Ffus026023.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- OsI_16049
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010001418.1:1268543-1269182[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-10 6.3e-07 29.8 0.0 4 40 10 46 9 50 0.90 2 2 6.3 6.3e+03 -2.2 0.0 1 10 81 90 81 90 0.86
Sequence Information
- Coding Sequence
- ATGGGCTATCGTACGTTTGCTAAACGTGATTTAGAGTTGGCGTTGAATGCCATAAGACATTGTGGTCACAGCATCCGCAATGCAGCAAAAACGTATGGTGTACCGTATGTGACTCTCAATCGCCACTTCAATGGTGCAAGTAAGTCGAATGTCCCCGGAAGAAAGCCAAAGCTACAGGAACATGAGTCTGAGATAAAAAATGCTGTCATTGTCATGGTGGAAATGGGACATGGTGCATCTAAAGAAGACATTTTGGACTTAGCAGTGCAGGTTGCTGACAAAGCTGATCGATCTCCATTCAAGGGAAAGAGTGAGAGGCCCAGCCAACGCTGCCCAAGTGAAGAGGAGAGACTTTCTAGTAGTGATGGTGAAAATAGTGAAAATGAAGACAACGAGAAATGTGGAGTTTGTCGGCAAAGCTTTCAGAATGACTTCAATGGTGAACAGTGGATACAATGCAAGATTTGCAAAACATGGTTCCACATGAGTTGTGTGCTTTTAACAGCTTATGATGCCAATTTCACATGCGAAGACTGTGTTCCCCTAACAGcttttaaaaacaaatga
- Protein Sequence
- MGYRTFAKRDLELALNAIRHCGHSIRNAAKTYGVPYVTLNRHFNGASKSNVPGRKPKLQEHESEIKNAVIVMVEMGHGASKEDILDLAVQVADKADRSPFKGKSERPSQRCPSEEERLSSSDGENSENEDNEKCGVCRQSFQNDFNGEQWIQCKICKTWFHMSCVLLTAYDANFTCEDCVPLTAFKNK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -