Ffus010883.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- RRM3
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000723.1:783684-792394[-]
Transcription Factor Domain
- TF Family
- THAP
- Domain
- THAP domain
- PFAM
- PF05485
- TF Group
- Zinc-Coordinating Group
- Description
- The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion. It features the conserved C2CH architecture (consensus sequence: Cys - 2-4 residues - Cys - 35-50 residues - Cys - 2 residues - His). Other universal features include the location of the domain at the N-termini of proteins, its size of about 90 residues, a C-terminal AVPTIF box and several other conserved residues. Orthologues of the human THAP domain have been identified in other vertebrates and probably worms and flies, but not in other eukaryotes or any prokaryotes [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.2e-11 8.8e-09 36.8 2.1 1 85 57 135 57 137 0.79 2 3 7.1e-11 7.6e-09 37.0 1.9 1 85 210 288 210 290 0.79 3 3 2.1e-09 2.3e-07 32.3 1.8 1 85 381 466 381 468 0.79
Sequence Information
- Coding Sequence
- ATGTCTGATGTGGGATGGTGGTGTGTGGTTGGATCAAAGTTTGCTCATAGTGTATCAGATGTAGGTAACGGAACTGGAACTGTTGCTGCCACTGAATCTGTTCAAGTTTGTAGTAGTGGTGACACCGATGATGTGGATTTAAGGCACAAGAAATTGTCATGGCGAAGGTGTTGTTTCAAAGCATGTTTGTTGAGTCGCTGCAGCAAAGGCACCCTTCATTCATTCCCTAAGGGCGAAGAAAACTTGACGAGaTGTAAAGAATGGATTAAGAATTCAGGGAATTCTGAGTTATTGGCTGCTTCTAGGGATTGCTTGTCAAGAAAGTTTGTTTGCGGTAGTCACTTTGCCAATGATAGTTATGTGAACAGGAAAATTGGTCGCTTGAAACGTGATGCTGTTCCAACTGAAAATCTTTGTGATGTGTTTGTAGATACTCAAATTGCTAATTATCAATTGTCTCAAGAAAGTTGTACATCTACTCAAGAAATTGTTGAGAGCAATATTCTAGGTGTATCAGATGTAGGTAACGGAACTGGAACTGTTGCTGCCACTGAATCTGTTCAAGTTTGTGGTAGTGCTGACACTAAAGATGTGGATTTAAGGCACAAGAAATTGTCATGGCGAAGGTGTTGTTTCAAAGCATGTTTGTTGAGTAGCTGCAGCAAAGGCACCCTTCATTCATTCCCTAAGGGCGAAGAAAACTTGACGAGaTGTAAAGAATGGATTAAGAATTCAGGGAATTCTGAGTTATTGGCTGCTTCTAGGGATTGCTTGTCAAGAAAGTTTGTTTGCGGTAGTCACTTTGCCAATGATAGTTATGTGAACAGGAAAATTGGTCGCTTGAAACGTGATGCTGTTCCAACTGAAAATCTTTGTGATGTGTTTGTAGATACTCAAATTGCTAATTGTCAATTGTCTCAAGAAAGTTGTACATCTAATGAAGGAATTGTTGAGAACAATATTCCAGGTAATGTTGCCAACTTGCATGACATGCAGAACATAAGTGATGGAAGTCGAAATCAATGTTCAAGTGAAGGAATGTGTTGTGATGATGGTGTTGAGTCAAGTTATGCTTCCTTGAATGTAATTAGTGAAAGCAGGGTCACACTGGTTCCCATGGCCAAAAGTAGTTGGCGAAAATGTTGTTTTAATGGGTGTGCTGGTGATTGCACTAATCGAACGTTACACACATTTCCTAGAATTTTTTGTAATGGTCATTTGAATGTGAACAACTTAAAAAGGTGTGGAGAATGGATTCAGGCATCTGGAAATGAATCATTGTTAACTGTTCCAAGCAGTGATCTTTATAACAGATATTTTGTCTGTAGTTTTCATTTTTCCAAAGATAAATACTTCAATGGGCGGAGTAAAAAGATACGCATTGATGCGGTGCCAACTGAAAATATTGTAGGTATGCTGTCCTCTAATGTGATGACGAAATTTCCTGTTTGGGATTGTAATGTTATTAATTCAGaTATTGTTGATGAAAATGTTGGAACTGGTGGAGTACTGAACAGGTCTGTGACTCCAAATTATGATGGATATCAACAGAAATTTGAGGATCATATGAAGAGTGGTGTGTGGAGTACTTGTGAGCAGTGTAAGGAAAGATTTCTACATCGCGgcaaacggaaaaaaaagtgcATTCACAAGTCTGATGTGTGTAAAAGCTTGAGTTGTGAGAATGGTATGGATCCTGGCACAGTTCCAGATGTTTTAAGTGGATTGACGTATGTTGAAGAGCAGCTTATTGCCAGAATTCATCCTGTTGTTTCATTATTCAAAATTAAAGGACATCAGTTTGGTTACTCAGGAAATGTCAtcaattttcctcaaaaagttgaaaattttgcTAAAGTTCTTCCACATAAAGTTACTGATTTGGCAAGTGTTGTCACTGTGCGAACTAACAGTTCCATTACATCAAAGGATTTTCATGTAAGAGGTGCGAAAGTTTTGGAAGCTCTGAAGTGGTTAAAGTGTAATAACAAATATTATCACGATATAGAAATATCTTTGGAAAATATCAGTATCTTACCTGTTGATGGAAATGTGTTTGATGAAATTAGAAGTATGCAGAGTTCAAGCTTGAATGAAGATGATGATAGTCAAGATGCTGATGGTGAAATTGAAAATAATGTTGTTGAAACAAATGTTCCTTGTGTTGCTGTTCCCACTCAAAATGATTCTATTCGAAGTGTCCTAGACTGGCCTGAATTGGGTTGTGTTCCCATTAATGAATTCAAATCTGATGGTTATATAGCACAAGCTTTTCCATGCTTATACCCTACTGGTGAAGGAGATTTAAGAAGTCCAAGAGATATTATAATAAAGCCATCAACATATTTTAAGCATATGATAAGATATCATGATGAGAGGTTTGCAAAACATCCTCGATATCGATTCTTTGCATTGAATTCTATGATGAGATGGACTGCCTTAAGTGATGGCAATATGTTTGTTGAACAAAATCCTGAGTACGGTAGCATGACTGTAAAAGAATTGAAAGATAAATTAAAAGTAGATTCTAAAGTATTGTCCAAAATTATGTTTCATGGAAGAAATATTCGTGGAACCAAGGCATTTTGGAGAGCAAGATCAAAGGAACTAGTTGAAATGGTTGAGCAGCTTAAATTACcaactttattttttactttgagtGCTGCAGACTTACACTGGCCTGAGCTGTTTGCCATTTTATCACCAGATGAAGATCAGATTACTATGACCGAGGGCAGGAGACGCCAACTTATTCAAGAAAACCCTGTTATTGTTGACACTTTTTTTCTTGATCGTGTTGAGTCATTTATTGATCTAGTTTTAAGGCCCAAGTTTAATGTGAAAGACTTTTGGTTTAGGATTGAGTACCAGCATAGGGGAAGTCCGCATGTTCATGGAGTATTGTGGTTGAGTGATGCCCCTGATGTTCTTAAATTAAATTCAATGTCAAGTGAAGAGCTTGAAGAAATTGTTAAGTATTATGACAATTTAATATGTACCATACATCCAGATGTGAATTGTCCTCCAGCTGTTTTGCATCCATGCCGAACGTTTTTATCGGAAGCTGTAAATATGCGAACTGATCTAGCTGAATTATTGAACAAAGTTCAACGTCACAGTTGCTCAAGCAGTTATTGCAttcggaaaaataaaaagactgGTGTTACTGAATGTCGATTTAAGTTTCCTTTTGAAATGGAAACTGTTTCACAATTGAAGTTGAATGAGAGTGGATCTTATGAGTTGTTGACTGCCAGGAATGATGAACTGTTAaacaaatataataaatatattaTTCAGTCATGGAGGGCAAACATGGATATTTCTCCTTGCTTATCAAAAGAAGCTTTATTATCTTATCTCACCAAGTATGTAACTAAATCTGAAGTTAAGTCAAGACATTTGGAGGAAACTATGAAAGTTGTATTTGATCGAACATCTGACGATAAGGCAGCCAAGGAAGCTGTTCAGAAATTATTTATTCAAACGTGTTGTGAGCGTGACTATTCTGCTCAAGAAGTATGCCATTTGATAATGGGCTTAAAGTTAGTATCGTCAGGTGGCCGTGACTTTGTTTCTGTACGAACTAGTAATGATGAAAAGTGGACACGCCTTTCAAAGAAGAGTGGACAAGTTCAACAGAGTTTTGTTGATAAATACAGGTGTCGTTCTGATGAACTGCATGCAATGTGTTTGTGGGAAGCTGCTCAGAAAGTTTACTTACCATCTGGTAAAAGGCGAACAAAAAATGCCATAGTCTTAGTTTATCCAAAGCTACGTAGAAGAAGTAATGATTTGAATAAGGAAGAATGGTATAGACAACAGGTTTTGTTGTATGTGCCATGGAAACATGATGAGAAGATGTTTGAAGCAGAAGGTTCATGGGAAGAGCTTTATGATAAGTATAAAAATGAAATTGTCAAGTTTTGTGGTGATTTTGATGTTGGGCCTGTAGAATGTGATGCTGAGTATGAAGAAATTGTTAATGAGTCTGATCGTACACTATGTGCGGTTGAAGATTACATGAGTGTTTCTGCAATGGCACCCGGTTCTATCTTGCAATCTGTTGATCTTGGTGATAGGGAGATTGATGTCATGTATGACTGGAATGCTAATTGTATTGTTAAAGATCGAAGTGTAACATCAGTTAGATCTCTACAACAATTTATATATATGTCAAAGAAGTCTGCTGAAAGTTGTTCTGAAAGTGTTTCTGTGATGCCAAATGTTACATTCAATGAAGAACAGACAGAAGTTCTAAGAATTGTTGAGAAACAAATTCAATTCCTTAAAGATGGAGGTGGTACTGCTGTCAAAAATTTTCCCAAGCAAGTGATAGTTCAAGGCAAAGCTGGAACAGGGAAGAGTTTAGTTATACATGCTATGCAAGGCTTGATAAATAGTGCTCTTGGAGATGGCACTGTATTGCTTGTTGCACCGACTGGTGTTGCAGCTGTAGGCATTGGTGGTGCAACTATCCATTCCAAACTTCATATTTCTCAAAGTAATGAGTTTCATCCTATGCGTGGCAGTTCAGCAAGAAAATTTATTAATGAAATGGAAAAGGTCAAATTTCTAGTTGTTGATGAGTACAGTATGATTGGGCTTAATTTACTTGGAATGATGGAGAGAAGATGTCGTGAAGGAAAAGGATCAGAAGATATGTTTGGTGGCCTTTTTGTTTATCTTTTTGGTGACATCAAACAATTGAACCCTGTGCTTGACACTGCTTTGTATGATGTTCCTCGACCTTATATGGAAGTTGCTTTACATGGTAAAGTTGCATTTGAAAGTTTTGATGGTGCTGTTGTGCTATCTGCAGTGATGCGTCAGAAAGACAATAAATTTAAGCAGTTGTTAGACAATGTGGGCAGTGGCAAAGTAACAATTGAAGACTatagGGAGATTGATCGCGATCCTTTACCGGAGAGTGTGCGAAGGAGTGTGAAACGTTTGTCAGTGTTCAATCTGCTGAGACGCGAAAGGCTACGACTGCGGACTCTTGCATACCTCGCCAAGCAGAAAAAGGATAGACGGTGGTGGGTCCGTCCCATATTCTTGGACCGAAAACTAGCAGGAGCTTGGTTTTCTCTAATTCCTGTGATGAGAGAATTTGACCATGACGCTCATTTCAATTTCCTGCGGATGACTCCAGCTGGTTTTGACTGGCTGTTGCAGAAAGTGTCACCCTTTTTAACAAAATCTTCAATTCGCCGAGAACCTATATCTGCTGGTGAAAGATTGGCCATTACTTTAAGGTACCTTGCATCTGGAAACAGTCAGGTGTCCTTATCATACTTATTTCGAATATCGGACAGTGCAATTTCTAAAATAGTGTTTGAGACAACAGCCGTCATATGGTTTGTCCTGAAGGATATTGTTTTTGAACCACTCAGTGAAGAATTTTGGAAAAGGAAGGCTGCCGAATTTGAAGCGATGTGGAATTTTCCCATGTGTGTCGGAGCCCTTGATGGCAAACACTGCTTTGTTCAGAAATTCCCAATGAGAGGTTCAGAATGCTACAACTATAAATTTGGCCACAGTTTAATTCTTTTTGCTGTATGCGATGCAAAGTACAAGTTCATTGTTGTTGATGCGGGTGctcgagggagggagagtgatgGAGGTGTTTTTGAAAGATCTGAGTTTGGCCGACTTTTCAGCAGTCgtcagctgcagctgcccccTCCACAATACAATGAAGACTTGAGGTGTAATCTGTCTTACGTATTTGCTGGAGACAATGCATTCCCGCTAGATGTGCACCTCATGACTCCCTTCGAGCGCAACCTACAGCCAGAAGAAATAGTTTTCAACTACCGACTTTCAAGGGCTAGAAGAGTGGTGGAAAATGCCTTCGGTATTTTGGCAGCTCGCTTCAGAATCTTTCGCTGTAATATAGTTGGAAGTGAAACGCTCGTCCAGAATATCATTCTTGCCACCACTGCTTTACACAACTACCATTTAATGCGAGAGGATAGCATTCCACCTAAGGAAAGAATTTATGTGCCACCAGAATTTGTAGATACTTACAAGAGCAATGGACGAGTGAAGAAAGGGAGGTGGAGAAATGAGAACAAAAAAGTGGAAAGTTCAATTTTTAAGAAACTGTCAAACATTCAACAGATTCCTAATCAAGATGACTTAACTGCAAGtgaaatgcaagaaaaattCTTGGAGTTGTTCATAATGAAACCTCTTCCTTGGCAATATGATGAGCTGCCTGATgtgtactaa
- Protein Sequence
- MSDVGWWCVVGSKFAHSVSDVGNGTGTVAATESVQVCSSGDTDDVDLRHKKLSWRRCCFKACLLSRCSKGTLHSFPKGEENLTRCKEWIKNSGNSELLAASRDCLSRKFVCGSHFANDSYVNRKIGRLKRDAVPTENLCDVFVDTQIANYQLSQESCTSTQEIVESNILGVSDVGNGTGTVAATESVQVCGSADTKDVDLRHKKLSWRRCCFKACLLSSCSKGTLHSFPKGEENLTRCKEWIKNSGNSELLAASRDCLSRKFVCGSHFANDSYVNRKIGRLKRDAVPTENLCDVFVDTQIANCQLSQESCTSNEGIVENNIPGNVANLHDMQNISDGSRNQCSSEGMCCDDGVESSYASLNVISESRVTLVPMAKSSWRKCCFNGCAGDCTNRTLHTFPRIFCNGHLNVNNLKRCGEWIQASGNESLLTVPSSDLYNRYFVCSFHFSKDKYFNGRSKKIRIDAVPTENIVGMLSSNVMTKFPVWDCNVINSDIVDENVGTGGVLNRSVTPNYDGYQQKFEDHMKSGVWSTCEQCKERFLHRGKRKKKCIHKSDVCKSLSCENGMDPGTVPDVLSGLTYVEEQLIARIHPVVSLFKIKGHQFGYSGNVINFPQKVENFAKVLPHKVTDLASVVTVRTNSSITSKDFHVRGAKVLEALKWLKCNNKYYHDIEISLENISILPVDGNVFDEIRSMQSSSLNEDDDSQDADGEIENNVVETNVPCVAVPTQNDSIRSVLDWPELGCVPINEFKSDGYIAQAFPCLYPTGEGDLRSPRDIIIKPSTYFKHMIRYHDERFAKHPRYRFFALNSMMRWTALSDGNMFVEQNPEYGSMTVKELKDKLKVDSKVLSKIMFHGRNIRGTKAFWRARSKELVEMVEQLKLPTLFFTLSAADLHWPELFAILSPDEDQITMTEGRRRQLIQENPVIVDTFFLDRVESFIDLVLRPKFNVKDFWFRIEYQHRGSPHVHGVLWLSDAPDVLKLNSMSSEELEEIVKYYDNLICTIHPDVNCPPAVLHPCRTFLSEAVNMRTDLAELLNKVQRHSCSSSYCIRKNKKTGVTECRFKFPFEMETVSQLKLNESGSYELLTARNDELLNKYNKYIIQSWRANMDISPCLSKEALLSYLTKYVTKSEVKSRHLEETMKVVFDRTSDDKAAKEAVQKLFIQTCCERDYSAQEVCHLIMGLKLVSSGGRDFVSVRTSNDEKWTRLSKKSGQVQQSFVDKYRCRSDELHAMCLWEAAQKVYLPSGKRRTKNAIVLVYPKLRRRSNDLNKEEWYRQQVLLYVPWKHDEKMFEAEGSWEELYDKYKNEIVKFCGDFDVGPVECDAEYEEIVNESDRTLCAVEDYMSVSAMAPGSILQSVDLGDREIDVMYDWNANCIVKDRSVTSVRSLQQFIYMSKKSAESCSESVSVMPNVTFNEEQTEVLRIVEKQIQFLKDGGGTAVKNFPKQVIVQGKAGTGKSLVIHAMQGLINSALGDGTVLLVAPTGVAAVGIGGATIHSKLHISQSNEFHPMRGSSARKFINEMEKVKFLVVDEYSMIGLNLLGMMERRCREGKGSEDMFGGLFVYLFGDIKQLNPVLDTALYDVPRPYMEVALHGKVAFESFDGAVVLSAVMRQKDNKFKQLLDNVGSGKVTIEDYREIDRDPLPESVRRSVKRLSVFNLLRRERLRLRTLAYLAKQKKDRRWWVRPIFLDRKLAGAWFSLIPVMREFDHDAHFNFLRMTPAGFDWLLQKVSPFLTKSSIRREPISAGERLAITLRYLASGNSQVSLSYLFRISDSAISKIVFETTAVIWFVLKDIVFEPLSEEFWKRKAAEFEAMWNFPMCVGALDGKHCFVQKFPMRGSECYNYKFGHSLILFAVCDAKYKFIVVDAGARGRESDGGVFERSEFGRLFSSRQLQLPPPQYNEDLRCNLSYVFAGDNAFPLDVHLMTPFERNLQPEEIVFNYRLSRARRVVENAFGILAARFRIFRCNIVGSETLVQNIILATTALHNYHLMREDSIPPKERIYVPPEFVDTYKSNGRVKKGRWRNENKKVESSIFKKLSNIQQIPNQDDLTASEMQEKFLELFIMKPLPWQYDELPDVY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -