Basic Information

Insect: Formica selysi
Gene Symbol: -
Assembly: GCA_009859135.1
Location: CM020809.1:1397997-1408769[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9e-06 0.0015 19.7 2.0 1 23 169 191 169 191 0.98

2 8 0.00038 0.063 14.6 0.7 1 23 224 247 224 247 0.93

3 8 6.6e-05 0.011 17.0 2.6 1 23 347 369 347 369 0.97

4 8 8.9e-06 0.0015 19.7 0.1 1 23 375 397 375 397 0.98

5 8 1.6e-06 0.00026 22.0 1.7 1 23 403 425 403 425 0.98

6 8 3.4e-07 5.6e-05 24.2 1.9 1 23 431 453 431 453 0.99

7 8 3.5e-06 0.00057 21.0 1.0 1 23 459 481 459 481 0.98

8 8 3.4e-05 0.0056 17.9 0.6 1 23 487 509 487 509 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9e-06	0.0015	19.7	2.0	1	23	169	191	169	191	0.98
2	8	0.00038	0.063	14.6	0.7	1	23	224	247	224	247	0.93
3	8	6.6e-05	0.011	17.0	2.6	1	23	347	369	347	369	0.97
4	8	8.9e-06	0.0015	19.7	0.1	1	23	375	397	375	397	0.98
5	8	1.6e-06	0.00026	22.0	1.7	1	23	403	425	403	425	0.98
6	8	3.4e-07	5.6e-05	24.2	1.9	1	23	431	453	431	453	0.99
7	8	3.5e-06	0.00057	21.0	1.0	1	23	459	481	459	481	0.98
8	8	3.4e-05	0.0056	17.9	0.6	1	23	487	509	487	509	0.97

Sequence Information

Coding Sequence: ATGGCCCTAGAATCAAATGGCAACAACGTGGTGTGGTTGAACACAACCCGTCCTGATCAAATACAGCAGAGTCAACCGATCGAGCAGCCATTGAAGTGTTCCATGTTTACTCAAACGGAGCAGACTAACAGTTTTACTCAGACAGAGCAGAGCAATTCGAGTTACGGAGATCAGAGACAGCAAACAGCAATGTTTGACCCACAACAGATCCAGCAACAGCAAGCTGCTGCGCAGGGTCAACAGTCGCAGCAGCAGCAGTCTCAGCAGATGTATGTCACTGACAAGAAGGAGGACAAGTCTCAGCAGCAACAACAGTCCACCACTTCCGAGTTCCCTTCCTCTTTCTACTACAACGTCAACATGCTGCAGAAGGTTCAAACAAACGCGGTGAGCACAATCAGTGCAATCGCCGACGACAAGGGTTGTTATCGTTTCGATGTGCAACCTGTTGGTTATAACACATTACTGAATCAGATGAGCATTGCCGCTGCCACCAATGCGACCTTCAAGTGTGACATTTGCGGACTGGTCTTTGGCCATGTGAGCCTGCTGCAACATCACAAACGGATTCACAACGCGACACCCAACAGTAATCTGCCGCAACAGCCACAGCAGATTGTAGTACAAGGACCGACAACAGTGACTGTCGCCACCACGCCAGAAAGACCATACACCTGTGACACTTGTGGAGCGTGTTTTGCATTACCGGGAGAATTAAAAAGTCACAAAACAAACATGCATCAGAAACCTAAGGTGCAAATCTGTGAAGATTGTGGCAGTGAGGACCCATGCGAACATCATCCaactaaagttaaaaagaCTATCAAACCTGGTCATCATCCTGTGAAACGGAGGGGTGTTACCAGTGTCACCAAGTGTCACAAGTGCAATGGCACcgggattatttttattgGTAAACACGACGAAAAACTAGATTCCGGAATCAGTTCCCTCGCAAAGTGTGGCGGCTGCAAGGCTACAGGCCGTATCGTCATAGGAAGTGGCAAACAAAACAGTCAGAATCAGGCGGAGAAACCATTTCACTGTAACGTTTGTGACGGTACATTTTCTCGATATTCTTCGCTTTGGTCCCACAAGAGACTTCACTCGGGAGACAAACCATTTAAATGTGAAGTGTGTGGTTTAGCATTTGCAAAGGCTgcctatttaaaaaatcacgGACGAGTTCATACTGGCGAGAAACCGTTCAAATGCAGCGTTTGCGGTATGCAATTTTCGCAAAGTCCACATTTGAAGAATCACGAGCGAATTCATTCCGGCGAACGACCGTATCAGTGTGAGGTTTGCGAGAAAACATTCGCCAGACACTCGACGCTCTGGAATCATAGAAGGATCCACACTGGCGAAAAGCCGTACAGGTGTAACATTTGCGGTTCCGCTTTCAATCAAGCCACACACCTCAAGAATCACGCAAAAGTTCATACCGGCGAAAAGCCACACAGGTGTGATATATGCGAGATCGGTTTTTCCGATCGTTTTGCGCTCAAGCGTCACCGTGCAATTCATGAAAAGTACGGTCAGACGGCGCGAAACCAGAACGCTAATAATCCGGCTAACGCACAGCAAGCCAACGCAAGTAGTCAACAACAACAgccgcagcagcagcaacagccgCAGCAGGCGCAACAAGGCCAAGTCGTGGTTGTGAACGCGACCACTCCCGTCACCGTCAGCCAAGGGCAAGGTCAAGTGATGCTCGACGAGGTCTACAAGTGTCAGGTGGCCTTCCCAGAGCCTAAATGA
Protein Sequence: MALESNGNNVVWLNTTRPDQIQQSQPIEQPLKCSMFTQTEQTNSFTQTEQSNSSYGDQRQQTAMFDPQQIQQQQAAAQGQQSQQQQSQQMYVTDKKEDKSQQQQQSTTSEFPSSFYYNVNMLQKVQTNAVSTISAIADDKGCYRFDVQPVGYNTLLNQMSIAAATNATFKCDICGLVFGHVSLLQHHKRIHNATPNSNLPQQPQQIVVQGPTTVTVATTPERPYTCDTCGACFALPGELKSHKTNMHQKPKVQICEDCGSEDPCEHHPTKVKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKHDEKLDSGISSLAKCGGCKATGRIVIGSGKQNSQNQAEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCSVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTARNQNANNPANAQQANASSQQQQPQQQQQPQQAQQGQVVVVNATTPVTVSQGQGQVMLDEVYKCQVAFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00292456;
90% Identity: iTF_01520492;
80% Identity: -