Ffus002412.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella fusca
Gene Symbol
-
Assembly
GCA_029379305.1
Location
JAHWGI010000100.1:910818-919956[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.8e-05 0.0015 19.6 1.1 1 23 353 375 353 375 0.96
2 16 0.0097 0.84 11.0 3.2 1 20 381 400 381 403 0.93
3 16 1.2e-05 0.001 20.1 1.1 1 23 409 431 409 431 0.99
4 16 1.6e-05 0.0014 19.8 2.6 1 21 437 457 437 459 0.94
5 16 2.3e-05 0.0019 19.3 4.4 1 23 465 487 465 487 0.99
6 16 2.8e-05 0.0024 19.0 5.3 1 23 493 515 493 515 0.97
7 16 1.5e-05 0.0013 19.9 8.1 1 23 521 543 521 543 0.97
8 16 1.3e-06 0.00011 23.2 2.8 1 23 549 571 549 571 0.98
9 16 3.9e-06 0.00033 21.7 5.0 1 23 577 599 577 599 0.98
10 16 0.00044 0.038 15.2 8.4 1 23 605 627 605 627 0.96
11 16 0.00045 0.039 15.2 4.3 1 23 633 655 633 655 0.98
12 16 3e-06 0.00026 22.1 4.6 1 23 661 683 661 683 0.98
13 16 4e-06 0.00034 21.7 5.0 1 23 689 711 689 711 0.98
14 16 7.3e-05 0.0063 17.7 5.5 1 23 717 739 717 739 0.97
15 16 8.8e-06 0.00075 20.6 5.6 1 23 745 767 745 767 0.97
16 16 6.4e-07 5.5e-05 24.2 2.9 1 23 773 795 773 795 0.98

Sequence Information

Coding Sequence
ATGGGTCCCATTGCTAAGTACTGGGTGCTTTCAAACCTCTTTCCCGGACAAATTCCACAGTTACCTGGTGTCCCTGCGATTTCGACAGCTTCTGGGGGAGTACCGGCACTAAGCCAACCACAACAGTTAGGCTTTGGTGCGACGACACTACCTCAGCAGCAGTCCCAGTCGCATCAAGGTCCCACTCAAGCGACGATATCCGTTCCCTTCGACGCAAGCAAGGACAAACGAGGATCTGGAGCAAGAGGGTTGCCAAGCCACCCAGCGCATCAACTTTTGGTGCGCAACGCTATGCCTACTACTGGAACTACAAGCATGCATCCAGTTCAACAAGCTGTAGCTCAGCAGCAAGCCGCTCAACAAGCTGCTGCTCAAGCTGTTCAGGCTGCTCAAGTAGCTCAGTCTTCTTCTAGAGTTGGTACACAAATGGATCAACCTCCGCATTCCGTGCACCCAGCTGCACACCCTGCAGCTCATGTCACAGTACATGCTGCTCATGCCGCTCATGGATCTGGGCATCCCGCTGCCCATCCTGTTGCCGTGGTTCATGTTGCAGCTGGTGCTCAGGCTGCAGATCTTAAACATGAAGCCAGTAAGGCTGGTGCTAGTGGTCATAAAGACCAAAGATTAATTATGTCGGGCTTCCCTATGCAAGAAATTAAAGGACACATGATGGACCTCCGAACTGTAGATGGAAGCATCCTTAAAATTACCACTCCCAATGGAGAGCAGGAACTTGCCAAATCATTGGGTGTTGAAATGGTTCAGAATATGTACAAAGTCAATGTTGAAGATATAAATCAGTTGTTAGCCTATCATGAAGTCTTTGGCAAACTTCAAAATGAAATGGTAACAGCGGGGCAACCATCCAATTCCACCACTGTTACTACAACTACCTCACAACCACAACCACCATCAGCAGCTGCCATTGCAGCTGCAGCAAGGCACTCTGAGCCAGCTGTACTTCAAAATGGTGTTATGGTCAAAACATTAAATGAAGCTGGAGAGGGTGTGTCTGGTACGACCTCTCCCTCGGCGCTGGCTTCTGCTGTCACACATGCTTGTGATGTGTGTGGCAAAATGTTTCCCTTTCGGTATCAACTTATTGTCCATCGCCGTTACCATACAGAACGTAAACCATTCACATGTCAGGTTTGTGGCAAAGCATTTTCCTGTGCTGCAGAATTAACGAGGCATGGGAAATGTCACTTAGGAGGCAGCATGTACACCTGCTCAGTGTGTTTCCATGTATTTGCTAATGCACCCTCATTAGAACGGCACATGAAGAGACATTCAACAGAGAAACCTTATGCATGCCCTGTTTGTGGCAAGTCATTTGCTCGAAAGGAGCATCTAGACAATCACACTAGATGTCATACTGGAGAGACACCATATCGCTGTCAATACTGCGCTAAATCGTTTACTAGAAAAGAACATATGGTTAACCATGTGCGGAAGCACACAGGAGAAACTCCTCACCGCTGTGATATTTGCAAGAAGTCTTTCACCAGGAAGGAACACTTCATGAACCATGTCATGTGGCACACGGGTGAAACTCCTCATTCATGTCAGGTCTGTGACAAGAAGTTCACTCGGAAGGAGCATCTCGTGAACCACATGTGCACACACACCAATGAGACCCCTTTTCGCTGTGAAACCTGCGGCAAGACTTTTGTAAGAAAAGAACACTTCACAAGCCACATCATGTGGCACACTGGTGAGACGCCGCATCAATGTGATCTCTGTGGGAAAAAATTCACCCGTAAGGAACATCTTTTGAACCACGTCCGGCAGCACACAGGTGAAACACCGCACCATTGCGAATACTGCCCCAAGAAATTTGCTCGTAAGGAGCATCTTATAATCCATACCAGACATCACACAGGTGAAATGCCGTACCACTGTGAATACTGTcccaagaaatttgctcgaaagGAGCATCAAATTATCCACACGCGTCTTCACACAGGTGAAATGCCGCACCAGTGTGAATACTGTCCCAAGAAATTCTCTCGTAAGGAACACCTTATAATTCACACCCGTCTGCACACAGGTGAGATGCCTCATCAGTGCGAATATTGCCCCAAGAAATTTTCTCGTAAGGAACATCTCATTATCCACACGCGTCAACACACAGGTGAAACCCCCCATCGGTGTGAATTCTGCTCAAAAGCCTTCACACGTAAAGAACACCTGTTGAACCACGTTCGTCAGCACACTGGCGAGTCACCACATCGCTGTGGATATTGCTCCAAATCTTTCACTCGGAAAGAACACCTGATCAACCATGTGCGTCAACACACAGGTGAAACTCCATTCCGGTGCCAGTACTGCCCCAAGGCCTTCACACGGAAGGATCATCTGGTCAACCACGTCCGCCAGCATACGGGAGAGACGCCGCACAAGTGCCAGTAA
Protein Sequence
MGPIAKYWVLSNLFPGQIPQLPGVPAISTASGGVPALSQPQQLGFGATTLPQQQSQSHQGPTQATISVPFDASKDKRGSGARGLPSHPAHQLLVRNAMPTTGTTSMHPVQQAVAQQQAAQQAAAQAVQAAQVAQSSSRVGTQMDQPPHSVHPAAHPAAHVTVHAAHAAHGSGHPAAHPVAVVHVAAGAQAADLKHEASKAGASGHKDQRLIMSGFPMQEIKGHMMDLRTVDGSILKITTPNGEQELAKSLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQNEMVTAGQPSNSTTVTTTTSQPQPPSAAAIAAAARHSEPAVLQNGVMVKTLNEAGEGVSGTTSPSALASAVTHACDVCGKMFPFRYQLIVHRRYHTERKPFTCQVCGKAFSCAAELTRHGKCHLGGSMYTCSVCFHVFANAPSLERHMKRHSTEKPYACPVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKSFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHSCQVCDKKFTRKEHLVNHMCTHTNETPFRCETCGKTFVRKEHFTSHIMWHTGETPHQCDLCGKKFTRKEHLLNHVRQHTGETPHHCEYCPKKFARKEHLIIHTRHHTGEMPYHCEYCPKKFARKEHQIIHTRLHTGEMPHQCEYCPKKFSRKEHLIIHTRLHTGEMPHQCEYCPKKFSRKEHLIIHTRQHTGETPHRCEFCSKAFTRKEHLLNHVRQHTGESPHRCGYCSKSFTRKEHLINHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGETPHKCQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-