Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010000312.1:623421-627624[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3 2.6e+02 3.2 0.1 8 21 134 147 133 148 0.90

2 18 0.43 37 5.8 1.1 1 23 449 471 449 471 0.96

3 18 0.00092 0.079 14.2 0.3 1 23 520 542 520 542 0.98

4 18 0.0037 0.32 12.3 1.2 1 20 551 570 551 573 0.91

5 18 7.1e-06 0.00061 20.9 1.8 1 23 582 604 582 604 0.98

6 18 0.072 6.2 8.3 0.4 1 23 613 635 613 635 0.97

7 18 8.1e-06 0.0007 20.7 2.9 1 23 644 666 644 666 0.98

8 18 2.1e-05 0.0018 19.4 1.6 3 23 674 694 673 694 0.97

9 18 4.4e-05 0.0038 18.4 1.3 1 23 703 725 703 725 0.98

10 18 0.03 2.6 9.4 5.1 1 23 731 753 731 753 0.96

11 18 2.6e-05 0.0022 19.1 0.8 1 23 759 781 759 781 0.98

12 18 5.5e-05 0.0047 18.1 2.3 2 23 813 835 812 835 0.94

13 18 0.0019 0.16 13.3 0.3 3 23 848 869 846 869 0.96

14 18 0.0077 0.66 11.3 0.5 1 23 875 897 875 897 0.97

15 18 4.7e-06 0.0004 21.4 0.9 1 23 903 925 903 925 0.97

16 18 2.7e-05 0.0023 19.1 5.1 1 23 931 953 931 953 0.98

17 18 0.00011 0.0091 17.2 1.2 1 23 959 981 959 981 0.98

18 18 0.063 5.4 8.4 2.8 6 23 991 1008 988 1009 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3	2.6e+02	3.2	0.1	8	21	134	147	133	148	0.90
2	18	0.43	37	5.8	1.1	1	23	449	471	449	471	0.96
3	18	0.00092	0.079	14.2	0.3	1	23	520	542	520	542	0.98
4	18	0.0037	0.32	12.3	1.2	1	20	551	570	551	573	0.91
5	18	7.1e-06	0.00061	20.9	1.8	1	23	582	604	582	604	0.98
6	18	0.072	6.2	8.3	0.4	1	23	613	635	613	635	0.97
7	18	8.1e-06	0.0007	20.7	2.9	1	23	644	666	644	666	0.98
8	18	2.1e-05	0.0018	19.4	1.6	3	23	674	694	673	694	0.97
9	18	4.4e-05	0.0038	18.4	1.3	1	23	703	725	703	725	0.98
10	18	0.03	2.6	9.4	5.1	1	23	731	753	731	753	0.96
11	18	2.6e-05	0.0022	19.1	0.8	1	23	759	781	759	781	0.98
12	18	5.5e-05	0.0047	18.1	2.3	2	23	813	835	812	835	0.94
13	18	0.0019	0.16	13.3	0.3	3	23	848	869	846	869	0.96
14	18	0.0077	0.66	11.3	0.5	1	23	875	897	875	897	0.97
15	18	4.7e-06	0.0004	21.4	0.9	1	23	903	925	903	925	0.97
16	18	2.7e-05	0.0023	19.1	5.1	1	23	931	953	931	953	0.98
17	18	0.00011	0.0091	17.2	1.2	1	23	959	981	959	981	0.98
18	18	0.063	5.4	8.4	2.8	6	23	991	1008	988	1009	0.93

Sequence Information

Coding Sequence: ATGAACTCATCAATTTTCCATCCGAAAGGAGTGACCTCAAATTATTGGGGTGAGCAACAGGTAAATTTTGAGAGGATGTGCCGCATATGTGGagcgtacaatgattatttGCTCCCCATTTTTGACTTGGAAGGGGAAAAGCACCATCTCGACCATAAAATTTACATGTATCTTCAGCTGCAGGTGCGGAGGGAGGACCTACTGCCTTCACAGCTTTGCTACGAATGCATGTCATCAATATTATCGTGGCATGTCCTTTACCAAACCTGTCAGGAGGCACACAACAAATTTCAAGCAATGTTGAAACAATCTGAGATGCCTGTCGGGCAGGAGTCAGTTCTTATTTTACCACCCAAGAATCCAGAGCATTCCCAATTTTCATATCAGGACTATTCTGAACAAAGCTTTACCACAAGTTCGCAAATTAATGCTCATCATAGAATTGATGTTACTAGCCCTGGTCAATACCTGATGCCTAGTATGCAACATATGACTGGAAACCAACTGATCACAGACAAAGAGAATGATAGGCCACCTCAACTTTATAATGCTACTGAGGAAGTGAACCTGGACTCAGAAATCCCTTCTCCTGAAGTAAGCCAAGTAATAGCAAGCATATCACATATTGTGTCAAATATTTCAAATGAAGTTCAAGGACATGCAGAGTTGTCCAGCGTGAACCCTCAAGCACAAAGTTTTATAGAGAACAAGTCTGAGTATGAATGTTGCAAAAGCAACAAAGATGCAACTgtaaaaaaattgtcaaaacaAACAAgccttttgaaaaaaaaaggcagtcCCTCAACTTCGGAGAGTGGCGTATTTCCTCCTAAATCACCTGTTAAATTAGATGAAGATGCTTCATCTGGACAGTATCCAAACCGTGTATCAACAATCCAATCAACCACCAACCATGATTTTCAAGGAGGAACCTCTAGGTCAAAAAGCGTCCTTGTGAGGCATGAGTCAATATACCCCTCGGTTCTGGTGTCTGCTGGTCAAAATGTTTCTGATATTGTTAGACCTGAAAGAAGTACTTTTATTGAGTCAGCTGTTATAAGAGAACATCGTAATATAGGCAGAGTAAATAATGATGGGATAGGCACCATGGTATCTGTTGTAAGGCCAACCTGCTTAAGGCGGGCTCCCACTGCAGTTGTTGTGATAGAAAATATTGGCGCACACTGTGATTTGAAATCAGAGAGTAGCAGAGATCAACTCTGTGCTCAGCTTGATTCAAGTAATACTATTGCTCAGGATTTATCAGAACTCAAAGGTGATTGTACAAAAAATGGTTCTTCCATAAGATCATCTGAGGGAGAAGCTGAAGGTTTAGATCCATCTCATATCTGTTTTTTATGCAAAAAATATATAAGTAATCCAATATTGCTGCTTTCCCATGAAAAGTCCCATCTAGCTGATTCCAACCCTCCAAACAGTTTTATCTGTAAGTTTTGTTCACATCCTCAAAACTCTCTTCAGGAGATGCATCTGCATTATGCAACACATGAAGTTGAGATgggaaaacatcagaaaaatcaaggcAATAGAAGGGTTTACATTTGCAAGCAGTGTGGACTTGTATGTGCAACAGAAGAGCGCTTGGCCGCACATCAGCGCTTACATTCTGACAATGTTGAATCATTCAGACATGAATGCAAAACATGTGGAGAAAATTTTATCACTCGAACCAAATTGAGCGTTCACCTGTGGACACATGCTTTAAAACCATCACTCAGAACTTTTAAATGCCATATATGTGGAAAAGGATTTCCAACAAAGTCATCTGTGATGGAACATCGTCTGAAACACACAGAAGAGGAGAAATCTCGTGCTTTTAAGTGTATTGTCTGTACAATGGCATTTGGGAACAACACACTTTTGGGAAAGCACCGATTAACTCATACTCAAGAGGAATTAGCAAGGCCTTTTAAATGTACATTTTGTGGCAAAGCATTTGCAAGGAACCACACTCTTCAAATTCATTATTTATCACACTCGgatcaaaaaaataatatgtgCAATCAATGTGGAAAAGGGTTTAAAATGCGTAATTCGTTGATGCAACACCTGCGAACACATCAGGATCCAAGTGCCTTGCCTTCATACCCATGTAATCTCtgcgaaaaaaaatttagagtaaaATCTCGATTGCGAGATCATTTACGTCTACACAGTGGAGAGAAACCTTTTGTATGTGAGACATGTGGAAAATGTTTTCACAAGGTAACTGCTTTGCATACCCATGAAATAAGTCACAGTGAAAGAAGAGCCTTTAAGTGTGACATTTGTGGGAAAGCATTTAAATGGAGTAAAAACCTCCGACAACATAAACTAATACATGTAGGTGTAACTAGAGGCAAAGCACAACCTCAGCCAAGTGCAAGCAGTTCTCAAAGTTCTGCTCTAAAATCAAAACCAAGGCAGAAGTTATGTAGTTGTGGACTGTGCGGGAAAGAGTTTTCCAGTAAGGGCAGCTTGCGGCAGCATAAGAAAAGTATTCATGATGAGAAAGTAAACAAGTCAGTCAAGGCAACAATATGTTCAATATGTAGCAAGGAGCTTTCCAATACAGCCGGTCTCAGTAGGCATATGAAAATAACTCATGGAGGATTAAAGGCATTCATATGTGACATTTGTAACAGAGAGTACTCAACAAAAGTTGCAAGAGATGACCATCGACGGTCTCATACTGGCGAGCGCCCTTATACTTGCAGTATATGCCCTAAggcattttcttcactttcaaaTCTTCACATTCACAAAGCATCACACAGTGATGATCGTCCTCACAAGTGCCCGTACTGTGACAAGCAGTTTAAAAGGCGCACTCATCTGGTGCCACATATTCGCACACATACAGGAGAAAAACCATATATCTGTGATGTATGTTCTAGAGGTTTTGCACAGAGTAACGACCTACATAAGCATCGCCTCACTCATTCAAATGATAAGGCTTTCACATGTTTCTGTGGTCAAGCTTATCGTATAAAACGAGACTTAAACCGTCACCAAAATAAACATCATTCTCATAGCTTACCAGAGGCACAAACTGAAGTGGTCTCAGAATTGTCTGAACTAAAGACTGAGGTAGAAAGATCTCACCAAAAGCAGCAAATAATAGTAACACCAGGACTTAACTCTGCAGCTTTAAGTTTTAGTTCCAATCAAACTAATGCTAATAGTGTAATTTCATCGACATTAGTTTTCTGCAGTTCAGAAGAGACAGACAAAAGGTGA
Protein Sequence: MNSSIFHPKGVTSNYWGEQQVNFERMCRICGAYNDYLLPIFDLEGEKHHLDHKIYMYLQLQVRREDLLPSQLCYECMSSILSWHVLYQTCQEAHNKFQAMLKQSEMPVGQESVLILPPKNPEHSQFSYQDYSEQSFTTSSQINAHHRIDVTSPGQYLMPSMQHMTGNQLITDKENDRPPQLYNATEEVNLDSEIPSPEVSQVIASISHIVSNISNEVQGHAELSSVNPQAQSFIENKSEYECCKSNKDATVKKLSKQTSLLKKKGSPSTSESGVFPPKSPVKLDEDASSGQYPNRVSTIQSTTNHDFQGGTSRSKSVLVRHESIYPSVLVSAGQNVSDIVRPERSTFIESAVIREHRNIGRVNNDGIGTMVSVVRPTCLRRAPTAVVVIENIGAHCDLKSESSRDQLCAQLDSSNTIAQDLSELKGDCTKNGSSIRSSEGEAEGLDPSHICFLCKKYISNPILLLSHEKSHLADSNPPNSFICKFCSHPQNSLQEMHLHYATHEVEMGKHQKNQGNRRVYICKQCGLVCATEERLAAHQRLHSDNVESFRHECKTCGENFITRTKLSVHLWTHALKPSLRTFKCHICGKGFPTKSSVMEHRLKHTEEEKSRAFKCIVCTMAFGNNTLLGKHRLTHTQEELARPFKCTFCGKAFARNHTLQIHYLSHSDQKNNMCNQCGKGFKMRNSLMQHLRTHQDPSALPSYPCNLCEKKFRVKSRLRDHLRLHSGEKPFVCETCGKCFHKVTALHTHEISHSERRAFKCDICGKAFKWSKNLRQHKLIHVGVTRGKAQPQPSASSSQSSALKSKPRQKLCSCGLCGKEFSSKGSLRQHKKSIHDEKVNKSVKATICSICSKELSNTAGLSRHMKITHGGLKAFICDICNREYSTKVARDDHRRSHTGERPYTCSICPKAFSSLSNLHIHKASHSDDRPHKCPYCDKQFKRRTHLVPHIRTHTGEKPYICDVCSRGFAQSNDLHKHRLTHSNDKAFTCFCGQAYRIKRDLNRHQNKHHSHSLPEAQTEVVSELSELKTEVERSHQKQQIIVTPGLNSAALSFSSNQTNANSVISSTLVFCSSEETDKR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -