLNVVSTELQASSEDVDDPTWAPTNSGNTSAKSTSWSKLKRARSAVRNSMKILRLPKPRNKRESRAERSLRTPVRKQAPISKDDPNYAIMMEKFAKPVSISTLKRHGLYQPKPNGYKINAPYKKDVAPYIEKVSDTEFKCKICLTAKFRWNYKAEIHILEHLDWRPFECDVCGRAFTQNQYLTKHKRLHFPDDTNFICEVCGKGFQRRYYLTYHMDEHFDRTYTCEECGRKFSRRQKHDEHVRYHHKCHYSICDICGQTLRTTALSRHRKQHTEKSQGRKKRETNTNAGTSQSAWLPCSICGRAFRSPKERDDHEAEHNNSLLPFQCEPCILFFKTKRTLNNHIINSHSQVGEQECEVASQEEECDIAIQEEDCDDPSEVLDELSSTIIVSIPGEL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -