Ffus023388.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010001356.1:80159-81648[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.3e-09 8.4e-06 26.2 0.0 9 41 25 56 21 60 0.89 2 2 5.3e-05 0.053 14.0 0.0 1 40 170 209 170 213 0.91
Sequence Information
- Coding Sequence
- ATGATGTGGCCTGATGGAATGCAGTCACGGGGAAGAAGGCGTCCACATAATATTGCTCTCATTCAACTATGTCTGCGCGAAATTTCCAATGGAACATCTGTTAATGCTGTAGCCAAGACTTACGGCATTCCTCGAACCACTTTGCTCTATCACATGAAACGGCATGGTATATTATCCCCCATGGACCGACATGGCAGGAGACCGGACATGCACCAGCAGATGCTGCCCCACGGGCTGGCGCACGGGGgtcacggcggcggccacggcctgGGCGGCATGCACGGGcacgccggcctcggcggcgtccCCGGGGTGCCCGTCGAGAGCGTCCTCTCGACGCCCACCTTCTCGGCCGGCGACTTCGACCACGACCACCAGGCGGCCGGCCGTATGAACATGGGAATTGGCATGGGGATGATGGGgatgggcggcgtggcgggccccggggccgcgggcggaccCCTCGGCGGCAACCTGGGCAGCCCGGGCAAGGCGCGCATCCGCCGCTCCGAGGAGCAGCTGCGCCAGGCGGCCGACTGCGTCGTGGAGGGCTCCACCTTCCAGACGGTGTCGGACCGcttcggcatccctatctccacCATCCGGTTCTACATGGCCCGGCGGGGCATCCTACCGCAGCGCCGGCGGGGGAGGTCCtccgcggcgagcggcgcgggggcgggtgccCCCAACAACCAGAGCCTCAGCGCCGTCAACCCCTTTCACCAGATGCCATaa
- Protein Sequence
- MMWPDGMQSRGRRRPHNIALIQLCLREISNGTSVNAVAKTYGIPRTTLLYHMKRHGILSPMDRHGRRPDMHQQMLPHGLAHGGHGGGHGLGGMHGHAGLGGVPGVPVESVLSTPTFSAGDFDHDHQAAGRMNMGIGMGMMGMGGVAGPGAAGGPLGGNLGSPGKARIRRSEEQLRQAADCVVEGSTFQTVSDRFGIPISTIRFYMARRGILPQRRRGRSSAASGAGAGAPNNQSLSAVNPFHQMP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -