Ffus001902.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000083.1:206604-211474[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.016 1.3 10.4 2.7 1 23 297 319 297 319 0.95 2 13 0.00038 0.033 15.4 1.2 1 21 324 344 324 348 0.92 3 13 2e-05 0.0017 19.5 0.2 2 23 373 395 372 395 0.95 4 13 3.3e-05 0.0028 18.8 2.3 1 23 401 424 401 424 0.97 5 13 0.003 0.25 12.6 0.2 1 23 447 470 447 470 0.90 6 13 1.4e-06 0.00012 23.1 2.8 1 23 476 498 476 498 0.98 7 13 4.3e-06 0.00037 21.5 0.6 1 23 504 526 504 526 0.98 8 13 0.0016 0.14 13.5 4.5 1 23 532 554 532 554 0.97 9 13 4.2e-07 3.6e-05 24.7 3.9 1 23 560 582 560 582 0.99 10 13 2.5e-05 0.0021 19.2 5.8 1 23 588 610 588 610 0.97 11 13 0.91 78 4.8 6.3 2 23 617 638 616 638 0.96 12 13 4.8e-05 0.0042 18.2 0.9 1 23 644 666 644 666 0.98 13 13 3.4e-07 2.9e-05 25.0 1.9 1 23 672 694 672 694 0.98
Sequence Information
- Coding Sequence
- ATGGAGGTGGAGTTGTACAATTCTATGATTTGTAGACTCTGCGCCGCAGAAAATTCTAACGCAACTTTATTGTACTCTCCCGACGATAGTGGAGAGTGTTTGAGCTCATTGGTTAACAAGTATTTACCTTTACAGATCTGCGATGATGGCAAACTTCCCCGCACCATATGCCCACCATGCAATCTACAGTTGCATTCAACCAGAGCTTTCCTTGATCATGTTGTACTTGGTCAGCAGAAAATACGGGACTTATGGAAACAACAgGTGGAACATCAGAAACGTCTGGAGAAAGAAAGACTCCGGATAACTCAAGGACAGGAAATTATTATTCCTGAAACAATAACAACTGATGATGGGACTGAGGCTCAAATTCTTATTCACTTGCCAGATGGCACTTTGTTCACAGCAGAGCACAGTCTTTCATTAAAAATGGAAGGCTTAGAGAAGCCcaaaaggaaaaggggaagaCCACCCAAGCTACGCCCAGATCCAGAGCAGACAGTTTCTCCTACTGAAGCCACTACAAGTACAGACAAAGAAACCGAACAAACTTTAAATGAGTCCATGGAACAGGATGATGGAGAAGAGGATGGTGAAGATGAAGGAGAaggaagacgaagaagaaggaagaagaTTCCTCGAAGatttATGGAAGCTGTTCAAGGAAAGGAGCTTGAAAGAATGTTTAGGGAGGAAGGTGTGattgatgaggatgatgatgatgcaggGAAACATAATAATGATATTTCAATACCTACACCGTCTTCCAAGGATGAAGTTATTGGACACCTGGAAACTCCAGATGGTGAGAATCTAGGGGAATTGGTCATTGTGAACCGGGGTCGAGGACGTGGAAGACCCCGCAACTCGAAGAAGCGGAAGATTAATTTTGAGTGTGAAATCTGTGGAAGAGGTTTTCAACATCGCAGCAGATATTTATTACACAAGAATTTCCACAAAACTATGAAATATGAATGTGCTACATGCCAGAAACAGTTCAACAGCAAAGAGAACTTGGAATTACATCACAAAGCACTGGAACATGCAGGAGAAGTAATTATTGAAGTCCCCTCTGAGGAGACCAAAGTGGACGAGGGACCCAATGAAAATAAATTGGTTTGTGAGAAATGTGATAAAGAATTTTCTACTAAGGACGATTATGAGCTTCACTTGCAATCAGTACATGGTGGTGAAAAACCTTTCAAATGTCATGTATGTCCCATGACTTTTCCGTATCAATCCAGTCTTAGATACCACATTACATCTCAGCATGATGGCAATTCAGAACAAGCCTCTACTACAAGTACTAATGATGCAAAGCCTGATGGGAAAGGTGGTTATGAGTGCGATATTTGTGGTAAAGTTTTGAATCATCCAAGTTCTGTTCTGTACCACAAGGAGGCTGAACACAATGATGGGCGCCGATTTGTGTGTAGCAAATGTGGAAAAGGATTCAAACACAAACAACTACTTCAAAGGCACCAGCTGGTTCATTCAGATGATAGACCGTACGTTTGCAATGATTGTGGTAGTAGCTTTAAAACCAAAGCAAATTGGCTCAACCACCAATCAACTCATACAGGAGAGAAGAAATTTTTCTGTGATCTTTGTGGGCATCAATTTGCACATAAAACAAGTCTTACCCTGCATTATAGATGGCATGCTGGACATAAACCTTACGAATGCCATGTGTGTCACAAAAAGTTTTCCCAAAATGGCAACCTTCAAGAGCATCTCCGAATTCACTCTGGTGAGAAGCCTTTCTGTTGTGATTATTGTGGTCGTAAGTTCACAACGTCATCTCAGTTCAAGCTTCATGTGAAAAGACATACTGGAGAAAGACCTTGGAAATGTGAGTTTTGTGGAAAGTCATTTTTACACAAAGATACATGGAAATGTCACACTAGGAGGCATAAAGGTGAAAAGCCTTTCCGCTGTAATTTCTGTGCTCGTGGTTTCACTGAACAGTGGGCTTTGAAGAAGCATATGCGTCTGCACACTGgtgaaaAGCCATATTCATGTAATGTTTGTGGAAAGGCCTTTGCTGATTGTTCAAACCTTACAAAACACAAAAAGGTTCATAGAGAAAATAAAGTACCTCTTGGAAACAATGTTCCCATGGATCGGGCTGTATGGAACATCATCAGGACTCAGATGACTGATGACCTCAGTGGTACTGCTCCTGGAGATGATATGGTTGGTGTAGGTATTGTGCCTACTGCACCTGGAGCTTTAACCACTGTGAATGAAGATGGAGAAGCTGTCCAGCAAATAATTTATGTGTCTTACCAAGACCCCAATGATCCTACTGAGTCGCACACATTGCACATTGTGGATGATGTAGCTGCTGGAGCATCAGATGATCTGAAACTTCTCTCAACTGGGGATGACACAACTCATTTAGGTGGTGATCCGCTCGTGGGGGATGCTGCTTCAACCTTGGATCTTGGGCAGTTAATTGCACCCCAGGGCCTCCCTGTCACGGATGAAGAGGGAAACCCAATTCATTTCACAATGCAGGATGGCAGTCAACTTCAAATAACCACTCCTGATGGACAATCATTGATGGTGACTACAGAAGATGGCAGAGCTATTCCGGTTCAGTTAACAACTCCAGATGGACATCCCATTTCTACCGGTTTCTCCACTGCTGATGTGTCTTCTCATTCACAGCTGCAAGTCACTTCAGACCTGAGTGGCAAGGCATTGGCATGTGTAGGAGATGGTCTTATTGTAgaACATGGAGGAGTTGGGGGTGTTGACACAGATACTGATGTGGAACAGCATATAGAATTTACAACCGAAGATGGCAGAAAACTGCGGTTTGTTGCCTCCTCTGATGTCAACCAGCTCCAACTTGTAGATTTGATGTCTGCTCATATGTCTCAAGTAAGTGTGCAGTAA
- Protein Sequence
- MEVELYNSMICRLCAAENSNATLLYSPDDSGECLSSLVNKYLPLQICDDGKLPRTICPPCNLQLHSTRAFLDHVVLGQQKIRDLWKQQVEHQKRLEKERLRITQGQEIIIPETITTDDGTEAQILIHLPDGTLFTAEHSLSLKMEGLEKPKRKRGRPPKLRPDPEQTVSPTEATTSTDKETEQTLNESMEQDDGEEDGEDEGEGRRRRRKKIPRRFMEAVQGKELERMFREEGVIDEDDDDAGKHNNDISIPTPSSKDEVIGHLETPDGENLGELVIVNRGRGRGRPRNSKKRKINFECEICGRGFQHRSRYLLHKNFHKTMKYECATCQKQFNSKENLELHHKALEHAGEVIIEVPSEETKVDEGPNENKLVCEKCDKEFSTKDDYELHLQSVHGGEKPFKCHVCPMTFPYQSSLRYHITSQHDGNSEQASTTSTNDAKPDGKGGYECDICGKVLNHPSSVLYHKEAEHNDGRRFVCSKCGKGFKHKQLLQRHQLVHSDDRPYVCNDCGSSFKTKANWLNHQSTHTGEKKFFCDLCGHQFAHKTSLTLHYRWHAGHKPYECHVCHKKFSQNGNLQEHLRIHSGEKPFCCDYCGRKFTTSSQFKLHVKRHTGERPWKCEFCGKSFLHKDTWKCHTRRHKGEKPFRCNFCARGFTEQWALKKHMRLHTGEKPYSCNVCGKAFADCSNLTKHKKVHRENKVPLGNNVPMDRAVWNIIRTQMTDDLSGTAPGDDMVGVGIVPTAPGALTTVNEDGEAVQQIIYVSYQDPNDPTESHTLHIVDDVAAGASDDLKLLSTGDDTTHLGGDPLVGDAASTLDLGQLIAPQGLPVTDEEGNPIHFTMQDGSQLQITTPDGQSLMVTTEDGRAIPVQLTTPDGHPISTGFSTADVSSHSQLQVTSDLSGKALACVGDGLIVEHGGVGGVDTDTDVEQHIEFTTEDGRKLRFVASSDVNQLQLVDLMSAHMSQVSVQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435289;
- 90% Identity
- iTF_00733376;
- 80% Identity
- -