Ffus004360.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- retn
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000219.1:2320244-2327135[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-17 1.7e-13 51.5 0.1 29 89 4 62 1 62 0.93 2 2 1 2.9e+03 -0.5 0.0 15 45 209 243 184 247 0.63
Sequence Information
- Coding Sequence
- ATGGCCAAGAGCGTGCTGGACCTGTACGAGCTGTACAAGCTGGTGATAGCGCGCGGCGGCCTCGTGGACGTCATCAACAAGAAGCTCTGGCAGGAGATCATAAAGGGCCTGCACCTGCCCTCCTCCATCACCTCGGCCGCCTTCACCTTACGCACGCAGTACATGAAGTACCTCTACCCGTACGAGTGCGAGAAGCGGCGCCTGTCGACGCCGGCCGAGCTGCAGGCGGCCATCGACGGTAACAGGCGCGAGGGTCGGCGCTCGTCGTACGGCACGTACGCGGACATGGTgcagcgcgcgcccgggggcggcggcggcggcggcggcggcgggggcggcctggtCGGCGGCCTCCCCGGCGGCGTCCAGCTCtcggcgcaccccgcccacccggcgcaccccgcgcaccccgcccacccctcgcAGATGTCCCCCCTCAGCCTGGTGACGCAGAGCGGCCGCCTGCTCAACGGCAACGGCCACTACAACCACAACAACCACCACCAGCTGCTGCCCCCGCCAGGAGCAGGTCACACCCCCGCCGAGCTGGAGAACCGCATGGCCGAGTACATGAAGCTCATCAGCAAGGAGCTGCGCAACTCGGCCGGCACGCCACCCCTCTCTAGACAAGGCTCGCCGCCCACCTCGCCGCGGGAGGCGACGATGAACGCGCTGGAGATGTCGCGGCTCACGCTGTGGAACCTGTACAACAACAACAcgctgggcggcgtggcggcgggcgcgctgggctcgctgggcgcggcggcgggcgcgctcggctcgctgggcgggctggcgggcgggctggccggccccggggcgctggcggcccaggcgcaggcccaggcgcaggctcaggcgcaggccgccgcggccgcggccgccgccgccgcgcagcagcaggccgagcaggccgagcagcaggccaaCGAGCACCCCGCGCACCCGCACCAGCACCCGCACCAGCagccggccgagccgcagcgCGAGGCGCTCAACCTGGGcgtgcagcgccagcagcagcgggagcgggagcagcgggatcgggagcgggagcgggagcgggagcgggagagggagcgggagcgggcgcagcgggagcgggacggccagagggaggccaccATCAAGCGGGAGCCCGAGGAGGCCTTCATGCCCGCCGCCAAGAGGCCCGCCCTGCAGGACCGGGAGCGGGATCGGGACCGCGAGCGCGACGAGGACGCGCACAGCCCCAGCCCCGTCAAGACCGCCGGGACGCACATCAAAATCAACAGCAGAGGCGACGGGCGGCCAGGGTCCGACAACTCCCTCGTTGTGAGCATGGACATCAACGGCATTATGTACCAGGGGGTGCTCTTTGCCCAGCAAGCGGTTCCACGCACGAGCCGCGTCTCATAG
- Protein Sequence
- MAKSVLDLYELYKLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYADMVQRAPGGGGGGGGGGGGLVGGLPGGVQLSAHPAHPAHPAHPAHPSQMSPLSLVTQSGRLLNGNGHYNHNNHHQLLPPPGAGHTPAELENRMAEYMKLISKELRNSAGTPPLSRQGSPPTSPREATMNALEMSRLTLWNLYNNNTLGGVAAGALGSLGAAAGALGSLGGLAGGLAGPGALAAQAQAQAQAQAQAAAAAAAAAAQQQAEQAEQQANEHPAHPHQHPHQQPAEPQREALNLGVQRQQQREREQRDRERERERERERERERAQRERDGQREATIKREPEEAFMPAAKRPALQDRERDRDRERDEDAHSPSPVKTAGTHIKINSRGDGRPGSDNSLVVSMDINGIMYQGVLFAQQAVPRTSRVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -