Ffus027904.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010001440.1:1208250-1210013[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5e-05 0.0043 18.2 0.8 2 23 27 49 26 49 0.95 2 14 0.00055 0.047 14.9 0.5 3 23 57 78 56 78 0.99 3 14 1.8e-06 0.00015 22.8 0.7 2 23 87 108 86 108 0.97 4 14 0.00026 0.022 15.9 0.2 2 23 115 136 114 136 0.96 5 14 2.3e-06 0.00019 22.4 5.9 1 23 142 164 142 164 0.99 6 14 0.00013 0.011 16.9 4.3 1 23 170 192 170 192 0.98 7 14 0.00093 0.08 14.2 0.5 1 23 200 222 200 222 0.98 8 14 1.1e-05 0.00095 20.3 0.8 1 23 284 306 284 306 0.97 9 14 0.00012 0.01 17.0 0.3 1 23 312 334 312 334 0.96 10 14 0.0018 0.15 13.3 4.2 1 23 436 458 436 458 0.98 11 14 1e-06 8.6e-05 23.5 3.5 1 23 464 486 464 486 0.97 12 14 2.5e-05 0.0021 19.2 0.8 1 23 493 515 493 515 0.99 13 14 6e-06 0.00052 21.1 1.9 1 23 521 543 521 543 0.98 14 14 0.011 0.92 10.9 1.0 1 23 562 584 562 584 0.97
Sequence Information
- Coding Sequence
- ATGTGCAAAGGAAACGAGAAATCATTCATCGAGGACTTTGAACGGGACGCCGGTGCAAACAGCAACTTCAGGCCTTTGCAATGTTCGCAATGTCCAGCCAGATTCAAGTCCTACAGTCTTCTCCGCCGACACCTTATTCGGTCCCACGAGGAAGTCCTAATGCATGGTTGCACGGATTGCCTCCAGATGTTTACCAGTCTGTTCGAGCTTCAAGAGCATCGTAGAACTGCGCATATTAATGGTTGTGGTAAGCCTGTAAAATGTCCTGAGTGTCCCAAACGATTTTCTTCGAAAAAAGGTCTGAAGAGTCACAGGCTAGTGCACAGAGAATGGGAATTAATTCCGTGCCCATTGTGTCCTAAGAAGTTTAGGGGTGTGAGATACCTAAAAGATCACTTAAATTCTCATTCTAATGAGAGGCATTTTCAGTGCCACTTGTGCCAAAAGACATTTAAATATAAGCGAACGCTTCAGGACCACATACGAACTCACTCAGGTTTGAGGAGGTATGAGTGTCACTTCTGTGGCTGTACATACCCATATCAGAGAAGCCTCAAAAGGCATCTAATTGTTCACTTCAGAGACGACGCAAAGCCTTTTAAATGTGATGTGTGCCGTAAGGCGTTTGCCGGCCTACATGACCTTGGTTTACATTTGCAGAGTCACATCAAAACCTCTGATAATATTACAGAAACTGGACAGGAGCCAACAGAAACAGATCCTGAACTGACTGATGTAAAACCAGTATTATTTAAATCAGGTCATTTTGAGAAACCTCAAAAGACAGCTCCTGAACTGACTGATGTAAAACCAGTATTATTTGTACCAGGTGATCTTCTGAAAAAATCTTTCGACTGCACGGAGTGTCCTGAGACTTTCGAAAGAAGAAGCGACTGGCTTCGACACTTCCGTACTCACAGGGGGTCTAGACCGTACAAATGCACAGAATGCGGTAAGACATTCCTTGAATCAGGTGATTTACGAAGTCACTTAATTGACCACTCTAAGGAAATGTGTGACTCTTCGAGTGACAACTCGAATGATTCTTGTTATTCGATGAGTGATGAGGTTGATGACGATAGTGCAAACGGTTTCTTCGATGATTCTTTGCGAAGTGGAAGTCCGCTAAAAACACTTGAGGAACTTAGCGACCAAATATCCATTGATTTGCCTGAGGAAGCAAATGATGAAATTGATGCCTTCTCTGACTTTACTGACAACTTTCCCGATGATCTTAGCGATGGAGGTTTCAGTGAGTTATCTGTCACTTTAAGGCACTTATACCAACGCAAAAATGCAAGGCCGCATAAGTGTCCAATGTGTCGCTTGAGATTCAGGCAAATCAATCACCTACTAACTCATTTGGACACCCATCTTCCAAATAGACCTTATAAATGTAGTGAGTGTAATCAGTCGTTCAAGCGACAAGAGCATTTGCGTAGACATGCCGTCACCCATACTCAAAGAGAAATGCCCTTCAAATGTACGCAGTGCTCAGAATCATTTATTTCGGCAAATTTCTTAGGTCGTCACATGCGCATTCACGGAGGAAGCAATCCATACGCTTGCCACCTTTGTGAATTCAGGTTTAAGAGCCCCTCTTCCTTAGAGAAACACCTTAAAGTCCACGACCcaagtaaaaaatattttaagaccCCGGGAGAGGGCCCAAGAAGGAGACTATTCAAGTGTACAGTATGTCTGCTTAAATTCCAGAAGAGAAAAGCACTAATGCAACATCTTCTAGGTCACCTGGACCGCTGA
- Protein Sequence
- MCKGNEKSFIEDFERDAGANSNFRPLQCSQCPARFKSYSLLRRHLIRSHEEVLMHGCTDCLQMFTSLFELQEHRRTAHINGCGKPVKCPECPKRFSSKKGLKSHRLVHREWELIPCPLCPKKFRGVRYLKDHLNSHSNERHFQCHLCQKTFKYKRTLQDHIRTHSGLRRYECHFCGCTYPYQRSLKRHLIVHFRDDAKPFKCDVCRKAFAGLHDLGLHLQSHIKTSDNITETGQEPTETDPELTDVKPVLFKSGHFEKPQKTAPELTDVKPVLFVPGDLLKKSFDCTECPETFERRSDWLRHFRTHRGSRPYKCTECGKTFLESGDLRSHLIDHSKEMCDSSSDNSNDSCYSMSDEVDDDSANGFFDDSLRSGSPLKTLEELSDQISIDLPEEANDEIDAFSDFTDNFPDDLSDGGFSELSVTLRHLYQRKNARPHKCPMCRLRFRQINHLLTHLDTHLPNRPYKCSECNQSFKRQEHLRRHAVTHTQREMPFKCTQCSESFISANFLGRHMRIHGGSNPYACHLCEFRFKSPSSLEKHLKVHDPSKKYFKTPGEGPRRRLFKCTVCLLKFQKRKALMQHLLGHLDR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -