Ffus022401.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010001301.1:2412882-2418522[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00012 0.01 17.0 0.2 1 23 260 283 260 283 0.93 2 20 0.0096 0.83 11.0 1.5 1 19 290 308 290 310 0.96 3 20 0.00045 0.039 15.2 0.6 1 23 450 473 450 473 0.93 4 20 0.0096 0.83 11.0 1.5 1 19 480 498 480 500 0.96 5 20 8.8 7.5e+02 1.7 0.2 3 23 538 559 536 559 0.93 6 20 0.024 2 9.8 0.0 3 23 629 651 629 651 0.90 7 20 0.11 9.4 7.7 0.2 1 23 685 707 685 707 0.94 8 20 5.6e-05 0.0048 18.0 1.4 1 23 713 736 713 736 0.97 9 20 0.093 8 7.9 0.2 1 20 741 760 741 764 0.90 10 20 0.69 59 5.2 0.2 2 23 768 792 767 792 0.89 11 20 0.026 2.2 9.7 0.0 1 23 829 852 829 852 0.96 12 20 2.6e-05 0.0023 19.1 0.0 2 23 861 882 860 882 0.96 13 20 2.2e-05 0.0019 19.3 1.3 1 23 888 911 888 911 0.94 14 20 2.5e-06 0.00022 22.3 2.1 1 23 917 939 917 940 0.96 15 20 0.0053 0.46 11.8 1.4 1 23 947 970 947 970 0.95 16 20 0.0025 0.22 12.8 0.1 1 23 976 999 976 999 0.91 17 20 0.0014 0.12 13.6 1.7 1 23 1005 1027 1005 1028 0.95 18 20 0.00036 0.031 15.5 1.5 1 23 1033 1055 1033 1055 0.97 19 20 0.0016 0.14 13.4 3.9 1 22 1061 1082 1061 1082 0.96 20 20 0.00033 0.029 15.6 1.8 1 23 1089 1112 1089 1112 0.95
Sequence Information
- Coding Sequence
- ATGATTTTGGTATCATATATTGATATTTTAGACTACATACATGATGATAGACAGTGCCTCATCGAGGGAGAAGAGCTGTTTAATGAGAATAAAGTCAAAAATGTCAGTGTATGCTGCAGAGATATCCATAATCTCTTAGAAGTGAGTGCTCTGTGCGCTTGCAGCAATGAACCAAACTCAAAAGACTGCCAAATATCAATTGAAATCAATCAAGAAGACACAAAGGGTATATCCTCTAGTTGTTCGTGTAAATCTGACCGCCCTAGCAAATGCCAACATGTAGTTGCCACCTTAATCCATTTACACAGGCACCCACCTCGTCAGAATCAGAGAGATCTTTCAGAGAAGATAGTAAGCACAACTAAAAATGATTTAACTGTAGTTACCGAAGAACCAGGCTGTCGATCTACAGAGCATAACACATACCGTGAACTAAGGAGTAAACGCAAAACAACTATCACCAACAACTCAAAAAAAGATGATTTTAGAATTGTCAACACCAAGCGACGACCTGGCACTGAAGAAGCCATTGAGGATGATCCAACATGGGAGAAAGAGAATGACAGAGAAGAAGATGAGGCCTTTGATTGGATGCAATCCTCTGATGATGAATGGGAGCCCATTCCTGAAAAGAAACGTAAAAGAGACTTACCACTGCTTCCTGCTAAGGGCTCGAAGGAGAAGATTGGgaaaaaaaggaatagGATGACAAAAGCTGAAGCAGAAAAGAAGGCAAGAGAATTCACATCTGGGCTACAATCAAGAGAAGATGGTCATTTTTTATGTTCTATCTGTGACCGAACATTTCCCAAACTCAATGAACTTCAGGAACACATCAGAGATATTCATTTTTTGAAGAAGGAAGTTTTTTCCTGTTGTAAATGTGATAAGACATTTAGACTACTCAGAATGCTTAAAGCGCATGAAGGATCCTGTGATGTGAATTCTGAAGACAATGAAGGGTCAGTTACTGAAGAAGTGCAGAGAGTAGAAGCAGAGGACGAGGCACCAGAGGCAGCGTTAAAGTTGGAGCCACTCCCGTTTTTGCTCTGTGAGGTCGTGACTGCAACTCGGCGACGACCTGGCACTAAAGAAGCCATTGAGGATGATCCAACATGGGAGAAAGAGGACGACAGAGAAGAAGATGAGGCCTTTGATTGGACGCAATCCTCTGATGATGAATGGGAGCCCATTCCAGAAAAGAAACGTAAAAGAGACTTACCACTGCTTCCTGCTCAGGGCTCGAAGGAGAAGATTGGgaaaaaaaggaatagGATGACAAAAGCTGAAGCAGAAAAGAAGGCAAGAGAATTCACATCTGGGCTACAATCAAGAGAAGATGGTCATTTTTTATGTTCTATCTGTGACCGAACATTTCCCAAACTCAATGAACTTCATGAACACATCAGAGATATTCATTTTTTGAAGAAGGAAGTTTTTTCCTGTTGTAAATGTGATAAGACATTTAGACTACTCAGAATGCTTAAAGCGCATGAAGGATCCTGTGATGTGAATTCTGAAGACAATGAAGGATCGGTTACTGAAGAAGTGCAGAGAGTAGAAGCAGAGGACGAGGCACCAGAGCCAGCGGTAAAGTTGGAGCCACTCGCGTGTCTGCTCTGTGAGGTCGTGACTGCAACTCGGCGTGAAATGCACGATCATTATTTGAGTGCTCACCGGGGGCAAGAAAAGGACAACGTTTCAGTATGTGACCGTTGCGGCGAATTTCGCCTTCCTAGAGAGCACATCTGCCCCTCGCAGCTGTCCTTCCAATGCCAcatgtgccgcgccgcgcccttcaAGGCCGGACGCGACTACTGGAACCACCTGATCCGCGACTCGAAGCGGCACGCCTcggcctcgacggcgtcctcgcggtggtggtgcggctgggcgggctgcggcgagcgcttcccctCCGAGGCCGAGCTGCTGGCGCACGCGCGCCTCCACCtgcccgcgcacgccccgctCATGTGCAGCGTGTGCCTGCTCTTGCTGCGCAACACGGACGCCAAGGTCGTGCACACGGAGCGGCACCACGCGGCCGTGTACGAGTGCGGCGCCTGCCGGCGCGCTTGCGGCGACCGcgaggcgctccgccgccactgGGACGAGCACGCCGCCGAGCGCCCGCACCGCTGCGACACCTGCGGCTGGCGCTTCGTTACCTTCTCGGCGCTGCAGGTCCACGCACGCAAGTTCCACGAGGGCGGGCCCTTCAGCTGCGCCAAGTGCCCGCAGAAGTTCGACGACAGGACCGAGGTGCGCGTGCActtcggcgcggcgcacggcaggATGCGCTGCCCCAGGCCGGGCTGCGCGTTCCGCTGCGCCAGCAAGGCCTCGCtggagcgccacgccgcgctcgcccACCACCGCCAGGACGGCGAGctcgacgaggacggcgacgaggacgtggacgaccccgcgccggggccggcggccgacAAGCAGGCCCccgcggagcaggagcaggagcagcaccggtgcggggcgtgcggcgccGTGTTCCCGCTGTGGCGCGCCCTGCTGGCGCACGCCCGCAGCGCGCaccccctcgcgccgccgcccaccgtCCCGTGCCCGGACTGCGGCAAGGGGTTCCGCTCGCCGCGGGACATGGCCGAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTTCATCTGCGCCGAGTGCGGCATGACGTTCAAGCGGTCGCAGAACCTCGAGCACCACACCAAGGGGATGCACACGAACGAGCGCAACTTCGTGTGCCCCGAGTGCGGCAAGCGGTTCATCTCCAACGCCGACATGCAGCGCCACGTCCGCCACCACCACCTGGACGGCGCCAGGACGTACCTGTGCCCCGAGTGCGGCCACAAGCTCAGCTCCCTGTACAAGCTCAAGATGCACGTGCAGTCGCGGCACACGGGGGAGCGGCCGCACCAGTGCGACCTGTGCGGCGCGGGCTTCGTGGCCCGCTCGGACCTCAACAAGCACGTGGCCGGCAAGCACCGCAAGGAGCACCCGTACGCGTGCAGCGCGTGCCCCAAGCGCTACCAGCGGCGCCGTGACCTGGAGgtgcaccagcagcgccaccacgcccccgcccagcaccgctgCCCGACCTGCGGCAAGGACTTCGACTCGTACGCGTCCATGACGCAGCACGCGCGCTACCACACCACGGAGGAGCCCTTCCAGTGCGCCAAGTGCGGCCGGCGCTTCCCGCACCGCATGCACTTGGGCCGCCACCTGTGCACGCCCGGCATCAAGAAGAACCACCGCTGCGTCTCGTGCGGCCTCAGTTTCACCACCAGCGGCAGCCTCAAGTCGCACCGGGAGAGGCTGCACGCCAcggaacagcagcagccgcagggcgCGGAGCCGGCGCCGCCCGAACAGCAGGCCAAGGAGGCCGAGACCGACatgctgcaggaggaggaggaggaagaggaggaggaggccgcggcGCAGGCGTCACCGCCCGGGCAGCCCCTGTCGCAGCCGGAGCCGCAGGACGCAGTCGCTGTGCAGCATCAGCACAAGCCTGTGGGCTCTCAAGACCAACAGGACCATCATGACCTCCAGCAGGCCGTCGTGGAGCAACTGCAGCAGCACAACCCCCAAACGATCCATATGATGCAAGATGCTGTCAGATTACTGCTGTTGTACGCGCATCGGAGTCGATCACTGGGCAAGGTGGTTGGGAATGGCTCGGTGGGTGAGGGACGAGATTCCCGACTACGACGAGGTGGCGGCTCCGTTTTCGGCGGCAGAAGGTTGCAGAAAAGGCTACATCGCATActaagtaattaa
- Protein Sequence
- MILVSYIDILDYIHDDRQCLIEGEELFNENKVKNVSVCCRDIHNLLEVSALCACSNEPNSKDCQISIEINQEDTKGISSSCSCKSDRPSKCQHVVATLIHLHRHPPRQNQRDLSEKIVSTTKNDLTVVTEEPGCRSTEHNTYRELRSKRKTTITNNSKKDDFRIVNTKRRPGTEEAIEDDPTWEKENDREEDEAFDWMQSSDDEWEPIPEKKRKRDLPLLPAKGSKEKIGKKRNRMTKAEAEKKAREFTSGLQSREDGHFLCSICDRTFPKLNELQEHIRDIHFLKKEVFSCCKCDKTFRLLRMLKAHEGSCDVNSEDNEGSVTEEVQRVEAEDEAPEAALKLEPLPFLLCEVVTATRRRPGTKEAIEDDPTWEKEDDREEDEAFDWTQSSDDEWEPIPEKKRKRDLPLLPAQGSKEKIGKKRNRMTKAEAEKKAREFTSGLQSREDGHFLCSICDRTFPKLNELHEHIRDIHFLKKEVFSCCKCDKTFRLLRMLKAHEGSCDVNSEDNEGSVTEEVQRVEAEDEAPEPAVKLEPLACLLCEVVTATRREMHDHYLSAHRGQEKDNVSVCDRCGEFRLPREHICPSQLSFQCHMCRAAPFKAGRDYWNHLIRDSKRHASASTASSRWWCGWAGCGERFPSEAELLAHARLHLPAHAPLMCSVCLLLLRNTDAKVVHTERHHAAVYECGACRRACGDREALRRHWDEHAAERPHRCDTCGWRFVTFSALQVHARKFHEGGPFSCAKCPQKFDDRTEVRVHFGAAHGRMRCPRPGCAFRCASKASLERHAALAHHRQDGELDEDGDEDVDDPAPGPAADKQAPAEQEQEQHRCGACGAVFPLWRALLAHARSAHPLAPPPTVPCPDCGKGFRSPRDMAEHRRLHTGEKPFICAECGMTFKRSQNLEHHTKGMHTNERNFVCPECGKRFISNADMQRHVRHHHLDGARTYLCPECGHKLSSLYKLKMHVQSRHTGERPHQCDLCGAGFVARSDLNKHVAGKHRKEHPYACSACPKRYQRRRDLEVHQQRHHAPAQHRCPTCGKDFDSYASMTQHARYHTTEEPFQCAKCGRRFPHRMHLGRHLCTPGIKKNHRCVSCGLSFTTSGSLKSHRERLHATEQQQPQGAEPAPPEQQAKEAETDMLQEEEEEEEEEAAAQASPPGQPLSQPEPQDAVAVQHQHKPVGSQDQQDHHDLQQAVVEQLQQHNPQTIHMMQDAVRLLLLYAHRSRSLGKVVGNGSVGEGRDSRLRRGGGSVFGGRRLQKRLHRILSN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -