Ffus014283.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- bab2
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000990.1:1862009-1868692[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-10 8.4e-07 29.4 0.0 2 38 78 114 77 119 0.91
Sequence Information
- Coding Sequence
- ATGGTGTCTGACGTGTGGCGCTTCTGCTCGCGCCTCGCCGACAACCTCGTCCGCTGCAACTACTGCGGGCGCGTCATGACGTACCACGGCACCACCAACCTCCGCGTCCACGTCGGCCGCCACTTCGGCATGAAGCCCATGAGAAACTTTCAGACGGGCGGGTTCATACGGAAAATATCACGTATGTGCCCGACAGTGTTGTTCAAACGTGGCTGCTACGGGCAGTACTCTAAGGAGCAGATGTTGTCCGCTATTCAGGCGTACCAATGTGGTCTTATGGGACTGAACGAAGCGGCCAAGTGGTTCAACATCCCTCGTGCCACTCTCAGGCGGAAAGTCGAAGGGTTGTCCGTGAAGGGCATCGCACCTAACGTTCGGGGGTTCGATTTGTCCACGAAAGTGCCGCCCCAGCCGGGGACGAACACGGtggacggcgcgggggcgggcgcggggccgggcgcggggccgcagccctcggcctcggtgggccggccgccggcgcagcCCAAGCAGCAGATGGACGTGAAGCGGGAACCCCTGTCGCTGGCGTCGCCCCGGGAGCGGCCGTCGCCCAGCAGCCACCCGCAGCCCGCCATGCCCTCGCCCGCGAGCCACCCCGCGTCCATGTCGACGCCCCCGGGACACCCGGGAcacccggcggccctgcccgcgggACACCCGGCCGCGCACCCGGGccaggcgctgccgccgcccccgcgccgctccgcccccgcgcagaTGCGGCCGCCGTCGCCCAGCCTGCCGCCCcagacggcggcgccgccccctgaGGTGTGCCTCCGCTGGAACAGCTATCACTCCAACATGCAGGCCACCTTCCCCTCGCTCCTCAACAACGAGCAGTTTGTGGACGTCACTCTCGCCTGCGAGGGCCACAGCATCAAGTGCCACAAGGTCATGCTGTCCGCATGCAGTTCATATTTCGAAGAGCTGTTAAGTCAGAACCCCTGTCAGCACCCTATTGTTTTAATGAAAGATCTACGCTTCTGGGAAGTACAGGCACTTGTTGACTTCATGTACAGAGGTGAGGTCAATGTCACCCAAGACAAACTGCCCTCCCTCTTAGCTGCTGCAGAAGCTCTCCAAATTAAagGTTTGGCTGGTCCTGCATCAAATTCAAACGATGGGGGGTCTAATTATGATGATACTGTAAGAAACAATGCTGCTACACGAAGGAAACGACAAAGGCCAATACCAGATCCTGCTGAACTTCTTCCTCGTAATCCTGTTGGGCGCCCTAGAATTCATCCAAAAGTTCAACAACGTCCACCACCTGCCCCTGTAGCACAGCCTGGTATGCCACCTCGCATACAGGTGAGATCAGAGCAGCACTTGCAGCGGCCAATTCAGCTGGATGATGGGCCTCCAGCACAGAGGATGAAAATTTCTCCCCCAGCTAGCCCAGCTGTGAAATGTGAACCCTTGGAAACTGACCTAAGCAATGACTCTGTGGACAAGATTCGATATGATGGCGGTGATTCGGGACGATATGATGGAGCTGATTCTGGAGGCAGTGGCGATGGCAGTAATCATGGTGATGCACTTGTGGACCTTAGCCAAGGACGCTTCAGTATAAACAATGGCCTACAATCCGACCGAAATCGAGATCATTCAGACAATGAACATGATGACGACAGGCACATGGATGACGAAGATGATCGGGAGGTAGACCGCGGCCAGGATATTGACCGGAACCAGCATCAGTTACGAGATCACCACGACATTGAACAAGATAATGACCATGACGACGACCAGGATGTGGACCAGGACCATGACAATGACCAGGAACGGGACAATGACCAAGGATTAAACATGGGTGGGAGTGAAGATGACCAGGACATTCATTCTTCAGATGAAGATCAATATGAGAATGAGCCTCAGCACACTCAACATCCCCATCCTCAAGATTCTAGACAACAGGGCGACCATTTGCCTGACCACCTGATGGGGCGGTTGTAA
- Protein Sequence
- MVSDVWRFCSRLADNLVRCNYCGRVMTYHGTTNLRVHVGRHFGMKPMRNFQTGGFIRKISRMCPTVLFKRGCYGQYSKEQMLSAIQAYQCGLMGLNEAAKWFNIPRATLRRKVEGLSVKGIAPNVRGFDLSTKVPPQPGTNTVDGAGAGAGPGAGPQPSASVGRPPAQPKQQMDVKREPLSLASPRERPSPSSHPQPAMPSPASHPASMSTPPGHPGHPAALPAGHPAAHPGQALPPPPRRSAPAQMRPPSPSLPPQTAAPPPEVCLRWNSYHSNMQATFPSLLNNEQFVDVTLACEGHSIKCHKVMLSACSSYFEELLSQNPCQHPIVLMKDLRFWEVQALVDFMYRGEVNVTQDKLPSLLAAAEALQIKGLAGPASNSNDGGSNYDDTVRNNAATRRKRQRPIPDPAELLPRNPVGRPRIHPKVQQRPPPAPVAQPGMPPRIQVRSEQHLQRPIQLDDGPPAQRMKISPPASPAVKCEPLETDLSNDSVDKIRYDGGDSGRYDGADSGGSGDGSNHGDALVDLSQGRFSINNGLQSDRNRDHSDNEHDDDRHMDDEDDREVDRGQDIDRNQHQLRDHHDIEQDNDHDDDQDVDQDHDNDQERDNDQGLNMGGSEDDQDIHSSDEDQYENEPQHTQHPHPQDSRQQGDHLPDHLMGRL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00731973;
- 90% Identity
- iTF_00731973;
- 80% Identity
- iTF_00731973;