Ffus019148.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- clz9
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010001200.1:28964-30558[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.2e-10 8.3e-07 29.4 0.1 5 37 1 33 1 37 0.92
Sequence Information
- Coding Sequence
- ATGGAGAAGGCCGTGTTGGCTGTGCAGAGAGGGATGTCAGTGCGCCAAGCGGCCTACGTGTACAACGTCAGGAGATCAACGTTGAACGATAGGACCCTCAAACCTAGCCTGAGGCCGACAGCTGGAAGGCCCATTGTTTTATCGCACACCGTTGAGGAGGCCATAGTGGCGCATGTGTCAACACAAGCTGAGTGGGGATTCCCCCTGTGTAAGTTAGATCTCCAGCTTATTGTCAGAGACTATTTAAACGCACAGCAGATCGTGGAGAAGAGGTTTAAGGATAACACACCAGGAAACGCATGGCTCCGGTGCTTCTTTAAACGTCATCCCGAATTACGCGTTTCGAAGCCGAAACTGCTCTCTTCAAGTCGTGCCAAAGTAAACCCTGATCAGttgaaaaaatatttccaaaatttaAAAGAGTCACTGGAAGGCGTGCCGCCAGAAAATATTTATAATTATGATGAAACTAATTTGGCAGACGATCCCTCTCAGAAAACTGTGGAAGTTCGGAGGGACCAGAAATACCCTACCAAAGTGCTGACTTCCTCCAAGACCGCAACGTCTCTTATGATTGCGGGCACTGCTACTGGTGAACTGTTACCCCCCTATGTAGTGTACAGATCCAAGGAACTAAGTGAGACATGGGTCACCGGCGGGCCGCCAGGTACACGATACAACCGTTCGAGATCTGGCTGGTTCGATCGTGTAATTTTCACTGACTGGTTTAGAAACATCCTTGTGCCAAATGCTCGCCGTAAAGAAGGCACGAAGGTCGTGATCGGTGACAACCTCTCATCGCACTTTAGCGAAGAAGTGTTTAGCTTATGCAGAGAGCATAACATTCGCTTCGTTTGTCTGCCGGCTAACTCCACACACATTCTCCAGCCGTTAGACGTGGCATTCTTTGGACCTCTAAAAATGTCATGGCGATCTATTCTCGGTCAATGGAAAAGAAGTGCAAGACACCGTTCTTTAACCCTACCTAAACCAGAGTTCCCGGGTCTACTCAACAAGCTAATGGACTCCATTAAagGCAGAGCTGAATGCAATCTGTTGTCTGCGTTCAGGGCTACAGGAATTAACCCGTTAGACCCTAACGAAGCTCTGAAAAGGGTTCCCGGAGGATTGCCATCCCCGACTCGGGAGGAGGTTTTCGGGAGAGTTTCTGACACATTTGTTGAAAACCTGCAAGAATTGAGGTACGGGACCCGTGCTGCCGTTCAGCGTGGCCGTCGGCTGGCAGTGTCGCCCGATAAGAGCTGGGTGCAGCCAGGCCAGGGTGCGAGTGCGAATGAAGTCAGTTCAGACGACCCCGACTCTCCTGATACTGAAGAAGGAGGAGAATCTGAACAGGCTTCTGAGCCAAACGTAGCGTTAGAGGAAAAAGGGCGACCAGTCGTCGTCTACATTTGGTGA
- Protein Sequence
- MEKAVLAVQRGMSVRQAAYVYNVRRSTLNDRTLKPSLRPTAGRPIVLSHTVEEAIVAHVSTQAEWGFPLCKLDLQLIVRDYLNAQQIVEKRFKDNTPGNAWLRCFFKRHPELRVSKPKLLSSSRAKVNPDQLKKYFQNLKESLEGVPPENIYNYDETNLADDPSQKTVEVRRDQKYPTKVLTSSKTATSLMIAGTATGELLPPYVVYRSKELSETWVTGGPPGTRYNRSRSGWFDRVIFTDWFRNILVPNARRKEGTKVVIGDNLSSHFSEEVFSLCREHNIRFVCLPANSTHILQPLDVAFFGPLKMSWRSILGQWKRSARHRSLTLPKPEFPGLLNKLMDSIKGRAECNLLSAFRATGINPLDPNEALKRVPGGLPSPTREEVFGRVSDTFVENLQELRYGTRAAVQRGRRLAVSPDKSWVQPGQGASANEVSSDDPDSPDTEEGGESEQASEPNVALEEKGRPVVVYIW*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00731410; iTF_00731411; iTF_00731412;
- 90% Identity
- iTF_00731410; iTF_00731411; iTF_00731412;
- 80% Identity
- iTF_00731410; iTF_00731411; iTF_00731412;