Basic Information

Insect: Frankliniella fusca
Gene Symbol: PRDM13
Assembly: GCA_029379305.1
Location: JAHWGI010001411.1:520966-526488[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00045 0.039 15.2 0.4 2 23 201 222 200 222 0.92

2 19 2.7 2.3e+02 3.3 2.4 1 23 228 251 228 251 0.89

3 19 0.62 53 5.3 0.4 2 23 255 277 254 277 0.91

4 19 0.00025 0.021 16.0 0.3 1 21 297 317 297 318 0.93

5 19 0.0043 0.37 12.1 0.3 1 23 326 348 326 348 0.97

6 19 0.011 0.93 10.9 0.7 1 23 354 376 354 376 0.96

7 19 3.9e-06 0.00033 21.7 1.7 1 23 382 404 382 404 0.98

8 19 0.15 13 7.3 0.4 1 23 410 434 410 434 0.90

9 19 0.00093 0.08 14.2 4.2 1 23 722 744 722 744 0.98

10 19 0.022 1.9 9.9 0.3 2 23 876 897 875 897 0.95

11 19 0.0038 0.32 12.3 3.2 3 23 913 934 911 934 0.91

12 19 0.15 13 7.2 0.3 2 23 945 966 944 966 0.95

13 19 0.043 3.7 9.0 0.9 2 23 975 997 974 997 0.95

14 19 7.6e-05 0.0065 17.6 1.4 1 23 1002 1025 1002 1025 0.97

15 19 0.0029 0.25 12.6 0.7 1 20 1034 1053 1034 1055 0.93

16 19 5.9e-05 0.005 18.0 0.0 1 23 1063 1085 1063 1085 0.97

17 19 0.011 0.97 10.8 0.6 1 23 1091 1113 1091 1113 0.92

18 19 0.00033 0.029 15.6 0.1 1 23 1119 1141 1119 1141 0.96

19 19 0.00046 0.04 15.2 2.2 1 21 1147 1167 1147 1168 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00045	0.039	15.2	0.4	2	23	201	222	200	222	0.92
2	19	2.7	2.3e+02	3.3	2.4	1	23	228	251	228	251	0.89
3	19	0.62	53	5.3	0.4	2	23	255	277	254	277	0.91
4	19	0.00025	0.021	16.0	0.3	1	21	297	317	297	318	0.93
5	19	0.0043	0.37	12.1	0.3	1	23	326	348	326	348	0.97
6	19	0.011	0.93	10.9	0.7	1	23	354	376	354	376	0.96
7	19	3.9e-06	0.00033	21.7	1.7	1	23	382	404	382	404	0.98
8	19	0.15	13	7.3	0.4	1	23	410	434	410	434	0.90
9	19	0.00093	0.08	14.2	4.2	1	23	722	744	722	744	0.98
10	19	0.022	1.9	9.9	0.3	2	23	876	897	875	897	0.95
11	19	0.0038	0.32	12.3	3.2	3	23	913	934	911	934	0.91
12	19	0.15	13	7.2	0.3	2	23	945	966	944	966	0.95
13	19	0.043	3.7	9.0	0.9	2	23	975	997	974	997	0.95
14	19	7.6e-05	0.0065	17.6	1.4	1	23	1002	1025	1002	1025	0.97
15	19	0.0029	0.25	12.6	0.7	1	20	1034	1053	1034	1055	0.93
16	19	5.9e-05	0.005	18.0	0.0	1	23	1063	1085	1063	1085	0.97
17	19	0.011	0.97	10.8	0.6	1	23	1091	1113	1091	1113	0.92
18	19	0.00033	0.029	15.6	0.1	1	23	1119	1141	1119	1141	0.96
19	19	0.00046	0.04	15.2	2.2	1	21	1147	1167	1147	1168	0.95

Sequence Information

Coding Sequence: ATGAAACTGCCTCCGGCCGCCGACATGAGCACCGCTCCGATCTCTATCATGGAAATAGCTCATCACAAAGGCGATTCTTCGGATAATTTCCGGAAAGGCGAGCAGGATTACGATTATGGCTTGGGCTCCAAGTGGGCTGGTCTAGTGTCTGAAGCCCGCGAGCTGGCCGCCCGCTTCAACAAGGACATGAGCGGCGGCCAGGACGTGCTCAATATGAACTTGTCTGAGAATGGTCATTTGGGTGGTGAAGATCAAGATTTGGGGGAcgaagaagatgaagaggacggagatgatgatgaagaagacGAGGAGGGTAACGAAAATGACGATTGCCCTCCAAGTATACCGAAGAGTGTTTCTGCCAACATACCAGTTACTGTTCCAGTCACAGAATACGGCAATGGCTTTCCATTTGCTAATGATGTTGATCATAGTAGCAGTGATGAAGATGAAGGAGATGATGAAGAAAAGAATGATCTATCGGTCAATGCAAATCCCTTTGGAATTGACATGGACCCATGGTCAACAGATGAAAGCAGCGACAGTGATGATGATGCACAGAATAGTATTCCCCTTAAGTACCCAAATGGTGACTCACTTGAATGTAAATTCTGTGGGAAGATGTTCACCAAGTTATTTGGACTACAACGTCACGAAGCAGCTCACGAAGGCAAAAGCCTTTTTCAGTGCCGATCGTGTGATCAGATTTTCCCCTCGAGAAACAGTTGTGAAAAGCATAAGTTGGATGTGCATTGCACCTGGAAATGCCATTTGTGCTCTCAATCTTTCCTTAAGGCTAAGCGTCTTGAAGTTCACATCGGAGTTGCGCACAATGGCAAATTCTGGGATGGTAAACAACTCTCAGATGAACGTCCAGCTTCTGAAATGTTTGTTTGCAATCAGTGTGGTAAAAGCTTCACCACCAAAGCTGTAATGAAGtaCCACATTGAGTCAAACTGTGGCTCTGAACCAAAGTTTATATGTCCAACATGCGGAAAGGATTGTCTGAGTCAAGATTTGTTGGCTTCTCACATGTCCATACACACAGGTGAAAAGGCATACCTTTGTCGCTTTTGTGGTGCAAGTTACCGACTGAAGGGCCAAATGAAAGTTCACGAGCGCACTCATACGGGTGAAAAACCCTTTGAGTGTAATGTTTGTGGGAAGACCTTTGCTCACACCATTAGTTTGACCACTCACATGACAACTCATACTGCAGTTAAGCCCTTTCCCTGTGATTTATGCGATGTTAGCTTTTCTTGTGTTGGAAACCTTGTCAAGCACAACAAAACCCCCATCCACATTGCGAAAGTGTTTTCCAAGGGAACCCTGGACCAGGGAGACTCAGTATATCAACAGCAGCCTCACCAATCTCAAAATGACAGACAACTTCAGTTCCCTGTCAATGAACCACTTTCTCAGCGTAATGATGACAATTCTCAAGATCATCTAAACTTCTTAGGCTACCTTAATGGACCTGCATTTCCGGGGGTCCACCCAAATGGCAGTTCTAGCCACATGTGGAACCATCAACCTGTCGACGGGGaggatcagcagcagcagcagcaacaacaacaacagcaacagcagcagcagcaacaacagcaacaacaaggTCAACAGCAGCAGTCCTCATCAACCTCATCTTACTCAGGATCGGGATGCAGCTCAGGATCAGGCGGTGGGTCTGGTCAGCAGCAACCTCCTgagcctcctccgcctcctcatGACCAGCAAAATCACGATTCAGGTCTTGTGGCTGTGAAAACAGAACCAGAAGATGAAGACTCAGAAGAGAGTTCTCTTGCTAATCACACTGATCCGAATACAAGTGTTTCTTCTAATCCAAATGCATCCAAATCAACAATTGATGACAGAAGTTCTCCGTCTCCTCTTGATGCAAGCAACTTCAATGCTGCTAACAATGACAAGCCTTTTAGGGACAGGTTTgacagtgatgatgatgataatttCTGGTGGGCTATGGATGAATCAGATAATGACAAAGGTGGGGAGCCTCTTCCAGTGAAGGTGGAACTTGATGAAGGTAGTGGAAATGAGGCAATAAAACCAGAGGTACCAGTCAAAAGAAAACGAGGTAGACCAAAAGGTTCTAAAACTGTGAATAGGAGGGTTGATAAAGAAAAGAATGCCAAGGGCAAATTCACCTGCACAACTTGTGGTAAAGATCTCAAATTTAAATCACACCTTGTAAGACATTCCAAAATGCATCAAGAtgagaagaaaaggaaaagaagaaagaagaagaaaaacaagcaaAGGAGTCCATATACTGTTTCCAGCTCAGAAGATGACAATACTGACTGTGATAAAGATTCATTCTTTGATTGTGTCAGTGAAGATGAAGCAATGCGCTTGGAACAAGTAAAGGAAGAGCCAATTGATGATGAGGAAGGTCATGATGCGGAGGGTATGAACGAGTCCCGAGAAGACAACAATGCTGAGGATCCAAGTGAAACTCCTCAAATAGAGGGAGAGGTCAAAGTGAAGAAGAAGAGAGGACGCAAGAAGAAGAGTGAGATGGAAGGCTGGGAGGGGGGCGAACTTGGGCCTGATGGAGAGCTAAGGAAGAAACGAGAAAGAAAGAAGCCCAAAGAACCTTGTATATGTGGGGTCTGTGGAAAAGATCTAAGATTTAAATCACGCTTGGCAGCTCACATTGCGAATCATACTGCAGAGGATATGAAAGAGAAATTGACTGAGAAAGACTCATGTTGTCTTCTCTGCAATAGGGAATTTGGATCCCCTGAAAATTTGAAGCGCCACATGGACCACACCCACAGCGATCATGGTGGCAAGAAGTCACTAATGACATGTCGCTTCTGCCCTAAACAGTACATCAATGAGATGAGTCTTCTGAACCATGAAGCTAGTCATGGAGCAAGTGATGTTGGAACTGTCCAGTGTGAAGCATGCCCACGTATGTTCCACAACACAAAAGCCCTGGCCCGTCACAAACTCAAAGAGCATGGGGAAGGAAATTTCAATTGTGAGATCTGTAATAAACTTTTTGGAACCAAGGAATACCTGATGAATCATATGAAATCAAAACATATGCCGAAGGAAAAAACTGATCCTTTTACCTGCCATCGTTGCGGCAAGCAGTTTGAGAGGAAGCCAACATTTGTGATACATGTTGAAAGTCAATGCGGTACTCAACCACAATTCCCATGCTCTATTTGTGGCAAGGGTTTTGCTAGTCGAGGAAGCCTTGGAACTCATTTATTGATCCACACTGGGCAAAAATCATTTTTGTGCAGATTTTGTGGAAAGGCTTTCCGAGCAAAGGGTGAGGTGAAACGTCATGAAGTGAAGCACACTGGTGAAAGGCCATTCAAGTGCAAAATTTGTGGTGAGGGCTTCCCCTACCGTGAGTCGCTGGTGACTCATAGTGCTGTGCACACTGGAATTCAGCCATACTCATGCAAAGGATGTGGACGACGTTTCTCCTGTTCAAGTAATCTTGTGAAGCATAAAAGGGTTTACAATGGTCTATGTAGTGCAAGAAACCAAGGAAACCAGCCTGGTCCTGGCAATCGACGCAACAATGCTGGTTCCAATATGAACCAGGTCCATGCAGCTAATCAAGGCAACCAAGGAAATCAATCTGCCTCCATGTCTGCAGCCAACCTCTCTGCAACAAATTTGCCTTCGAATCTCACATCACCTGGTTTGTCAGCAGCAGATTTATCTGCTGCCAACTTGTCGGCTGCCAACTTATCAGCGGCCAACCTTTCTGCAGCTAATATGTCTGCTGCCAACTTGTCAGCTGCAAATCTGTCTGCTGCAAATTTAGCAGCTTCAAATTTATCTGCGTCTAGCTTATCAAGCAACTTGGCAGCCAATCTATCAAATAGCCTCAACAATATGTCAAACCTACCTGCTAATCTTGCTACCAATCTTGCATCAAACCTGGCATCTAATTTGGCTTCTAACATAGCAAACAACCTGGCTGCAAGTCAACAAGCTGCTCAAGCAATGCAGGCTGCTCAAGCCGCCCAGGCAGCCCAAGCTGCCCAGCAAGCTGCCCAGGCCGCACAGTTATCTCAGTCAGCTATTCAGGCTGCACAACATCAACTCAGCCAAGTTCTACTTGCAAATCACAATAATGAGAGTAATGACTCTATCCATGGAAGCCAACACCAGCTTTTAGCGCAGGCGCATCAGTCATCTCTCTCTCAAGCAAGTCTCCATATGAGGCCTCTTCAACTGTCTCATCATGCATCACGCACACCGCAGCCCCAGCCAACTCCATTATCCCACTCGCAGCTGGCCTCACCTCCACCAATGAGCCCAATACCATCACCTCTCCCTCACCAGACTCATCATTTGCAAAGCAATCATCACCAAATGCATCCCACCCATCTGTCGCAAAACCCACACCACCACCTTCACCATCTAACGCAGTTtaatcaccatcaccaccaatACAGTCAGCCTGCTCATCTGGGCAGCCAGCATCACCACCACCAAATGCAGGCAAATCACCACCAGCATCACCACTTGAGTCAACTAGCTCATCAGCAGCATCATCTGCCGCAGCCTCTTCAACTGACTCATCCTTCCCACCCATCACACCATGCACATATTTCCCACCAACAGAATCCCCATTCACATTCACCGTCATTGCTACCTTTGTCTTAA
Protein Sequence: MKLPPAADMSTAPISIMEIAHHKGDSSDNFRKGEQDYDYGLGSKWAGLVSEARELAARFNKDMSGGQDVLNMNLSENGHLGGEDQDLGDEEDEEDGDDDEEDEEGNENDDCPPSIPKSVSANIPVTVPVTEYGNGFPFANDVDHSSSDEDEGDDEEKNDLSVNANPFGIDMDPWSTDESSDSDDDAQNSIPLKYPNGDSLECKFCGKMFTKLFGLQRHEAAHEGKSLFQCRSCDQIFPSRNSCEKHKLDVHCTWKCHLCSQSFLKAKRLEVHIGVAHNGKFWDGKQLSDERPASEMFVCNQCGKSFTTKAVMKYHIESNCGSEPKFICPTCGKDCLSQDLLASHMSIHTGEKAYLCRFCGASYRLKGQMKVHERTHTGEKPFECNVCGKTFAHTISLTTHMTTHTAVKPFPCDLCDVSFSCVGNLVKHNKTPIHIAKVFSKGTLDQGDSVYQQQPHQSQNDRQLQFPVNEPLSQRNDDNSQDHLNFLGYLNGPAFPGVHPNGSSSHMWNHQPVDGEDQQQQQQQQQQQQQQQQQQQQQGQQQQSSSTSSYSGSGCSSGSGGGSGQQQPPEPPPPPHDQQNHDSGLVAVKTEPEDEDSEESSLANHTDPNTSVSSNPNASKSTIDDRSSPSPLDASNFNAANNDKPFRDRFDSDDDDNFWWAMDESDNDKGGEPLPVKVELDEGSGNEAIKPEVPVKRKRGRPKGSKTVNRRVDKEKNAKGKFTCTTCGKDLKFKSHLVRHSKMHQDEKKRKRRKKKKNKQRSPYTVSSSEDDNTDCDKDSFFDCVSEDEAMRLEQVKEEPIDDEEGHDAEGMNESREDNNAEDPSETPQIEGEVKVKKKRGRKKKSEMEGWEGGELGPDGELRKKRERKKPKEPCICGVCGKDLRFKSRLAAHIANHTAEDMKEKLTEKDSCCLLCNREFGSPENLKRHMDHTHSDHGGKKSLMTCRFCPKQYINEMSLLNHEASHGASDVGTVQCEACPRMFHNTKALARHKLKEHGEGNFNCEICNKLFGTKEYLMNHMKSKHMPKEKTDPFTCHRCGKQFERKPTFVIHVESQCGTQPQFPCSICGKGFASRGSLGTHLLIHTGQKSFLCRFCGKAFRAKGEVKRHEVKHTGERPFKCKICGEGFPYRESLVTHSAVHTGIQPYSCKGCGRRFSCSSNLVKHKRVYNGLCSARNQGNQPGPGNRRNNAGSNMNQVHAANQGNQGNQSASMSAANLSATNLPSNLTSPGLSAADLSAANLSAANLSAANLSAANMSAANLSAANLSAANLAASNLSASSLSSNLAANLSNSLNNMSNLPANLATNLASNLASNLASNIANNLAASQQAAQAMQAAQAAQAAQAAQQAAQAAQLSQSAIQAAQHQLSQVLLANHNNESNDSIHGSQHQLLAQAHQSSLSQASLHMRPLQLSHHASRTPQPQPTPLSHSQLASPPPMSPIPSPLPHQTHHLQSNHHQMHPTHLSQNPHHHLHHLTQFNHHHHQYSQPAHLGSQHHHHQMQANHHQHHHLSQLAHQQHHLPQPLQLTHPSHPSHHAHISHQQNPHSHSPSLLPLS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -