Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010001145.1:269838-272841[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.6e-10 6.7e-07 29.7 0.0 10 35 2 26 1 34 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.6e-10	6.7e-07	29.7	0.0	10	35	2	26	1	34	0.90

Sequence Information

Coding Sequence: ATGCATGCTATTTGGAAGGGCATGTCTCGAAGGCAGGCAGCAAAAGAGTTTAACATACCACGATCAACTTTATTGGAGAAACTTGATGGTAAAAGACCTGTGGAATCATCTCCAGGTCCTAATCCATTTCTCACTAAGGCTGAAGAACAAACCCTTGAGTCATGGGCTGTAGACCTACATCGTCGAGGTTTTCCTCTGAAAACAGAGGATCTGAAAGACATGGCTCAAGCAGTTATTCAAAACAATCAGCGCCAAACGTCCTTTAAAAATGGTCGTCCTGGACGAAGCTGGATGCGTAACTTTCTTCTTCGTCATCCTAAAGTCTATGAAATAAGTGCTGATATGGCCCCAGGCCCTCGAAGAACTCGGACAGTTTCCTCACGTGAGGAAGTTTGGCAGTGGTGCCAGCATTTTCATCAATTCATGGCCTCGATAGGACAAGAGAGTGTTCTTGACTCCACTAATCGGATTTTTAATGTGGATCATGCTGCTTTTCTCTTTGATTCATCAACTGGTCTGTTGATAGAACAGGAACGTAGTGAACGTGGAGATGATAAATCTCATGACAATCCCGAGCAATCCAACAGCCTTGCTGCAGGAATGGAATATATCAGTGTAGTTGCTACATTTACCGCAGCTGGCAGAATGGCCCCCCTGATGTTTGTTCACCCCTCTCAAGAAATGCCTGAGGAATTCACTGGAACATTCCCCTCTAAATGGATTGAGACACATTCAGAGTCTGGTCTTTTGACAGGAAAATGTTTTCTTGACtacattattttatttaaaaagtgGCTTGAACAAGAAAACATACCCCTTCCTGTTGTACTGCTTGTTGATGGCAGAAGAAGTCGTCTTAATATTGATGTTACATGTTACTGCGAACAGCAGGGTATCATCTTGTATTGCATCTTTCCAACTCCAAGACCAGCAATCTTGGAAATTTTAAGTTCAACCATTCATGATTCATCCCAAAGTTTAAGTAAATTAAACTTTCCATCTTGTGTGTATGAGGCAATTCAAAGTCTTATAGGTTCTGATAAGTTAGATGGTTTAAGTAATGAAACATATGTCTTACCACATTTGCAGTCAATGCTGCAAACATTAGAAGAGGTGCGTGCTGAACCTTTGGACAACCTCGCACAACCAGCCTTCTCTCTTCTCCCAAATGACTGTAATTTTCTTGATCAAAGATTAGAAGGAGGACAGCATGATTCAGACTGTGAATTTGATATTGATCTAACTCCAGTTGAAGGAGAAATTGAAATAGAATTCCCTTGTTTGGATGATGTTGACCCATACACAATGGCACTTCACCCAGCTTTGTTGGTCAGTCCTGAGGTGCCAAAATATGTGGTCTTTCATGTTCCTCCCATGTCACCTAAAAAAGATGCAACTCCTGAACCTGCCAGCTCTTTAGGATGCCTGGTTGAGGCTGTATGCACTGAAGACAGGGTTGATCAGCCAGATGTAAACGCTCATCTTATTGTCAAGCCTCTTTCTAGCCCTTTACCTGAAACTGATAATGGAATTGCCAAAGTAGAATCTGAGATAAATGATGTACTTGGTACAATGTTATCCTTAGGGACTTCTCACCAAGTAGAATCTGAACAATTGTTGCCTTTGCAAAGCACCTCAGAGGAACCATTTCTTGGTTTCTCTGCAGAAGATAATTCTGCTATCAAACAGAATGTGCTTGATGCCCATGGCTGCTTACGTTTCATAGAGGGGATTATTGCAGAGAAAGGCCTTCTTCAAGACTTTAAGCTTGCAAGCAATGAACGCCAATGGAGTGGGGCACCAGAGGCTAAGTACTTGTTTGAAAGGGAGGCTGAAATTGCATACAACGTTTTAAGGGTTGGTTCTGAGCCTAAGCGAAGTCAAGTTGAGAAATACATATCCTGTGATAAAGAAGTGCTGAAAGTGAAATTTTGTGGGGAAGAGGCCCGCCAACTAAGAGTAGCTGTAAATGGCTTCATGGACCATCTAATACTTTGTACTGACACTATTGCTAAATTTGGACCACCCTCTGGAGACTCTTACAGTCACTTTTAA
Protein Sequence: MHAIWKGMSRRQAAKEFNIPRSTLLEKLDGKRPVESSPGPNPFLTKAEEQTLESWAVDLHRRGFPLKTEDLKDMAQAVIQNNQRQTSFKNGRPGRSWMRNFLLRHPKVYEISADMAPGPRRTRTVSSREEVWQWCQHFHQFMASIGQESVLDSTNRIFNVDHAAFLFDSSTGLLIEQERSERGDDKSHDNPEQSNSLAAGMEYISVVATFTAAGRMAPLMFVHPSQEMPEEFTGTFPSKWIETHSESGLLTGKCFLDYIILFKKWLEQENIPLPVVLLVDGRRSRLNIDVTCYCEQQGIILYCIFPTPRPAILEILSSTIHDSSQSLSKLNFPSCVYEAIQSLIGSDKLDGLSNETYVLPHLQSMLQTLEEVRAEPLDNLAQPAFSLLPNDCNFLDQRLEGGQHDSDCEFDIDLTPVEGEIEIEFPCLDDVDPYTMALHPALLVSPEVPKYVVFHVPPMSPKKDATPEPASSLGCLVEAVCTEDRVDQPDVNAHLIVKPLSSPLPETDNGIAKVESEINDVLGTMLSLGTSHQVESEQLLPLQSTSEEPFLGFSAEDNSAIKQNVLDAHGCLRFIEGIIAEKGLLQDFKLASNERQWSGAPEAKYLFEREAEIAYNVLRVGSEPKRSQVEKYISCDKEVLKVKFCGEEARQLRVAVNGFMDHLILCTDTIAKFGPPSGDSYSHF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -