Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010000440.1:294934-297150[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0004 0.035 15.3 4.5 1 23 133 155 133 155 0.96

2 16 0.0017 0.15 13.4 1.3 1 23 161 183 161 183 0.97

3 16 3.9e-05 0.0034 18.5 0.2 1 23 189 211 189 211 0.92

4 16 5.5e-05 0.0047 18.1 1.1 2 23 214 235 213 235 0.97

5 16 6.3e-05 0.0054 17.9 0.1 1 23 242 265 242 265 0.94

6 16 0.00012 0.01 17.0 0.4 1 23 280 302 280 302 0.96

7 16 0.047 4 8.9 0.3 1 23 307 329 307 330 0.94

8 16 0.00021 0.018 16.2 0.7 2 23 335 356 334 356 0.97

9 16 2.9e-05 0.0025 19.0 2.7 2 23 364 385 363 385 0.97

10 16 0.00049 0.042 15.1 0.2 1 23 389 411 389 411 0.98

11 16 2.3e-06 0.0002 22.4 1.9 1 23 416 438 416 438 0.98

12 16 1.3e-06 0.00012 23.1 0.3 1 23 444 467 444 467 0.97

13 16 0.00018 0.015 16.5 0.5 3 23 475 495 473 496 0.94

14 16 0.00037 0.032 15.5 0.1 3 23 505 525 503 525 0.98

15 16 7.1e-06 0.00061 20.9 0.2 1 23 531 553 531 553 0.98

16 16 1.3e-06 0.00011 23.2 4.8 1 23 559 581 559 581 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0004	0.035	15.3	4.5	1	23	133	155	133	155	0.96
2	16	0.0017	0.15	13.4	1.3	1	23	161	183	161	183	0.97
3	16	3.9e-05	0.0034	18.5	0.2	1	23	189	211	189	211	0.92
4	16	5.5e-05	0.0047	18.1	1.1	2	23	214	235	213	235	0.97
5	16	6.3e-05	0.0054	17.9	0.1	1	23	242	265	242	265	0.94
6	16	0.00012	0.01	17.0	0.4	1	23	280	302	280	302	0.96
7	16	0.047	4	8.9	0.3	1	23	307	329	307	330	0.94
8	16	0.00021	0.018	16.2	0.7	2	23	335	356	334	356	0.97
9	16	2.9e-05	0.0025	19.0	2.7	2	23	364	385	363	385	0.97
10	16	0.00049	0.042	15.1	0.2	1	23	389	411	389	411	0.98
11	16	2.3e-06	0.0002	22.4	1.9	1	23	416	438	416	438	0.98
12	16	1.3e-06	0.00012	23.1	0.3	1	23	444	467	444	467	0.97
13	16	0.00018	0.015	16.5	0.5	3	23	475	495	473	496	0.94
14	16	0.00037	0.032	15.5	0.1	3	23	505	525	503	525	0.98
15	16	7.1e-06	0.00061	20.9	0.2	1	23	531	553	531	553	0.98
16	16	1.3e-06	0.00011	23.2	4.8	1	23	559	581	559	581	0.99

Sequence Information

Coding Sequence: ATGTGCCTGTGTTTCTCGCCCTGCATGCAGACGGACGTCAAGGTGGTCGCCGAGCTGCCGGTCGGCCACACTGTCCACGTCAAGCCGAAGGATGAAGAAggtgccgccgggcccgtcATCACCTCGGTGGGCTTCGTCAAGGACGAGGTGGACGAGGTGCAGCACGACGTGGCCATCAAGACCGAGCCCAAGGACGAGGTGATGGACAACGGTctcccgccgccacgccctgagGAGAACGACGACCAGGTGCACGACGACGTGTTCGGCGAGCAGATGGACCTCAGCAACGACGAGGGCAACGATGGCGAGGAGCAGGTATGGGACTGGCTCTCTCATGGTTGGGACCTTCGATCAAACGAGGAAGGGGAAAAAGTTCGTCGCTCCAAGCGCAAGTTCTTCTgcaagcagtgccccgcccaCTTCAAGCGCCCCAATCATTTGAAGAAGCACGAGCTGGTGCACAAGGCCAACAAGCCCTTCGCCTGCCCTCACTGCACGGCCAGCTTCCCGTCCGAGACCCGTCTCAGCCACCACCTGCTCGTGCACTCGACCGCCAGCGTCTTCCGCTGCGACAAGTGCGGCGAGACCTTCGCGACGGCCACCATGCTCAAGGAGCACTTGCCGACGCACACCTGGAAGTGCCCCTACTGCACGTCCGTGTTCAACACGCTGCACGGCCTCAAGATCCACGTGCGCACCCACAACAAGACCATCGACACGTTCATGTGCTCCGAGTGCCCCGCGAGCTTCCCCAGCAAGGAGGAGCTCCGCGCTCACAAGAAGGCGACCcaccccgtcgcgccgccgccgcctccgcccccggccctcgaCTCCTACGAGTGCGAGTACTGTGACGAGAAGTTCACGTCTACCTTCGACCTCCTAGTGCACGCCAAGGACCACCAGGACAAGGACTTCCCCTGCGATGAGTGCCCCGCCCAGTTCGACACGCGCAAGGAGCGCGCCTTGCACGTGCAGCTCCACCACCCGCGCGAGGTGAAGTGCGAGAAGTGTGACCTGACCTTCGCGTCGCACTCCGAGATGGTCACCCATCTGGCCACGCACGACATCGACGACGAGCACCTGCGCTGCGAGTTCTGCCCCAAGGTGTTCGCCACCAACTACCACCTGCTGGAGCACCTGCACACGCACGCCGAGCGCTTCGAGTGCAACTCGTGCCAGGCCGAGTTCGTGACTCGCGCGCAGCTCGAGCTGCACGCCAAGACGCACACCGAGGGCGCATTCCGCTGCGAGGACTGCGGCCAGCGCTTCGTGGCCAAGCAGCACCTGACGCAGCACATGAAGGTGCACGACGGCCAGAAGCCGTTCCCCTGCGACGAGTGCCCCATCCGCTTCAAGACCGAGAGCCAGCTGGTCAAGCACCAGCGCATCACGCACAAGCGCGCCGCCAACATCAACTGCTCCGACTGCGGCGCGCCCTTCATGAACACGTTCCAGCTGCAGGAGCACCTGCGCGTGCACCACGCCAAGAAGACCAAGGCCTACTGGTGCGAGGAGTGCGTCGAGTCGTTCCCCACGAAGGCGCTGCTGGAGCAGCACGTGCGCAACCACGTGGACAAGAATCTGTTCCAGTGCCCCGACTGCCCGCTCAAGTTCGCCACGGCCACCGGCCTGGAGCACCACGCGCGCTCGCACAACCTGGACAACCCCTACACTTGCGGCTACTGTGAGCACACCTTTATCAGCAAGGACCACCTGATCCGCCACATGAAGACCCACAAGAAGAAGTAG
Protein Sequence: MCLCFSPCMQTDVKVVAELPVGHTVHVKPKDEEGAAGPVITSVGFVKDEVDEVQHDVAIKTEPKDEVMDNGLPPPRPEENDDQVHDDVFGEQMDLSNDEGNDGEEQVWDWLSHGWDLRSNEEGEKVRRSKRKFFCKQCPAHFKRPNHLKKHELVHKANKPFACPHCTASFPSETRLSHHLLVHSTASVFRCDKCGETFATATMLKEHLPTHTWKCPYCTSVFNTLHGLKIHVRTHNKTIDTFMCSECPASFPSKEELRAHKKATHPVAPPPPPPPALDSYECEYCDEKFTSTFDLLVHAKDHQDKDFPCDECPAQFDTRKERALHVQLHHPREVKCEKCDLTFASHSEMVTHLATHDIDDEHLRCEFCPKVFATNYHLLEHLHTHAERFECNSCQAEFVTRAQLELHAKTHTEGAFRCEDCGQRFVAKQHLTQHMKVHDGQKPFPCDECPIRFKTESQLVKHQRITHKRAANINCSDCGAPFMNTFQLQEHLRVHHAKKTKAYWCEECVESFPTKALLEQHVRNHVDKNLFQCPDCPLKFATATGLEHHARSHNLDNPYTCGYCEHTFISKDHLIRHMKTHKKK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732681;
90% Identity: iTF_00732681;
80% Identity: -