Ffus009959.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella fusca
Gene Symbol
Zbtb8b
Assembly
GCA_029379305.1
Location
JAHWGI010000565.1:108541-111024[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 1.1e-06 9.8e-05 23.4 2.1 1 23 170 192 170 192 0.99
2 11 0.00042 0.036 15.3 1.8 1 21 198 218 198 221 0.95
3 11 3.7e-05 0.0032 18.6 3.8 1 23 233 255 233 255 0.99
4 11 2.1e-06 0.00018 22.6 2.7 1 23 261 283 261 283 0.99
5 11 5.5e-06 0.00048 21.2 2.1 1 23 289 311 289 311 0.99
6 11 7.3e-06 0.00062 20.8 0.1 1 20 317 336 317 337 0.96
7 11 0.015 1.3 10.4 3.0 1 23 346 366 346 366 0.95
8 11 2.4e-07 2.1e-05 25.5 0.5 1 23 372 394 372 394 0.99
9 11 2.4e-06 0.0002 22.4 0.9 1 23 400 422 400 422 0.98
10 11 0.0038 0.33 12.3 1.3 2 21 429 448 428 451 0.95
11 11 0.2 17 6.9 0.1 1 21 457 477 457 478 0.92

Sequence Information

Coding Sequence
ATGACTCGAGTTAGTGCCCGCTCTAGGTCAAAAGCCACCCAACTCCCTAGTGaagaaagcaaagaaaataCCAAAGAAAGTAAATCACGAAGTAAGAATGCCAAAGAATCTATGTCTAAAACCACCAAAGCAACTGCAGAAGTGGAAAAGGCTCAAGCAGATAAAATTCAAACACAAGCTAAAGCAAGAGGTAGAAATGTGCGTAACATAGTTAAGGAGGAAAATCTGGAACTTGCTGCCGAGCTTGAGGCCCTCCTCAAGAAAGTAAATGTAGATAGAGCTGCTGTTAGTCTCAATCTGAAaggtgatgaagatgatgaagaggaggaggaggaagaagaggaagaggaggaggaagaagaagaagaagaagaggatgaAATGGATGATGCAGCTGATAAAGAGGAGGATGATGTTGATGAAGATGgagatgaggatgatgaggatgaggatgaagaTTATAAGCCCAATTCTGATGATAAAGACAAAAAGGAAACTGATGTTGGGTATCAATGTGCTTTTTGTGAGTATACATTCACTCGTAAGAGCATGTTGAAACGGCATGTTCGTATTCACACAGGTGAGAGACCCTATGCTTGTGATAAGTGTGATGCTAAGTTTACTCAACAGGGTGGACTGAAGACGCACATGTTGTGTAAACACAGGGATGAGATTGATCAGAAAGACAAAGTTACATATCAATGCCACCACTGCGACCGATCTTTTGTAATCAAAGAACGCCTTCGTATTCATCTCAGAGTGCATACAGGTGAGCTTCCCTATGTTTGTCACATTTGCTCCAAGAAATTTCGTAGAAACGGTGGTCTTCTTCAACACCTGCGTAGGCATGTTGGTATGCGTCCATACACATGTGAGATCTGTAAAGCCTCCTACTATAACTCTACCAATCTGAAGACCCATATGAAACGACATCTTGGTGTCCAGGATTATGTTTGTGATCTTTGTGGCAAGGGTTTCACTCGAAGAGATGGTTTGCGAAAGCACTTAGCATGTCTCCATTATGATCAATGTGCATTCCGCTGTTCTATATGCAACAAATCATTTAAAGGCCACATTCTGTCCCATTTGCGTATGCATTTAAAAGAAAAGCcttttaaatgtgaaatttgcGGTATGCGCTTTGTACAGAGTTCTCAGTTGGTTGTTCACACAAGGACTCACACTGGTGCTAAGCCATATCCCTGTCAAATATGTAAAGTTGCCTTCTCTCACTCATCAGCTCTGCGTATGCACATCAGAAGACATACAGGCGAGAAGCCTGTTAAGTGTATGCTCTGTCCTGCAGCTTTTGTACAACTTCCTCACCTGAAAAAACATATGAGATGCATCCATAAATCTGATAAACCTTATGTGTGTGTACCATGTAAttctttctttaaaaagaaaGTTGAGCTTGAAGAGCACATGAAGGCCAAAGGCTGTAAACCTGTTCCTGCTCCTGAGGCAACTCCTGCCGACAAGAGTTCTGAGGCAAAACCTGCAAAGAAGGCTCGTAAGAGATCCTCAAAGCTAGTTGACTTATCTTCTAAAAGGAAAAGGGTTGAAGATGAGGTAATTGATGAAGATGATTCATCCAATCCGCCAAGACCATTAAATGGGAATGGAGAAATCCCAGAGGAAGAGTTGGAAGAAATTCCCAATCTGAAAGGAGCCAAGGTAGTTCAAGCCTTTTGCCAGCAGCTGTCTGGGGAAAAGAAGCCTGATATCCTTACCACTAACTCAAAAAGCAGATGCAAGTCTACAATCATGTCTAAAAAGTGTGAAGCATCATCTTCAAAGAAAACTGAAGAATCTAAAAAGACCTCTCAAAGAGAGACTCGCTCTAAACGTAAATATAGTTCAGAGTATGGGAGTATGAAACCCAAGATTTCAGAAGAAGATCCTGATGAACCAGCTGCTGTAAATTCTCCATCATCATCAAGGCGGTCTAGTTGTGAAAATAAAGCACTATCTTTCCTGCCGATTTCAAATCCTCACAAAACCTCAAGTTCCACTGAAGACTTAACAAAGAACAACAAAGCAAATCCAGATGATAGATGCGGGAGTCCTATTTGTGAGCCGTTGAGACCAGTTGATCAACCAACAACTGTGATGGTGGAAGAAATGATGCGAAAAGTCACAGAGCGTCTTAAATTGGGTACTAAGACGCCTATTGTCTTAAGAAATCAGCCTATGCCAATTGAAAAAATTAGAATGCTTTTAGCAATTCTTCTTACTCGAATTTCTACAACAGAACGACTGGAAGCTCTTGGGTTTGGCAAGATCCTTATAGATAAAGTGTTATGTGCATCAATTGTTAGCTCCGGAAGAGTGCCATGTGATCAAAATGGCTTATCTGAAAGAGAGGTGATTCTGAAGAACGTTCAGATCTTATTGGAGTGGACAGTTCCTAAATTATATATGGAGCGTTTTAAACGGGAGAATCGGTCAACTGAAGATTTATTAGAGGAGCTTACGTCATAA
Protein Sequence
MTRVSARSRSKATQLPSEESKENTKESKSRSKNAKESMSKTTKATAEVEKAQADKIQTQAKARGRNVRNIVKEENLELAAELEALLKKVNVDRAAVSLNLKGDEDDEEEEEEEEEEEEEEEEEEEDEMDDAADKEEDDVDEDGDEDDEDEDEDYKPNSDDKDKKETDVGYQCAFCEYTFTRKSMLKRHVRIHTGERPYACDKCDAKFTQQGGLKTHMLCKHRDEIDQKDKVTYQCHHCDRSFVIKERLRIHLRVHTGELPYVCHICSKKFRRNGGLLQHLRRHVGMRPYTCEICKASYYNSTNLKTHMKRHLGVQDYVCDLCGKGFTRRDGLRKHLACLHYDQCAFRCSICNKSFKGHILSHLRMHLKEKPFKCEICGMRFVQSSQLVVHTRTHTGAKPYPCQICKVAFSHSSALRMHIRRHTGEKPVKCMLCPAAFVQLPHLKKHMRCIHKSDKPYVCVPCNSFFKKKVELEEHMKAKGCKPVPAPEATPADKSSEAKPAKKARKRSSKLVDLSSKRKRVEDEVIDEDDSSNPPRPLNGNGEIPEEELEEIPNLKGAKVVQAFCQQLSGEKKPDILTTNSKSRCKSTIMSKKCEASSSKKTEESKKTSQRETRSKRKYSSEYGSMKPKISEEDPDEPAAVNSPSSSRRSSCENKALSFLPISNPHKTSSSTEDLTKNNKANPDDRCGSPICEPLRPVDQPTTVMVEEMMRKVTERLKLGTKTPIVLRNQPMPIEKIRMLLAILLTRISTTERLEALGFGKILIDKVLCASIVSSGRVPCDQNGLSEREVILKNVQILLEWTVPKLYMERFKRENRSTEDLLEELTS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733378;
90% Identity
-
80% Identity
-