Ffus000672.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000014.1:1180500-1183585[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.01 0.86 11.0 0.2 1 23 452 474 452 474 0.97 2 15 0.017 1.5 10.2 0.0 1 20 480 499 480 501 0.95 3 15 0.054 4.7 8.6 0.1 1 12 511 522 511 527 0.91 4 15 3.5e-05 0.003 18.7 0.1 2 23 543 565 542 565 0.95 5 15 8.5e-05 0.0073 17.5 0.8 1 23 571 593 571 593 0.98 6 15 0.0049 0.42 11.9 0.0 1 23 599 621 599 621 0.93 7 15 7.9e-07 6.8e-05 23.9 5.2 1 23 627 649 627 649 0.98 8 15 2.6 2.3e+02 3.3 0.2 1 23 657 681 657 681 0.83 9 15 0.00021 0.018 16.2 2.7 1 23 696 718 696 718 0.97 10 15 6.5e-05 0.0056 17.8 2.9 1 23 724 746 724 746 0.97 11 15 2.6e-06 0.00022 22.2 0.8 1 23 752 774 752 774 0.97 12 15 0.0076 0.66 11.3 0.4 1 23 780 802 780 802 0.97 13 15 0.00041 0.035 15.3 4.0 1 20 808 827 808 830 0.94 14 15 4.1e-08 3.5e-06 27.9 0.3 1 23 836 858 836 858 0.98 15 15 5.1e-05 0.0044 18.2 2.0 1 23 864 886 864 886 0.97
Sequence Information
- Coding Sequence
- ATGTCgcaaatgaaaataattttaaataccACTGATGGAAAGTCAATATCTGTTGATGTACGCCCTGAAGAAACATATCGAATGCTCAGAGAGCGAATTCTTGTGGAGTCTGGCATAGAACTTGAACTATCTCAGATAGTTTATAATGGAAAGCAGGTAGAAGAAGATCAAAATGTGTACGACTCGTTCCTAGGAGCCCAGTCCCTTGATAAACAGTCAGAGCCAAACATTGTGTGTGTTGTAGAGGGCTGTCCGTCATCTAAATTGACTGATcctaaaaaagaaatttttaaatttcctCTTGAAACTGACAGATTTTCTACTTGGCTCCTTGCATGTAACAGGCACGATTTACTGGACCGTATCCCATTATTGCTGAATTTGGAGTGTGGTGTTTGTGCTGATCACTTTCCTGAATCATGCTTTCTCAGTGGCTCTATGAGAAAACGCCTTAAAAAGAATGCTGTTCCTGTGTTAGAGGAGCAGCCTAATAATTTCAGTATTCTTGCACAAGATATGATGATGTCTGATGTGAAGCTAGAAGATGCTGTTTCTCTTAATGACATTCAAGACACTGATCATCTTTTACCAGACAGTTCTGATTTAAACGATCAGCTAACTAAGAAATCTGACCAAAATCAAGGCGAAGTTGATGAAGAAGATTTGCAAGAGGATGAGTTAGAAGAGCTagaagaggatgaagatgaagacGAAGAGGCTGAGGGGGAGGAAGATGATGACATTTTAGTGGATGGTAGTTCTTGTCAAGAGCATCCAGGTTTGCTTTGTAGACTTTGTGCGCAGCCTGTTGAGACAGCTCATTATATTTTCAatgagaaagggagagaggacaAGCTTTATGACAAAATCAGTAATAGCCTTCCAATAAATATTCATTGCAATGACCCATTACCAAAGCAAATATGTGATCAATGCCTATCAACTTTAAATATTTGCTACAATTTTGGTGTGGCATGTACAAAAGCAGAAGAAACACTGCAAAAAATGATTTCAAGGTTTAGGTGCCAAAAAGAAGTGTCATCTAATGATCCAAGTTCTATTAGTAAAGAAGACACTTCTACTTATGAAAGCCTCTTGGAAGATAAATCTGGAGGAGCAAAATCAGTGTGTTATAACTGTCCTCTCTGTTGCGAGGGCAGTATGGAATCACAAGACAATGTTAATATTGATGAAATTGAAGGGAGGCAAAGTGGGGATAGTGAGGATATTGTGCACGATCTTTTGGCAGATAGTGTTCTCtgggaagaagaggaagatcCATTGGACCCAAATTTTGCtgatgaagaagatgaagagACTGAAACCATTGATGATGCAGATGATGATGAATGCTACCCCTGTTTAATATGTGGCTCTAGTTTTATAGCACTAGCCCATTTATTCCAACACAGTGAAACTCATCAGGACACAGATTACTTTCCATGTGGGCATTGTGCTCTCGCCTTTAACACGAAAGAAGCTCTAGCTGTGCATTTGGATCTAGTCATCAATTCAGCGTGTGAGGAGCAGTACAAATGTAGTGAGTGTGGAAAACTCTTTTCATCTGAGGCTCGAGCTGAATTTCATCATGAGGTTACTCATGGTGCCAATGGATTTTCTTCCCTCTCTTGTTCAGAATGTGGTCAAGTGTTTAGACAAGAAACTAACCTTTGGGATCATGTGCAGATTGGGCACAAAGGTCAAAAGCCATTTTCTTGTCCAAACTGTGAAAAAGTATATCAAGTTCGAGCACATCTCAAAGTTCATTTAAAAGTTCATGAAGTGAAGGGTTCTTTTGTTTGTGAGGTGTGTTCTGAGTCTCTTCCTAGTAGATCAGCTCTTAAGGCTCATGAAGCTGCTCATGCAAATGAGAAATTGTTTTCTTGCGAACATTGTGGGCGATGCTTCAGCCGAAAGTACCTTTTAACAGCACATGTAAGGTCTCATCTAGATAAAAAGCCTCGCGCCTATACCTGCAGAGTTTGTGGTGAGGATGGATTTGATTCTTTACCTAAGCTCTTAGTTCATCGCCGTAGTAAGCATCAAGATGTGATGCTGCCACTTGGATCTAAGAAGgataaaattcacaaatgtGAACAATGTAACAAGGCCTTTACTGGACGTGTGGCATTAAAACACCATGCCATGAGTCACGCTGGAGAGCTTCCTCATGTTTGTGAGTTTTGCAACAAGGGATTTACCCAGAAGAGATCTCTCCTCCTTCATCGGCGAATTCACACTGGTGAAAAGCCTTATGCCTGTGGAGAGTGTGGAAAGCGCTTTGTGCAAAGTGCTCATCTCTATTCACATCTTCGCCTTCACACGGGGGAAAAGCCATATCCTTGTTCTGAGTGTGGTGCTACTTTTCGATTGAAGGATGTTAGAGACTCTCATCAACGTAAACATACAGGTGAAAGACCGTTTAAATGCAAAGTTTGTGATAAGTCATTCAGAACCTCTCATTCTTACTACCAGCATACTTGGATACACACTGGCCGTAAACCTTATCCATGTAATTATTGTGGTAAAGCCTTCAGACGTTCTAATGGCTTGAAAGTTCACATACGTATTCATACTGGAGAGAAACCACACAAATGTGAAGTTTGTGGAAGAGGTTTTGCACAAAAACAAGATATGAAGAAACATTACAATCTGCATATGATGGGTCGATTGTAA
- Protein Sequence
- MSQMKIILNTTDGKSISVDVRPEETYRMLRERILVESGIELELSQIVYNGKQVEEDQNVYDSFLGAQSLDKQSEPNIVCVVEGCPSSKLTDPKKEIFKFPLETDRFSTWLLACNRHDLLDRIPLLLNLECGVCADHFPESCFLSGSMRKRLKKNAVPVLEEQPNNFSILAQDMMMSDVKLEDAVSLNDIQDTDHLLPDSSDLNDQLTKKSDQNQGEVDEEDLQEDELEELEEDEDEDEEAEGEEDDDILVDGSSCQEHPGLLCRLCAQPVETAHYIFNEKGREDKLYDKISNSLPINIHCNDPLPKQICDQCLSTLNICYNFGVACTKAEETLQKMISRFRCQKEVSSNDPSSISKEDTSTYESLLEDKSGGAKSVCYNCPLCCEGSMESQDNVNIDEIEGRQSGDSEDIVHDLLADSVLWEEEEDPLDPNFADEEDEETETIDDADDDECYPCLICGSSFIALAHLFQHSETHQDTDYFPCGHCALAFNTKEALAVHLDLVINSACEEQYKCSECGKLFSSEARAEFHHEVTHGANGFSSLSCSECGQVFRQETNLWDHVQIGHKGQKPFSCPNCEKVYQVRAHLKVHLKVHEVKGSFVCEVCSESLPSRSALKAHEAAHANEKLFSCEHCGRCFSRKYLLTAHVRSHLDKKPRAYTCRVCGEDGFDSLPKLLVHRRSKHQDVMLPLGSKKDKIHKCEQCNKAFTGRVALKHHAMSHAGELPHVCEFCNKGFTQKRSLLLHRRIHTGEKPYACGECGKRFVQSAHLYSHLRLHTGEKPYPCSECGATFRLKDVRDSHQRKHTGERPFKCKVCDKSFRTSHSYYQHTWIHTGRKPYPCNYCGKAFRRSNGLKVHIRIHTGEKPHKCEVCGRGFAQKQDMKKHYNLHMMGRL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00731615;
- 90% Identity
- iTF_00731615;
- 80% Identity
- iTF_00731615;