Ffus014341.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000994.1:468862-479265[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.075 6.4 8.2 0.3 1 21 79 99 79 100 0.94 2 20 0.0028 0.24 12.7 0.0 1 21 154 174 154 175 0.95 3 20 9e-06 0.00077 20.5 0.7 2 23 489 510 488 510 0.97 4 20 0.00058 0.05 14.8 0.5 1 23 516 538 516 538 0.96 5 20 3.5e-05 0.003 18.7 6.6 1 23 541 563 541 563 0.97 6 20 1e-05 0.0009 20.3 0.2 1 23 569 591 569 591 0.98 7 20 1.4e-05 0.0012 19.9 0.4 1 23 597 619 597 619 0.96 8 20 2.3e-05 0.002 19.3 0.6 1 23 625 647 625 647 0.98 9 20 2.5e-08 2.2e-06 28.6 4.3 1 23 653 675 653 675 0.98 10 20 5.4e-06 0.00046 21.3 0.3 1 23 681 703 681 703 0.98 11 20 9.8e-06 0.00084 20.4 1.7 1 23 709 731 709 731 0.97 12 20 0.028 2.4 9.5 4.1 1 23 733 755 733 755 0.95 13 20 0.033 2.8 9.3 0.6 1 23 790 812 790 812 0.97 14 20 4.8e-05 0.0041 18.3 3.3 1 23 818 840 818 840 0.97 15 20 1.5e-05 0.0013 19.9 0.6 1 23 846 868 846 868 0.98 16 20 1.6e-07 1.4e-05 26.0 0.9 1 23 874 896 874 896 0.97 17 20 3.2e-05 0.0028 18.8 1.4 1 23 902 924 902 924 0.98 18 20 1.4e-07 1.2e-05 26.3 1.3 1 23 930 952 930 952 0.99 19 20 5.5e-05 0.0047 18.1 0.9 3 23 960 980 958 980 0.97 20 20 0.28 24 6.4 2.1 1 19 986 1004 986 1004 0.74
Sequence Information
- Coding Sequence
- ATGGCAAATCCAAGCTCAATCAACCCAGTGCTTGTATCCGACAATGTTCCTTGGGAGCCATTCGGAAAGACAACCAGACTTGAAGCACAACCAACCGAGCCATCATCCCCCACCAGCTCCAACAGACCCAAGAAACTTACTATGATGCTTGATATGGCTTGGTTAGAACAAGAAATCAAAGATCTAGAGGACGTCAAAGTGGAGAGTAATCAAGGTTCATCTGCAGCTGACATGTTTCCTTGTTCTAATTGTGTAGTAGCCTTTACTAGCCAAGTATACTTGGATAAGCATAAGAAGTACTGTCGTGGACCTAAAGCAGAGGCTCAATGTGCCACCATGATTGTGACAACAGCAGATTCTCCTACTGTTACAGTGTTGACAAATGTCAATCCAATAATTTCTCAAAACCTCCCCACTGAGCCTGATAGGAGACACCCAGGAGATGTCTCACAACAAGGCTATCCATGTCCATGGTGTCCTACTGTTAGCACTTCACCAGCATATTTGGAGAAGCATAAGAAACGATGTCAGAGAAAGCAGCATTCTCTCCAACAAACACACCACCCTGTGCCTGCTTTGCAGCAAACCCTCCACACTCAAGTTTACAACGGGCCCATCCAGCAAGCCAAGATAGAGGCGGAGGGACAGCCAACTCATCATGTGCTGCTGCAGCCTCAACTTCAACACCTCGGAGAGCATCACTTGTCTCAGTTTCATTTCATGGACACGCTGTCCCAGTCTGTACAGGCCCAAGTGCAAGCTCAGGCTCAAGCTCACGTGCAGGCCCAGGCTCAAGCGCAGGCTCAAGCACAGGCTCAAGCGCAGGCTCAAGTCCAGGCTCAAGTCCAGGCCCAAGTCCAGGCCCAAGTCCAGGCCCAGACTCAAGCTCAGGCTGAAGCTCAAGTACATGCTCAGGGTCAGACCCAAGCTCAAGGCCAGGCccaagttcaagttcaagtccAACATCAAACAATCCCTCAACAACACTCTGCCCTGAAAGAAGAACATCCAACCCTGAAAGAGGAACACCCAACAACTACCCTACTGCCCTTGCACTTGCCGCTGACTGCTCAAGAGCACGGCCAGACTCTGGTAGTGACCAGCGCACCTTCAAGTATGTCACAGGCATTAGAGCAAGCTTTAGTAGTTTCAGCATCTACCACTCCTACTAACATATCTCAAGCCTTTGTGCAGACTGCTTCTGCAAGCACTCCAACTAGCAGCTCTCAGTCAATGACAATTATGGTTCCTTTATCCCTAGGCATTCCTGCCATGCAACTTCCACTCCCTGTGTCCATGCCATCTCTTGTGCCTCTCACGTTACATCAAGAGGGTGTGAACGGAATAGAAAATTCGGTAACTGTGTCTGGTACCAGTGGGAACAGTCTATCTTATTTAGAAAACAGTGTGCCATCAAACAGTGCAAAGCCCATAGAGTACCGCCCCGGAGAGTTGCCTCCAATGAGTTGCAAGGAATGCGGCGAGCAATTTTCAAATAATTTGCAGCTTCGTAAACATATTCTGACTCACAGCAAAGATAAACCATTTGTATGCACAACATGTtggaaaatattcaaaaatggtGAGGATTTAGAAAAACACCGTACCCTGCATAGGCCTCATTCATGTACTCATTGTGGGGAAAGATTTAGGCGGTTGGGTCATCTGAAAAGACATGCAATGACTCACACTGGACACAAACCATACCCATGTCCGTCTTGTAATAGAGAGTTCATGGACAATGTTGACCTGAAGAGACATATTATGACGCACTCAGGAGAAAAACCCTACAGATGTCAAGTGTGTGGTGATTCTTTTGCTCGAAGCAGCAACTTGAGAAGGCACAGTATTATACATACTGGTGATAAACCGCACAAGTGCCCAGAATGTGGTGACGGATTTGTTGATTCATTTGATCTCAAACGTCATCTCAtgacccacactggagagaggCCATATCATTGTGACTACTGTGGAGAGAGTTTCACAAGAAGCAGCAACCTTCAACGTCACCAGCGTAAGCATACTGGGGTTCGACCCTTTTCTTGTGACCTCTGTGAGAAAACATTTGCAGATAAAATTGACTTGAAGCGTCATGCTAGAGTGCATTCAGGCGAAAAGCCATTTGCCTGCACCAAGTGTGGTGAGCATTTTGCTCGCCAATCTAACTTAATAGTACATTTCAAAAGTCACACTTTCAAATGTACGTTTTGCAATGAACGCTTTGATTCACAGTCATGTTTGGATGAACATGAACAGTTTCATAATGTACCCAACTTTTTGACGTGTTTGCATTGCCAGCAAGATGTTTTAGAAAGTGACATGAACAACCATTTGTTAAGCCATACTGAACCAGGACGTGATCTGTTCTCATGCAATTTGTGTGATCAAAAGTTTCTGGAAGAAGATGACCTGAAAGTACATAACAGGTCCCATTTAGTCCAAAAGCCTCATACTTGTGAAAGTTGTGGCGAGCGCTTTGCACGCAGGAGTCACCTCTCTCGTCATGCTTTGACTCACTTGGATAGAAAACCTTTCCCTTGCAGTGAATGCAGTAAATCTTTCTTAGACAATGTTGATTTAAAGAGACATATGATGACTCATACTGGAGAGAGACCCTTTATTTGTACTGAATGTGGTGAAACATTTTCTCGTTCCAGCAACCTTAAGCAGCATAGCCGAATACATACTGGGGAGAGACCCTACCAATGCAATACTTGTAATAAGCAATTTAGTGATAGTGGTGTTTTAAGGCGCCATTCTCTCACCCACTCTGGTGTCCGTCCTTACGTTTGTCCAGAATGTGGAGAGAGGTTCAGCCAAAAGAGCCATCTAATCTCTCACAACAGAACTCACTCTGGTGAGAAGCCTTATGGATGTTCTCAATGTGAAGAAAAGTTCACTGAGAGAAGCAATTTACGAAGACATGCAAGAATGCATGCTCCTATGAAGCCTCATAAATGTGAAACTTGTGGTGAAACATTTCAGCTCTTAAGTCATGCCAAAACACATTGTTTACCATCATCCGATGTCCTGAACCTCTTCACGGTGGTCCAGTTCCCAAACGACGCCTGCGAGTCCCCCGGCGTGGGGCTGACGGGGACGTGCTACCACCACCTGCAGTGCCGCTCCCTGGGGGGCCACCCGGGCGGCGCCTGCGCGCAGGGCTACGGCGTCTGCTGCCTGTTCGAGAAGACCTGCGGGGGCACGACGAGGCACAACTCGACGTACTTCGTCAGCTCCCCGTCGGCGgaggtcggcccggccgcggacgGCTACTTCAACTGCTTCCTGACGGTGGAGAAGATCGGGCCGGAGGTGACGCAGCTGCGGCTCGACTTCCTGCACTTCGAGCTGGCCGCGCCGACGGACGGCACCTGCGCCGAGGAGCGCTTCGTGATCGTGAGCCCCGACAGGAACGCGCCCACGCCCGCGCTCTGCGGCACGAACACCGGCCAGCACATGTACGTGCAGgtgggcggcgctggcggcgcggtcCGCCTGGGCGTGCAGTGGCgctcccccgccgctgcccccgccgcccccgctgccgcccccgcccccgcccccgcccccgggggccgccGCTGGGTGGTGCGGCTGACGCAGCTGCGCGCTCGCGAGGAGGGCGCCGCCCCCCCGGGCTGCCTCCAGTACCACACCGGCCACGCCGGCCGCCTCCAGTCCTTCGGCTACCTCTCCGGCTCCTACACTAACAACCTGAACTACGCCGTCTGTATCCGCAAGGAGGCCGGCTTCTGCAGCGTCACGTACTCGACGGAGACCTCCAACGGCACCACCGCGCCCTTCCAACTCCTCAACGAGGACCAGGACGGCGCTCCCACCATCCCtccggggcaggccggcgccgAGGTCCTCAACTGCCCCAGCGACTACATCGTCCTGAACGGCATCAGGCTGTGCGGGGAGCGGCTCAACGACGCCTCCGTCGACCCCGACTACACGCACAACAGCCCCGTCACAGACAGCGGGAGCGGCCCTTTCGTGCTGCCCGTGAGGACCAACGGCAACCTGACGGGCCGCGGCTTCAGCCTCGCCTACCGGCAGCTCGCTTGCACGGACGCTCCCGCCTGA
- Protein Sequence
- MANPSSINPVLVSDNVPWEPFGKTTRLEAQPTEPSSPTSSNRPKKLTMMLDMAWLEQEIKDLEDVKVESNQGSSAADMFPCSNCVVAFTSQVYLDKHKKYCRGPKAEAQCATMIVTTADSPTVTVLTNVNPIISQNLPTEPDRRHPGDVSQQGYPCPWCPTVSTSPAYLEKHKKRCQRKQHSLQQTHHPVPALQQTLHTQVYNGPIQQAKIEAEGQPTHHVLLQPQLQHLGEHHLSQFHFMDTLSQSVQAQVQAQAQAHVQAQAQAQAQAQAQAQAQVQAQVQAQVQAQVQAQTQAQAEAQVHAQGQTQAQGQAQVQVQVQHQTIPQQHSALKEEHPTLKEEHPTTTLLPLHLPLTAQEHGQTLVVTSAPSSMSQALEQALVVSASTTPTNISQAFVQTASASTPTSSSQSMTIMVPLSLGIPAMQLPLPVSMPSLVPLTLHQEGVNGIENSVTVSGTSGNSLSYLENSVPSNSAKPIEYRPGELPPMSCKECGEQFSNNLQLRKHILTHSKDKPFVCTTCWKIFKNGEDLEKHRTLHRPHSCTHCGERFRRLGHLKRHAMTHTGHKPYPCPSCNREFMDNVDLKRHIMTHSGEKPYRCQVCGDSFARSSNLRRHSIIHTGDKPHKCPECGDGFVDSFDLKRHLMTHTGERPYHCDYCGESFTRSSNLQRHQRKHTGVRPFSCDLCEKTFADKIDLKRHARVHSGEKPFACTKCGEHFARQSNLIVHFKSHTFKCTFCNERFDSQSCLDEHEQFHNVPNFLTCLHCQQDVLESDMNNHLLSHTEPGRDLFSCNLCDQKFLEEDDLKVHNRSHLVQKPHTCESCGERFARRSHLSRHALTHLDRKPFPCSECSKSFLDNVDLKRHMMTHTGERPFICTECGETFSRSSNLKQHSRIHTGERPYQCNTCNKQFSDSGVLRRHSLTHSGVRPYVCPECGERFSQKSHLISHNRTHSGEKPYGCSQCEEKFTERSNLRRHARMHAPMKPHKCETCGETFQLLSHAKTHCLPSSDVLNLFTVVQFPNDACESPGVGLTGTCYHHLQCRSLGGHPGGACAQGYGVCCLFEKTCGGTTRHNSTYFVSSPSAEVGPAADGYFNCFLTVEKIGPEVTQLRLDFLHFELAAPTDGTCAEERFVIVSPDRNAPTPALCGTNTGQHMYVQVGGAGGAVRLGVQWRSPAAAPAAPAAAPAPAPAPGGRRWVVRLTQLRAREEGAAPPGCLQYHTGHAGRLQSFGYLSGSYTNNLNYAVCIRKEAGFCSVTYSTETSNGTTAPFQLLNEDQDGAPTIPPGQAGAEVLNCPSDYIVLNGIRLCGERLNDASVDPDYTHNSPVTDSGSGPFVLPVRTNGNLTGRGFSLAYRQLACTDAPA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -