Ffus026914.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- clz9_5
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010001432.1:99251-101520[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-08 3.1e-05 24.4 0.0 3 43 86 126 84 127 0.90
Sequence Information
- Coding Sequence
- ATGAGACGGCTGCGCTCAGGAAGGCCCCTCGCCGCGGAGACCGAGTCAGCGACTAGGCTCACGCCTGAGAGTGGTGAAGCTGCCCTAAGTCCTGCACCTCAACCTCGTCCTCACTCTTGGCGTATTCCTGATCGGCCGCGTACACCTCCACCAAAGCGCAAGTGTGCCAGAAGAGCGTTGGTGCAACAGCCACTCAGGTGCTCGCCTAGGAAAAAAAACCGGGGAAGGTACCAACCTAACACACCTAGTCGCCCGAAGAGACTGATGAGAGCGTGTCAAGCGGTGGCAGAAGGCATGTCTGTGCGTGTGGCAGCACACACTTACAATGTGCGCAGATCAACTCTTAGTGATGAGTGCCAAAATAAACACCCCAAGGCCAAGGGACGGCCAACAGCACTCACCGCCACAGAGGAATCGGTCCTAGTTGACCACCTGTTGGTTCAAGCAGATTGGGGTTTTCCTCTCAGCAGAGCAGATGTGAGTGTTTTAGTAAAAGAATATCTAGACAAAAGTGATAAACGTGTGACACAATTTAAGGACAATTTGCCTGGGTGGCGTTGGGTGAAAATGTTTTTGGAGCGGCACCGCAGGCTGAACTTTCTGGTCCCGAAACACATTAAGACATCACGTTCAAAAGTAGATCCTGATACGGTCacaaaatattttgagaatCTTCAGGAATCTACTAAAGATGTGCCTCCACAAAACATCGTAAACTACGATGAAACTAGTGTGGCCGACACGCCTACTGAAAAGAAACTGATTGTGCGGAGGGGGGAAAAATATCCTGTGAAGTGTGTCACGACCTCGAAAAGTGCCATGTCGGTCATGTTCGCGGGGACTGCAGCTGGGCATATGTTTCCACCCTACGTCGTCTACCGAAGCAAGGAGCTGACAGAGAGCTGGACTACTGGTGGGCCACCCGGTACCCGCTACAACCGCTCGAAGTCGGGTTGGTTCGACAAGATCATCTTTGAAGACTGGTTTTTAACCATTATTTTGCCTTGGGCGCGTAATACTGATGGCAAGAAAGTGTTGATTGGCGACAATGTGTCGTCGCATTTCAGTGCCAAAGTTATTGAACTCTGTGCAAAGCACAATATTAGCTTCGTGTGCTTACCGCCGAACTCCACCCATCTACTGCAGCCATTGGATGTGGCATTTTTTAGTCCACttaaaactgcttggaaacgtATCCTGCTAGAATGGAAAGACCAGGATTCCAATAGGCATTTAACTCTGCCAAAGCCCCATTTTCCATGCCTGTTGAGGAGACTCGTCGATGAAATTTCAGAGCGGAGTGAGCAGAATTTAAAGAGTGGTTTCCGTGCTACTGGGATTTTTCCGCTCGACAAAAATGAAGCCTTGAAAAGATTTCCAGGATATTTGGGTTCACCAGGCCGACAAGAGATTTACAAACGTGTGTCAGATAGTTTCATTGAGAAACTTCAGGAAAAGCGCTATGGGAACCAGAATGCTCGTCGCGGAGGAAAGAGGCTCCGAGTTTCACCTGGGAAAAGCTGGGCCCCGGAAGACCTCCCAGGAGTTTCTGAtgaggaaaaggaagaagaatCTGACCCTGATGATCCAGgtGAAAATACTCAAGCTACCCCGAAGCGATCCATGCAGCCACGTCGTCGAGGGCGGGTACAACTTCACCGTAGTGATTCACCGGACAATAATGGTGTCCCTGGTAATTTCGAAGCGAAACCCGGAGACTGGGTGCtggtaaaatttgcaaaaaaacgGAAGGTTTCACATTCCATTGGTTATGTCAATTGTATTGATGAGAATTACGAACTTTCATGCAAATTCCTTCGTCCAAGTGACAAACCAGGACACTTTATATGGCCACATGAGCCAGTAACCAAGTCTGTTGACTATTCCGACGTGGAAAAAGTTTTGTCCGTACCCAAAAAACTTAAAAGGAAGGGTACTCCTCTTAGATTTGAAGAATCCTTTGAAGGCTTTAACATTGAGTGA
- Protein Sequence
- MRRLRSGRPLAAETESATRLTPESGEAALSPAPQPRPHSWRIPDRPRTPPPKRKCARRALVQQPLRCSPRKKNRGRYQPNTPSRPKRLMRACQAVAEGMSVRVAAHTYNVRRSTLSDECQNKHPKAKGRPTALTATEESVLVDHLLVQADWGFPLSRADVSVLVKEYLDKSDKRVTQFKDNLPGWRWVKMFLERHRRLNFLVPKHIKTSRSKVDPDTVTKYFENLQESTKDVPPQNIVNYDETSVADTPTEKKLIVRRGEKYPVKCVTTSKSAMSVMFAGTAAGHMFPPYVVYRSKELTESWTTGGPPGTRYNRSKSGWFDKIIFEDWFLTIILPWARNTDGKKVLIGDNVSSHFSAKVIELCAKHNISFVCLPPNSTHLLQPLDVAFFSPLKTAWKRILLEWKDQDSNRHLTLPKPHFPCLLRRLVDEISERSEQNLKSGFRATGIFPLDKNEALKRFPGYLGSPGRQEIYKRVSDSFIEKLQEKRYGNQNARRGGKRLRVSPGKSWAPEDLPGVSDEEKEEESDPDDPGENTQATPKRSMQPRRRGRVQLHRSDSPDNNGVPGNFEAKPGDWVLVKFAKKRKVSHSIGYVNCIDENYELSCKFLRPSDKPGHFIWPHEPVTKSVDYSDVEKVLSVPKKLKRKGTPLRFEESFEGFNIE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00731419;
- 90% Identity
- iTF_00731419;
- 80% Identity
- -