Basic Information

Insect: Frankliniella fusca
Gene Symbol: bab2
Assembly: GCA_029379305.1
Location: JAHWGI010000440.1:217126-221357[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.4e-11 1.4e-08 35.1 0.0 1 39 495 534 495 538 0.90

2 4 5.3e-13 5.4e-10 39.6 0.1 1 39 549 587 549 590 0.94

3 4 2.8e-18 2.9e-15 56.5 0.0 2 45 605 649 604 649 0.97

4 4 3.4e-19 3.4e-16 59.4 0.0 1 43 656 699 656 700 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.4e-11	1.4e-08	35.1	0.0	1	39	495	534	495	538	0.90
2	4	5.3e-13	5.4e-10	39.6	0.1	1	39	549	587	549	590	0.94
3	4	2.8e-18	2.9e-15	56.5	0.0	2	45	605	649	604	649	0.97
4	4	3.4e-19	3.4e-16	59.4	0.0	1	43	656	699	656	700	0.97

Sequence Information

Coding Sequence: ATGTGTGGACCAGCAGTGGACATCACCTCAGCCATGGCTGGACAGCACTATTGTTTACGATGGAACAATTATCAATCTAATATGACATCAGTTTTTCATCAATTACTTCAAACTGAGGCATTTGTTGATGTGACCCTCTCCTGTAATGAAGCTTCTTTGAAGGCACACAAAGTCGTACTCTCAGCCTGTTCATCATATTTTCAAAAGTTACTTTTAGAAAATCCATGTAAACATCCAACAATCATAATGCCTCCAGATGTTTGTTTTAATGATCTTAAATTTATCATTGAATTTGTGTATAGAGGAGAAATAGATGTGTCACAAGCTGAGTTACAGAGTCTTCTCAAAACAGCTGATCAGTTGAAGATAAAAGGGCTATGTGAACTTCCTGAGGGGAAAGATGGAGGTGTAGTTATTCCCTCCGCCCAAGTAACACCCCTACCACCAAATGCTCGAAGACGTACCATAACAAAATTTCGACGTATTGCTGGGCACAAAGGACGGCGGTTTGAACCCAGAGGTCGACCACCTATGTATAGAGGTGCCACCACGGTGAAACAAGAACAACCACAACCTTCACCTCAGCAACACCAACAGcaccatcaacaacaacaacaacagcaacaccaACAACAGCAAGTCctacaacagcagcaacaaatgCAACATCAACAGCATCAGCAACATCAAATGCATCCCCAATCTCACCTCCAACCAAGTGCAGGTCACATACAGGTATCTAATGGAATGACTGTGAACGTTGGAATGACTGTGGCTACATCAACAGATGAAGAGCGTAGTGGTGGGGGTCATATGGCCACAGGCGATATACCTGTTGTAATTCTTGAAAGTCGCCCCCATTCTCATGGACATACTGGCCAGCCTCAAATGCATCCACACCTTCAGCACCATCAATTAACTACCGCAGTCTCCCCAGTCCTACTATCTCACCAAGGTCACTTACAACAGCATGGTCTTTCACTTCCACCTCCTCAGCCTCAGCAAATGGAGCAGCATAATTCACATTCAGTCCATTCAGGCCACTCAGCTCACTCTGCTCATAGCAATAGTGCTAGCGATGTTGAAATGCCCCCGGAAGTCactcctcctgctccctctGCAACTCCTGTTCCTCTCATGGCCATCCATGAAGATTCTATTCCAAGAAGTAGAGATATGGCAGTGGATACATCAGGAATAACTCATAGTACTGAAGATGAAAATGTGAAGGTAAAGTTTGAAACCCTTCGAGCCATGGAGCAAGGTGATGCCATAAACATGGATAGTCACATGACTGATAGAcaacagcagcaacagcaaaatATGGGTGAGGATGATCATACAATGCACACCATGATGATTACTCCTGAGCTTCTTGGTCTAATACCTTCGTCTTCAGGACACTCGACCGATTCCACAGCTCCCTCTCCAGCTGATGGCCAACCAGAGCAACCTAAAGGTCCTGGTGGGCCAAAGACATGGACACAAGAAGATATGGATGCAGCTTTAGATGCTTTACGAACTCAAAACATTTCACTAACAAAAGCAGCCACCATGTTTGGTATACCCTCTACTACCTTGTGGCAAAGAGCACATCGTCTTGGGATTGACACCCCAAAGAAAGAAGGTCCCAACAAGTCTTGGTCAGAAGATAATTTAAATAATGCCCTTGATGCTCTCAGAAGTGGATCTATTTCTGCTAACAAAGCTAGTAAAGCTTATGGAATTCCTAGCAGCACTCTTTATAAAATTGCGCGAAGAGAAGGCATAAGATTAGCTGCTCCATTTAATGCTGCTCCAACAACTTGGAATCCTGATGATTTGGAAAGAGCTCTTGAATCTATCAGATCAGGACAAACCTCTGTTCAAAGAGCAGCTGCTGAATTTGGTATTCCTACTGGTACCTTGTATGGACGCTGCAAGCGGGAGGGGATTGAGCTCTCCAGAAGTACACCCACTCCGTGGTCAGAAGATGCCATGTTGGAAGCTTTAGAGTCAGTAAGAGTTGGTCAGATGAGCATCAATCAGGCAGCTATCCATTACAACTTACCATACTCTTCACTCTATGGACGGTTTAAGCGTGGGAAGTATGAGGCTGATCATCCGAGCGGAGACGAATCAATGGATGCCCCTGTTTCTCCTAATATTCAACCTCAAATCATGGTTTTACCTTACTCTGTTAGTGTCTCGCAACATGCTCAACAACAACATCAGCAGCAGACAGCCCAGCAACAAGCACAGGCTGCAGCAGCCCAGCAACAAGCTCAACAGCAGGCAGCCCAAGCTCAGCAGGCTCAGCAACAAGCACAGCAGGCTGCTGCAGCTCAGCAAGCTGCACAGCAGGCTGCACAACAACAAGCCCAGCAGGCAGCTCAGCAGGCTGCACAGCAACAGGCTGCTCAAGCAGCAGCTCAGgctcagcaacagcagcaacaggcTGCAGCCCAACAAGCTCAAGCAGCAGCTCACCAAATTCACCAGCAACAGCAAGCGGCAGCCCAGGCTGCTCAAGCTGCCCAGGCTCAGCACTCTATGGGACAGTATCAGCCTCACAGTACTAGTTGA
Protein Sequence: MCGPAVDITSAMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLSCNEASLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPPDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCELPEGKDGGVVIPSAQVTPLPPNARRRTITKFRRIAGHKGRRFEPRGRPPMYRGATTVKQEQPQPSPQQHQQHHQQQQQQQHQQQQVLQQQQQMQHQQHQQHQMHPQSHLQPSAGHIQVSNGMTVNVGMTVATSTDEERSGGGHMATGDIPVVILESRPHSHGHTGQPQMHPHLQHHQLTTAVSPVLLSHQGHLQQHGLSLPPPQPQQMEQHNSHSVHSGHSAHSAHSNSASDVEMPPEVTPPAPSATPVPLMAIHEDSIPRSRDMAVDTSGITHSTEDENVKVKFETLRAMEQGDAINMDSHMTDRQQQQQQNMGEDDHTMHTMMITPELLGLIPSSSGHSTDSTAPSPADGQPEQPKGPGGPKTWTQEDMDAALDALRTQNISLTKAATMFGIPSTTLWQRAHRLGIDTPKKEGPNKSWSEDNLNNALDALRSGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWNPDDLERALESIRSGQTSVQRAAAEFGIPTGTLYGRCKREGIELSRSTPTPWSEDAMLEALESVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEADHPSGDESMDAPVSPNIQPQIMVLPYSVSVSQHAQQQHQQQTAQQQAQAAAAQQQAQQQAAQAQQAQQQAQQAAAAQQAAQQAAQQQAQQAAQQAAQQQAAQAAAQAQQQQQQAAAQQAQAAAHQIHQQQQAAAQAAQAAQAQHSMGQYQPHSTS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733267;
90% Identity: iTF_00733267;
80% Identity: iTF_00731882;