Ffus015417.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- ttk
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010001033.1:4470056-4472314[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-06 0.0017 18.8 0.1 1 40 259 298 259 301 0.88 2 4 2.9e-11 2.9e-08 34.1 0.1 3 38 311 345 309 351 0.91 3 4 0.0008 0.81 10.2 0.0 2 35 363 395 362 403 0.81 4 4 1.1e-11 1.1e-08 35.4 0.1 4 39 425 460 422 465 0.91
Sequence Information
- Coding Sequence
- ATGTCTGCAAAAAATATGAAACCTTCagataatttttgtttaaaatggaGCAACTATCAAGCTCATGTTTTAGGGGTTCTGGTGCAGTTGTTAGAGGCAGAGTCATTGGTGGATGTCACTTTGAGCACTGTAAACGGGGAGAAACTCTATGCTCACAAAATAGTCCTGTGTGCAGCGAGCTCATATTTTGAGGAAATTTTTTCTGACTCCAGTGATAGCCATCCAATTGTAATTTTAACTGACGTAGAATCGAATGTCCTTCGCAGTATTTTAGATTTTGTTTATCATGGTGAACTTAATGTTCAAGCATCACAGTTAGCAGAGCTCCTAGAGGTTGCCTCAACTTTACAAATTCGTGGATTGACGGAGGTGAGTGATCAGTTGCCTCTTATTGCTCCTGATATCACAAGTTCAAACTCAATCCATCCTGCTGATGCCTCTTGTCCACCTTGTGAAGAGGAAACAGAGATCTCACAAGTTGCTATTTCTGCAGAGGAGGTAGTCGCTTCACATTGTTCTGATGACATTACTCTAATTGCCAGTAATAATTCGTTGAatggaaatgaaaatattgaaTCTCAAGAGGAACAAACAAATAGCAATTCCAATTTCATGCAAGGAGCTCAAATTGAGGATGAAGTTTGTACTGTCTCAATATCCGATTCTCAAAATCAACCCTTCATTGGAAAGAACCAATATAAAAGCGTTGGTACAATTAATCGAGAACAAGATCGAAAGAAGAGAAAGCGACGTGAAATCTGCAGAAAGGAATACAGTGAAGAACAGCTTGCTGCTGCCTTGAAAGATTTGAGATCTGGACAATTGCTGGGAGATACTGCCATAGCTCATAACATTCCAAGATCTACTTTATATGTAAGAGCTAAAGCTGAAGGAATTCCTATTACTGTAACACGCCAAGAGCACTCAGGTGAAAATGTCAATGCAGCTGTGCAAGCAGTTCATGAAGGAGCAAGTCTTCAACAAGCAGCTGACATGTATCAAATTCCTAAAACAGTACTCTGGCGAAGAGTCAAAGCTGCTGGGGCATTCACTAACCGGGTCCAAACCAGACGACAATCCTATGGGCCTGAACACTGGCAAGCAGCTGTTCAGGCACTACAAAATGGTCAGAATCTCTCTAGAGTTTCAGCTCAGTTCCAGATTCCTAAAACAACTCTGTTCCGTGAAAAAGTACGACTAGTGGAAGCAGGAAAATTACCAATGACTGGTGTTAAGAAGAGGAGCCAACAAATTCAATTTTCAAAGCAATCCCAACTCAAGGAGGCAGTAGCTGCATGCAAAGAAGGTAGAATGTCACAGGCAGAGGCATCTATCACCTATCAGGTTCCTAAAACCACCATTTGGAGAAGATTGCACAAGACAAACAAGAAAAATGCAGATGAGAACATTGATTCTGTGAGATCTGTAGAAATCACTGATGCAACTGTTGAAGAACAGCCTGAAGGTGTCCAAGGAACACTCCAAGACCAGGCACAATTTACTTTCATCGagGGCAATAACCAACTTCCTGTCACCTACATTGTAGAGGAAGACTTCTCCACAGCTGCTCTTATTATTTAA
- Protein Sequence
- MSAKNMKPSDNFCLKWSNYQAHVLGVLVQLLEAESLVDVTLSTVNGEKLYAHKIVLCAASSYFEEIFSDSSDSHPIVILTDVESNVLRSILDFVYHGELNVQASQLAELLEVASTLQIRGLTEVSDQLPLIAPDITSSNSIHPADASCPPCEEETEISQVAISAEEVVASHCSDDITLIASNNSLNGNENIESQEEQTNSNSNFMQGAQIEDEVCTVSISDSQNQPFIGKNQYKSVGTINREQDRKKRKRREICRKEYSEEQLAAALKDLRSGQLLGDTAIAHNIPRSTLYVRAKAEGIPITVTRQEHSGENVNAAVQAVHEGASLQQAADMYQIPKTVLWRRVKAAGAFTNRVQTRRQSYGPEHWQAAVQALQNGQNLSRVSAQFQIPKTTLFREKVRLVEAGKLPMTGVKKRSQQIQFSKQSQLKEAVAACKEGRMSQAEASITYQVPKTTIWRRLHKTNKKNADENIDSVRSVEITDATVEEQPEGVQGTLQDQAQFTFIEGNNQLPVTYIVEEDFSTAALII*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00731884;
- 90% Identity
- iTF_00731884;
- 80% Identity
- iTF_00731884;