Ffus006544.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella fusca
Gene Symbol
-
Assembly
GCA_029379305.1
Location
JAHWGI010000312.1:619665-623168[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0011 0.093 14.0 0.1 2 23 285 307 284 307 0.95
2 16 0.0015 0.13 13.5 1.1 1 23 329 351 329 351 0.97
3 16 0.0022 0.19 13.0 1.5 2 23 364 386 363 386 0.95
4 16 0.00014 0.012 16.8 0.4 1 23 394 416 394 416 0.98
5 16 0.00079 0.068 14.4 5.3 1 23 422 444 422 444 0.96
6 16 0.00019 0.017 16.3 1.1 1 23 453 475 453 475 0.98
7 16 5.9e-05 0.0051 18.0 1.3 1 23 481 503 481 503 0.97
8 16 1e-06 8.8e-05 23.5 2.3 1 23 509 531 509 531 0.99
9 16 0.0024 0.21 12.9 0.2 1 23 537 559 537 559 0.98
10 16 6.4e-05 0.0055 17.9 1.5 1 23 573 595 573 595 0.97
11 16 0.017 1.5 10.2 3.4 1 21 600 620 600 623 0.95
12 16 0.023 2 9.8 1.6 1 23 629 651 629 651 0.97
13 16 0.024 2 9.8 5.9 1 23 657 679 657 679 0.98
14 16 1.1e-05 0.00098 20.2 1.5 2 23 686 707 685 707 0.97
15 16 0.00017 0.015 16.5 4.9 1 23 713 735 713 735 0.97
16 16 0.00078 0.067 14.4 4.4 1 23 742 764 742 765 0.93

Sequence Information

Coding Sequence
ATGGATGCATGTCAGTCACATTCTACTGTTGAACCATGTAAACTAAATAATGTCAACAATGACATGCATGCATCAAGAATGACAAATAGTACCAGTTATCAAGGAAATATTGGGACTGTCAACATTGACTTTTCTTCTCAAGCATATGATGGTATTAAACCCAAGTGCACGCTGGAGGGGAAAATGGATAAGTTCTCTGAATTTCCTTCTGAAACTCGGGCTGTCAATGACAGTAATATTCAAGTTGATGTGTGTGAATCAGATCAGTCTCAGATTCTTTATGTTGGCACAGAAGTTGAAATGAAGTCAGCTTTTAATAGTATGGAGACGCAGATGACACCTGTCATTTCAGCGGATTCTATAAATTCGTCAGTGTTGTTCACTAGTCAAGCACTGCAGTCTCTCAAATATGAATGCATGTGCCGGATTTGTGCCTGTGAAACTGACAAGTATATACCTTTGTTTGGCAGTGAGGGTACATCTCTTGGTCTTATTGACAAGATTCACCACTGTCTTCCGATTAAgATATCTGAAAGTGACGGCTTTCCGCAACAAATATGCAATTCTTGTGCTTCCAAACTACAGACATCTCATGAATTATTAAATATCAGTGTAGCAGGAGATGCAAAACTCAAAGCATTGAGCTTAATGGTGTCTCAGTTGGAGTTACCAGTTCGCTGTAGTTCTACAAAAGATAGTGAAACAGAGGAGAATGATGCTACTGCACTTAGTCCTAAGATATTAGAGACGTCAAGTACTACACAAACATTTAAGAGAGAATTTTCCGAAATCTGTGATGATGTCAATCAACAGTGTTTTGTGCTGACTGATGAAGCTGACAAAAGACCTTGGAGCTGCCCAGAATGTGATTACAAAGCTTCAAGACAAACTGCTTTGGCTTTGCACATGCAAAACAAGCATAACTTTCAAAAAAATGAACTTCACAATCATAATCCACATGAGACAGATGCAGAAAAGTTAGAGTTTATTTGTGTGCAATGCAAAAAAGGTTTTGGTTCAGAAACCAAATTAAAAAAGCATACTCTGATGCATACAAAGTTATCATCAGAGGAAAAAGCTGCCACATTGTCTTGTACATTTTgttctgaaaaattttccaccTTGAAAATGCTTCGGGAACATGTAAAGAGTAGTCATAATGTTGAGGAAGAGCCAAAATACAACTGTGATAAATGTGATAAATCTTACCGCCTTGCCAGTAGTTTAGATATTCATCGTGCTACACATTCCAATGAAACACCTTACCTTTGTGATGTATGTGGAAAAAGTTTCAAACATGGTTCTAATTTACGATGTCACAGAAGATCTCATGTAGATGGGCAGCTCACCCATCGTTTCAGCTGTGAAAGGTGTCCTAAAAAATTTCCATCAAGATTCCAATTGAGTGAGCACACAAATGTGCACTTGAACATAAAACCTTATGCCTGTGGTGTATGTGGCAAAAAATTCCATCGAAGGATTCAGCTGCGGCAACATCGAATTATACATAACAGTGATAGTTCATATGAATGTCCACAGTGTGGTGTTTGCTTTAACCGTCGGGGCAATATGACTCAACACATGAAAAGGCATTCAAAAGAACCAAAATACGTTTGCAAGgtttGCACAGAACCCTTCCAAAGTTTAAGTGAAGTAGTTCAACATAGACGAGAGCATACTGAAAAAGAAACAGCTGACCACATGGAGAATGGGGAATTTTCTTGTACAAAGTGTCAAAAGAGTTTCAGTAGTTCAGGTGACTTAGATGAACATTCAAAATCACACTCTGATATCAAATTTGAGTGTGAGATTTGCAAGAAGACTCTTTCTAACCGTAGAACACTGGACTACCACATTCGCTGTTTCCACACTCAGGAACGTCCATTTTCATGCCAGTACTGTTCTGAATCATTTGTTTCTCGTGAAGGTTGCACAGTCCATGAAAGAATTCATACTGGTGAGAAGCCATACTCATGCTCTAAGTGCAAAATGACTTTCCGATGCTCCAGAAATCTTTCCCAGCACTTAAGTACCCACAGTGATGACCGACCATGGTCATGTGAGCACTGCCCTAAAACTTTTAAGAGGAAAGGTATACTGTTAGTTCATATGCGAACTCACACTGGGGAAAAGCCGTTCTGCTGTGAAATATGTGGCCGGAGATTTGCTCAAAAAAATGATATGCTGAAGCACCAACATACACATTCATCTGCAAAACAAACCTTTTTATGTGCTGAATGCAGCTGGCCTTTCCATACTCGGAAAGAATTGAACAAGCATCGTAGAACTCATCACTCGTCAGTAGAAGTCCAAACAAATGCCACTATTGCTGCTGCCTCAACTTTAGAATCTCAAGCCCTTCTTATCAGAGATGATTTAAGCCAGTTTCCTGTTACTATTTTGGAAGAAGGAAGTAATTTAATAGTGCATCAAATTGAAGAGTTGGGAAAGCAGACTCAAATAGTTGAACTGAACCCAAATGAACCTAATTCCCATATAATTCACTTCACGGATTCTTTGCTGCAAACTGTTGTTCCTCAGTACCAAATTCTTACTGTTCAAGCACCTTGTGGTCAACAAATGGTTCATTTTGATGGAAGTCCTTCAGTGACCACCTCATCTACTATTGTAACTAGCTCTAGCTCTACCTCCCAACAAAGCTGGCCTACCAATTGA
Protein Sequence
MDACQSHSTVEPCKLNNVNNDMHASRMTNSTSYQGNIGTVNIDFSSQAYDGIKPKCTLEGKMDKFSEFPSETRAVNDSNIQVDVCESDQSQILYVGTEVEMKSAFNSMETQMTPVISADSINSSVLFTSQALQSLKYECMCRICACETDKYIPLFGSEGTSLGLIDKIHHCLPIKISESDGFPQQICNSCASKLQTSHELLNISVAGDAKLKALSLMVSQLELPVRCSSTKDSETEENDATALSPKILETSSTTQTFKREFSEICDDVNQQCFVLTDEADKRPWSCPECDYKASRQTALALHMQNKHNFQKNELHNHNPHETDAEKLEFICVQCKKGFGSETKLKKHTLMHTKLSSEEKAATLSCTFCSEKFSTLKMLREHVKSSHNVEEEPKYNCDKCDKSYRLASSLDIHRATHSNETPYLCDVCGKSFKHGSNLRCHRRSHVDGQLTHRFSCERCPKKFPSRFQLSEHTNVHLNIKPYACGVCGKKFHRRIQLRQHRIIHNSDSSYECPQCGVCFNRRGNMTQHMKRHSKEPKYVCKVCTEPFQSLSEVVQHRREHTEKETADHMENGEFSCTKCQKSFSSSGDLDEHSKSHSDIKFECEICKKTLSNRRTLDYHIRCFHTQERPFSCQYCSESFVSREGCTVHERIHTGEKPYSCSKCKMTFRCSRNLSQHLSTHSDDRPWSCEHCPKTFKRKGILLVHMRTHTGEKPFCCEICGRRFAQKNDMLKHQHTHSSAKQTFLCAECSWPFHTRKELNKHRRTHHSSVEVQTNATIAAASTLESQALLIRDDLSQFPVTILEEGSNLIVHQIEELGKQTQIVELNPNEPNSHIIHFTDSLLQTVVPQYQILTVQAPCGQQMVHFDGSPSVTTSSTIVTSSSSTSQQSWPTN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-