Ffus006251.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella fusca
Gene Symbol
-
Assembly
GCA_029379305.1
Location
JAHWGI010000307.1:696145-699264[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 34 0.022 1.9 9.9 0.9 1 23 17 39 17 39 0.99
2 34 9 7.7e+02 1.7 0.3 1 23 44 66 44 66 0.89
3 34 0.23 19 6.7 4.7 1 23 125 147 125 147 0.96
4 34 4.4e-05 0.0038 18.4 3.0 1 23 150 173 150 173 0.96
5 34 0.0011 0.091 14.0 4.0 1 23 179 201 179 201 0.98
6 34 4.2e-05 0.0036 18.5 0.3 1 23 207 229 207 229 0.96
7 34 3.9e-05 0.0033 18.6 1.7 1 23 235 258 235 258 0.97
8 34 1.5e-05 0.0013 19.9 4.7 1 23 264 286 264 286 0.99
9 34 9.7e-05 0.0084 17.3 3.1 1 23 292 314 292 314 0.98
10 34 1.7e-05 0.0014 19.7 1.0 1 23 320 343 320 343 0.97
11 34 6.4e-06 0.00055 21.0 5.3 1 23 349 371 349 371 0.99
12 34 0.55 48 5.5 7.3 1 23 377 399 377 399 0.96
13 34 1.6e-06 0.00014 22.9 1.4 1 23 405 428 405 428 0.98
14 34 0.047 4 8.9 10.6 1 21 434 454 434 456 0.96
15 34 6.9e-07 6e-05 24.0 1.1 1 23 465 487 465 487 0.96
16 34 3.6e-07 3.1e-05 24.9 2.1 1 23 493 516 493 516 0.98
17 34 0.09 7.7 8.0 12.9 1 21 522 542 522 544 0.96
18 34 6.9e-07 6e-05 24.0 1.1 1 23 553 575 553 575 0.96
19 34 4.8e-07 4.1e-05 24.5 1.5 1 23 581 604 581 604 0.98
20 34 1.4e-05 0.0012 20.0 4.7 1 23 610 632 610 632 0.99
21 34 0.055 4.7 8.6 6.2 1 23 638 660 638 660 0.98
22 34 0.00025 0.021 16.0 1.7 1 23 666 689 666 689 0.97
23 34 0.09 7.7 8.0 12.9 1 21 695 715 695 717 0.96
24 34 7.5e-07 6.4e-05 23.9 1.1 1 23 726 748 726 748 0.96
25 34 6.2e-07 5.3e-05 24.2 2.1 1 23 754 777 754 777 0.98
26 34 2e-06 0.00017 22.6 1.5 1 23 783 805 783 805 0.98
27 34 1.5e-05 0.0013 19.8 0.8 2 23 812 833 812 833 0.97
28 34 6.7e-05 0.0058 17.8 4.2 1 23 839 862 839 862 0.96
29 34 0.00015 0.013 16.7 5.4 1 23 868 890 868 890 0.98
30 34 0.097 8.3 7.9 2.0 2 23 897 918 897 918 0.95
31 34 6.2e-06 0.00053 21.1 3.1 1 23 924 947 924 947 0.95
32 34 7.3e-05 0.0062 17.7 0.6 1 23 953 975 953 975 0.98
33 34 0.012 1 10.7 5.6 1 23 981 1003 981 1003 0.97
34 34 0.0001 0.0089 17.2 0.9 1 23 1009 1031 1009 1031 0.97

Sequence Information

Coding Sequence
ATGAGATGTCAGCCCGATGTAGTTTTGCCTAGACCACCTACAGAGCTCTTTAAGTGCACTTTGTGCTACAGTAATTTTGAGAATGCTAACTCAATTGAAAAACATCTGCTTACGCATCTTGATCTATTGTATGAGTGCGATGTATGCTGTCAGAAGTTTCTTCAACTGGAAGAACTTGAAGAACATGCAGCACTCCATGAAGGTGGTGTCACAAGCGACGCGGGAACTTCAGAACTTTCGAATAGCTCAGACGCAGACTTCGACTTGGAGTCAGTGGCATTGTCTTCCAGTGACGATACGGATGAAAATTCTGTCTTCGATATGGACCTACGCGAATGCAGAGTGTCCAGGTCGCTCTTCAAAGGACCCTTCTTCAGCTGCGTAGTGTGCTCGAAAAGATTTCGAAGTAAGCAAGAGTGCAGAGAACATCGATCATCTCACAATGGGTTCGAATGTGTCTCGTGCAGCAAGTCATTTTCACGTGCGGACCATTTAAGAAAGCACCGAACACGGATTCATTCTAACGTCAGAGCATATTCTTGTCTTAAATGTAGTAAGTTGTTTAAGACGAAGGACGATTTGTCACATCATTCCCGAATTCATAGTAAGCTGAAAAACTATGTGTGTCGTCTTTGCCAGAGGCCCTTCAGAACAGCAGGCGATTTAAAAAAGCATCTTAGTGCGCATTCAGATGAAAGGTTGTACGATTGCAACCTGTGCTCGAAAGCATTCAAGCGCGCCAACCACGTAAAAACACATATGGAAACTGTTCACAGTGGGGATAGAGCTTTCAAGTGTGATTTGTGTGTGAAATGTTTCAAAACCGCACAACAGCTGAAGAATCACTTGCGGCGTCACAGTGACCAGAAATCTTATGCGTGTTCTGTCTGTAGCAAGGCGTTTAGCTGTACTTCTGATCTTAAGCGTCACATGAAAACCCACTCCGATGAAAGATCGTTTGAGTGCAGTCTGTGCTCTAAAGCATTCAAGCGAGCTGGTCACTTAAAATTACATGTTCAAAGTGTTCACAGTGGGGATAGAGCTTTCAAGTGTGATTTGTGTGAGAAATGCTTCAAAACCGCACAACACCTGATGGCTCACTTGCGGCGTCACAGTGACCAGAAACCTCATGCGTGTTCTATTTGTAGCAAGGCGTTTAGCTGTACTTCTGATCTTAAGTGTCACATGAAAACCCACTCCGATGAAAGATCGTTTGAGTGCAGTCTGTGCTCTAAAGCATTCAAGCGAGCTGATCACTTAAAATTACATATTCAAACTGTTCACAGTGGGGATAGAGCTTTCAAGTGTGATCTGTGTGAGAAATGCTTCAAAACCACAAACTGCCTGAATAAACACTTGCGGTGTCACAGTGATCAGAAACCTCATACACCTCATGCGTGTTCTATTTGTGACAAGGCGTTCCGCTCTACTTCTCAACTTACGATTCACATGAAAGTTCACTCCGATGAAAGGTCGTTTAAGTGCAGTCTGTGCTCTAAAGCATTCAAGAGAGCTGATCACTTAAAAATACATATGCAAACTGCTCACATTGGGGATAGAGCTTTCAAGTGTGATCTGTGTGAGAAATGCTTCAAAACCACACACTGCCTGAAGAAACACTTGCGGTGTCACAGTGATCAGAAACCTCATACACCTCATGCGTGTTCTATTTGTGACAAGGCGTTCCGCTCTACTTCTCAACTTACGATTCACATGAAAGTTCACTCCGATGAAAGGTCGTTTGAGTGCAGTCTGTGCTCCAAAGCATTCAAGAGAGCTGATCACTTAAAAATACATATGCAAACTGTTCACAGTGGGGATAGAGCTTTCAAGTGTGATTTGTGTGAGAAATGTTTCAAAACCGCACAACAACTGAAGACTCACTTGCAGCGTCACAGTGACCAGAAATCTTATGCGTGTTCTATTTGTAGCAAGGCGTTTCGCTGTACTTCTAATCTTAAGTGTCACATGAAAACCCACTCCGATGAAAGATCGTTTGAGTGCAGTCTGTGCTCTAGAGCATTCAAGCGCGCAGACCACCTAAAATTTCATATTCAAACTGCTCACAATTGGGATAGAGCTTTTAAGTGTGATCTGTGTGAGAAATGCTTCAAAACCACACACTGCCTGAAGAAACACTTGCGGTGTCACAGTGATCAGAAACCTCATACACCTCATGCGTGTTCTATTTGTGACAAGGCGTTCCGCTCTACTTCTCAACTTACGATTCACATGAAAATTCACTCCGATGAAAGGTCGTTTGAGTGCAGTCTGTGCTCTAAAGCATTCAAGCGAGCTAGTCACTTAAAAACACATATTCAAACCGTTCACGTAGGGGAAAGAGTTTTTAAGTGCGAATTTTGTGAGAAATCCTTTACGTCCGCTGACTATCTGAGGACTCACATTCTACGTCATAACGATCAGAAACATGAAGTGTGCTCTGTTTGTAACAAGGCTTTCCACACACCTGATGGCCTTAGGAAGCATATATCAACTCATTCCGATGAAAGGTTGCATTATTGCACCATATGCTCCACGGCGTTTAAGCGTCTTAGCCACTTAAAAATGCACATTCAACGTGTTCACATTGGGGATAGAGCTTTCAAGTGTGACGTGTGCGAGAAATGCTTCAAGACCGCAATATGCCTGAGGACACACTTGCAGAGTCACAGTGGCCAGAAACCTAATGTGTGTTCTCTTTGTAACAAGGCGTTCCGCACTACCGCTAGACTTGCGTGTCACGTGAAAACTCACGTTGATgaaaagccgtttgagtgcacccTTTGCTCTAAATCTTTCAAGCGTTCCGATCATCTGAAAAACCACGTTCAGCAAGTTCACTCCGAAGATAGAGAATTTGTCTGCCCGATTTGCAGCAAGTCCTTTAAGATATTTGAGACTCTTCGATCGCACCTGTTAAGCCACTCTGGAGAAAAGCCCCACAAATGTCACGTTTGCAAGAAGCGTTTTAAAGCCAAAAACGTGTTGACTTTACATCTAAAGGAACACTCCAATGCCAGACCTTTTAAATGCAGTCTTTGTCCTAGTGAATTCAAGCGATCTGGTCACCTTAAAGCTCATCTGATAGCACATGCTCGTGCTTCTAATCGTGAGACCTGA
Protein Sequence
MRCQPDVVLPRPPTELFKCTLCYSNFENANSIEKHLLTHLDLLYECDVCCQKFLQLEELEEHAALHEGGVTSDAGTSELSNSSDADFDLESVALSSSDDTDENSVFDMDLRECRVSRSLFKGPFFSCVVCSKRFRSKQECREHRSSHNGFECVSCSKSFSRADHLRKHRTRIHSNVRAYSCLKCSKLFKTKDDLSHHSRIHSKLKNYVCRLCQRPFRTAGDLKKHLSAHSDERLYDCNLCSKAFKRANHVKTHMETVHSGDRAFKCDLCVKCFKTAQQLKNHLRRHSDQKSYACSVCSKAFSCTSDLKRHMKTHSDERSFECSLCSKAFKRAGHLKLHVQSVHSGDRAFKCDLCEKCFKTAQHLMAHLRRHSDQKPHACSICSKAFSCTSDLKCHMKTHSDERSFECSLCSKAFKRADHLKLHIQTVHSGDRAFKCDLCEKCFKTTNCLNKHLRCHSDQKPHTPHACSICDKAFRSTSQLTIHMKVHSDERSFKCSLCSKAFKRADHLKIHMQTAHIGDRAFKCDLCEKCFKTTHCLKKHLRCHSDQKPHTPHACSICDKAFRSTSQLTIHMKVHSDERSFECSLCSKAFKRADHLKIHMQTVHSGDRAFKCDLCEKCFKTAQQLKTHLQRHSDQKSYACSICSKAFRCTSNLKCHMKTHSDERSFECSLCSRAFKRADHLKFHIQTAHNWDRAFKCDLCEKCFKTTHCLKKHLRCHSDQKPHTPHACSICDKAFRSTSQLTIHMKIHSDERSFECSLCSKAFKRASHLKTHIQTVHVGERVFKCEFCEKSFTSADYLRTHILRHNDQKHEVCSVCNKAFHTPDGLRKHISTHSDERLHYCTICSTAFKRLSHLKMHIQRVHIGDRAFKCDVCEKCFKTAICLRTHLQSHSGQKPNVCSLCNKAFRTTARLACHVKTHVDEKPFECTLCSKSFKRSDHLKNHVQQVHSEDREFVCPICSKSFKIFETLRSHLLSHSGEKPHKCHVCKKRFKAKNVLTLHLKEHSNARPFKCSLCPSEFKRSGHLKAHLIAHARASNRET*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-