Ffus025251.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- Znf131
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010001411.1:6184681-6188362[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00034 0.03 15.6 1.7 1 23 240 262 240 262 0.98 2 22 0.0021 0.18 13.1 0.2 1 19 268 286 268 288 0.96 3 22 0.013 1.1 10.6 0.4 2 23 300 321 299 321 0.95 4 22 0.00095 0.082 14.2 4.1 1 23 327 349 327 349 0.98 5 22 5.4e-07 4.7e-05 24.4 1.9 1 23 368 390 368 390 0.98 6 22 0.00024 0.021 16.0 3.5 1 20 396 415 396 416 0.96 7 22 0.0048 0.41 12.0 3.1 2 23 439 460 438 460 0.97 8 22 5.3e-05 0.0046 18.1 0.7 1 20 466 485 466 487 0.95 9 22 0.014 1.2 10.5 0.9 1 23 496 518 496 518 0.95 10 22 0.00098 0.084 14.1 1.7 1 23 524 546 524 546 0.97 11 22 0.00045 0.039 15.2 1.8 1 23 552 574 552 574 0.96 12 22 0.0032 0.27 12.5 0.0 1 23 580 602 580 602 0.97 13 22 0.015 1.3 10.4 0.0 1 23 608 630 608 630 0.96 14 22 0.037 3.2 9.2 3.8 1 23 636 658 636 658 0.97 15 22 3.2e-06 0.00027 22.0 2.7 3 23 666 686 664 686 0.97 16 22 0.0017 0.15 13.4 4.0 1 21 692 712 692 714 0.91 17 22 0.0031 0.27 12.6 0.1 1 23 720 742 720 742 0.98 18 22 7.1e-08 6.1e-06 27.2 0.4 1 23 748 770 748 770 0.98 19 22 6.7e-06 0.00058 20.9 0.3 1 23 776 798 776 798 0.98 20 22 5.5e-05 0.0047 18.1 0.2 1 23 804 826 804 826 0.98 21 22 0.00046 0.04 15.2 2.3 1 23 832 855 832 855 0.92 22 22 0.00012 0.01 17.1 1.9 1 23 861 884 861 884 0.97
Sequence Information
- Coding Sequence
- ATGGCTCTTGTGTCATATGTTGATATTTTGGAAGTTGTTGGAGAACTGAAAGATTTCAAAGTCAAACTTGTGGAAGGAGAAGGAATCGCTAATCGAGGTggcataaaaaaaatcaatgttttGGAGAGGGATGTTGGTGTCAGTGATATAACAGCTTTGTGTGAATCTAACTCAGAGGATCAGCCACCTTACTCTATTTTGATATCTGTAGTAGAGGAACCTCGTCTCTTGCGCTGTGAATGCTCATGTCTTGATGGACAATCGGGGAAGTGTCAACATGTAGTCGCAACAATGATCCACATTCATAGGAACAATATTACTCTTGAGGGGCTAAAGGGTTACGAGgaagtgagagaaagagagcctCAAATGGTTACTTTCTCCTGTAACACTAACATTTTTCCTTTAGGAgaggagttttcttcaaatAATTCTTCATCATCTCTTGTTTGCATAAATGATGAGAACATTTCAAGAGTCCCTGCAAATCTTGAGGTACTGTCAGGTACTGTAGGGCAAATGACATCAGAAATGGAAGAGCATGTCACTCAAGAAACAGATATGAATGCTGATCTCCTTAAAGAAATTGTTACAATGGATGAAAATATGGTTTCTTCTAATACACCAGTAAACATAGACAACACTACTTCTCAAAGCATGGGGCGAGGTCACAGAAGATCAGTTCCTAATCCAAAATACACATCTGaaacaaatagGTTTACATGCTCAGTTTGCTCCAAAGGATTTGGAAAGAAAGCACACTATGCAGAGCATTTGAGAAGTCATACTGGTGAGAAACCATTCGTTTGTGATTTGTGTGGTCAAGGATATTCCCAAAAAAGAACTCTTCTGAAACACAAAGGCCAAGAGGGTGGATGTAAAGCAGCTGTGAAACTTAGATGTCACCTTTGTGATTTAATTCTTACAAATCAATCTGATCTGGACTCTCATGTGGTAAGTCATACCAGTGACAAAGACTTCAAATGTTCAAACTGTCCCAAACATTTCACAGACTTAACCAAGTTTGAAGAGCATAAGCTAACCCATTCTCCTGCAACATCAGATTTGACCAAACAGTCCCAAAATACAGTACATGAAGAGTTCATCTGTGATGTTTGTGGGAAGAGCTTTAAGAGATTAGCTCACCTTACAACTCATAAACGTGTTCACACTGATGACAAACATTTTAAGTGCACTCAGTGCCCGAAACGTTTCAGCCGTCTTAGTTCATTTAAAGCCCATAAGCATGATAAGCCAGACAGTTCTTCCAAATCAACCTCTACAGCACCTGTTCCACGAAAAAGAACTGTTATTAAATGTGAAACATGTGGCAAAGAATTTACGAACCGTGTTCACCATGAAGAACATGTTAGAAGTCACACTGGAGAGAGACCATTTCAATGTGTGGAATGTGGAAAAGGTTTTGCAACAAAGCGTTCTCTAAGAAATCATACCCATCTAGGAAGGAATGCCAGAGAGCGGAATCACATGTGCTCTCAGTGTCCTGCAACCTTCACAACAGGTTTCATGTTAAAAGTTCATGAAAAAGGACACTCCGGTGAGAAGCCATATGCCTGTGGAGAGTGTGGAAAATTTTATCGTTCTCAGCATGTATTTCAAGATCACCTTAACCAGCACAAAGGCATTAAAGCACACAACTGTAAGGAATGTGGAAAGTCCTTTACATGGAGGACATCATTATGGGCTCATACCAAAGAGCATTCTAAAGAAAAACCATTTGAGTGTGTGCAGTGTGGTGCTAGGTTTGCTGAGCAGGTAGAATTGAAAGATCATTGGGAAGTTCATTTTGATGACAAGCCATTCCAGTGCCCGGAATGTGGAATAGGATTTATGCTAGAGACTGATCGTGAAAAGCACCTTGAAATTCACAAGATGTCACCTTCCCACAGTTGCACCAAATGTGATAAGAAGTTTTTATGGGCTGATGAACTACATCGACATATGCTAActcacaaagaaaagaaaagatgcCTTTGTCCCACATGTGGACAGACATTTTCCAGCAAAGGACATTTAAAAGTACACATGCTCATACATACTGGAGAAAAGCCTTTTGAATGTGAAACTTGTCATAAACGCTTCTATACCCGCAGCCTGATGAAAAAACATGCTGTTTTTCATTCAAATGAACGCCCGTTTGAATGTGCTCTTTGTGGGGATAAATTCCCAACTCAAGGAATTTTAAGAGCACATATAAGAACCCATACTGGTGAGAGACCATATGCTTGTGGAGAATGTGGAAAATCATTTCCTCAAAACACTTACCTTAAGCGTCACATGTTGACTCACACAGGTGAGAGACCATTTCCTTGTACTGTTTGTGACAATGCATTTGTCTCTCGCTATGACCTTAAGATTCACCTACGCACCCACACTGGTGAGAGGCCTTTTGCTTGTGATGAATGTGAAGAGCAATTTTATGAGCGAGCACAACTCACTGCCCATCAACGGACTCATTCTGGAGAGAGAGCATACTCATGTGATCTTTGTGGAAAAGGGTTCAACAATAGCAATCATGTGAAGAAACACTTTGTGCGTCTTCACCCAGATGTGGCACCATTTCGATGTTCGGATTGTGGAGAAAGATTTGCTATGTGTGAAGCTCTCCGAAAACACAAAAAGTCCATACATCTTCTAGGGACTGACGTAAGACAAACTTCAGCAGAAGAAGAATCAGCTTTAGATCTAATTtcaaaagacaaaaagaaaGATCCCTTAAACCGCTTAATTGAAGATAGTCAAATTTTAGTTGATGAGTCATCAGATACTTCCTGTGATGTACATGAAGCAGATTCTGCAGTTCTTCCAGAAGAATATGAAATTGTTCAAGTAAATCTGGTGGATTCATCTGAGCTGGCAAAACTTCCAGAGGGTTTCAGATGTGAGACGGTTGAGGTGTATCATGCAGAATCCTTAGCTGGCTTGGAAGGAAGTGGAGAGTTCCAGGCAGTTAGCATTACCTCCATTCCAAGTAATATGGTTGCGACTCCCGTAAACTTATCATGTCGCATTGCAGTGAAGAGAAAGAAGTAA
- Protein Sequence
- MALVSYVDILEVVGELKDFKVKLVEGEGIANRGGIKKINVLERDVGVSDITALCESNSEDQPPYSILISVVEEPRLLRCECSCLDGQSGKCQHVVATMIHIHRNNITLEGLKGYEEVREREPQMVTFSCNTNIFPLGEEFSSNNSSSSLVCINDENISRVPANLEVLSGTVGQMTSEMEEHVTQETDMNADLLKEIVTMDENMVSSNTPVNIDNTTSQSMGRGHRRSVPNPKYTSETNRFTCSVCSKGFGKKAHYAEHLRSHTGEKPFVCDLCGQGYSQKRTLLKHKGQEGGCKAAVKLRCHLCDLILTNQSDLDSHVVSHTSDKDFKCSNCPKHFTDLTKFEEHKLTHSPATSDLTKQSQNTVHEEFICDVCGKSFKRLAHLTTHKRVHTDDKHFKCTQCPKRFSRLSSFKAHKHDKPDSSSKSTSTAPVPRKRTVIKCETCGKEFTNRVHHEEHVRSHTGERPFQCVECGKGFATKRSLRNHTHLGRNARERNHMCSQCPATFTTGFMLKVHEKGHSGEKPYACGECGKFYRSQHVFQDHLNQHKGIKAHNCKECGKSFTWRTSLWAHTKEHSKEKPFECVQCGARFAEQVELKDHWEVHFDDKPFQCPECGIGFMLETDREKHLEIHKMSPSHSCTKCDKKFLWADELHRHMLTHKEKKRCLCPTCGQTFSSKGHLKVHMLIHTGEKPFECETCHKRFYTRSLMKKHAVFHSNERPFECALCGDKFPTQGILRAHIRTHTGERPYACGECGKSFPQNTYLKRHMLTHTGERPFPCTVCDNAFVSRYDLKIHLRTHTGERPFACDECEEQFYERAQLTAHQRTHSGERAYSCDLCGKGFNNSNHVKKHFVRLHPDVAPFRCSDCGERFAMCEALRKHKKSIHLLGTDVRQTSAEEESALDLISKDKKKDPLNRLIEDSQILVDESSDTSCDVHEADSAVLPEEYEIVQVNLVDSSELAKLPEGFRCETVEVYHAESLAGLEGSGEFQAVSITSIPSNMVATPVNLSCRIAVKRKK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733345;
- 90% Identity
- -
- 80% Identity
- -