Basic Information

Insect: Formica selysi
Gene Symbol: -
Assembly: GCA_009859135.1
Location: CM020805.1:8707889-8712553[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.2 1e+03 1.3 0.5 1 19 354 372 354 379 0.66

2 11 9.8e-07 0.00016 22.7 2.0 2 23 447 468 446 468 0.97

3 11 2e-05 0.0033 18.6 0.4 1 23 474 496 474 496 0.98

4 11 0.00035 0.058 14.7 2.4 1 23 502 524 502 524 0.98

5 11 2e-05 0.0034 18.6 1.0 1 23 530 552 530 552 0.98

6 11 0.00025 0.041 15.2 1.3 1 23 558 580 558 580 0.98

7 11 3.6e-07 5.9e-05 24.1 0.4 1 23 588 610 588 610 0.98

8 11 0.0042 0.69 11.3 0.2 1 23 616 638 616 638 0.94

9 11 5.2e-06 0.00085 20.4 1.7 1 23 644 666 644 666 0.98

10 11 6.8e-05 0.011 16.9 0.9 1 23 672 694 672 694 0.98

11 11 0.023 3.8 9.0 5.2 1 23 700 722 700 723 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.2	1e+03	1.3	0.5	1	19	354	372	354	379	0.66
2	11	9.8e-07	0.00016	22.7	2.0	2	23	447	468	446	468	0.97
3	11	2e-05	0.0033	18.6	0.4	1	23	474	496	474	496	0.98
4	11	0.00035	0.058	14.7	2.4	1	23	502	524	502	524	0.98
5	11	2e-05	0.0034	18.6	1.0	1	23	530	552	530	552	0.98
6	11	0.00025	0.041	15.2	1.3	1	23	558	580	558	580	0.98
7	11	3.6e-07	5.9e-05	24.1	0.4	1	23	588	610	588	610	0.98
8	11	0.0042	0.69	11.3	0.2	1	23	616	638	616	638	0.94
9	11	5.2e-06	0.00085	20.4	1.7	1	23	644	666	644	666	0.98
10	11	6.8e-05	0.011	16.9	0.9	1	23	672	694	672	694	0.98
11	11	0.023	3.8	9.0	5.2	1	23	700	722	700	723	0.95

Sequence Information

Coding Sequence: ATGGCCGTCGTCGAGGAGTTCGATTATTTGTGCCGTTTGTGCGCGACCAAAACCGGCATCCTGATGGGGCTGCCGATTTTCGAGGCCGGCGAACAAATGCGCAACATCGACAAGAAAATAGCAGCTTGTCTGCCGGTTCAGGTATCATTGACAGATCAGTTACCCAAAGTGGTTTGCGAAGAATGTGCATTTAAATTAGATCAGCTGTTTGATTTTCGTGAAAAATGCCTACATACAGAAGGAATGTTTATGGAGATGttgaaagaaattaaagaGGAAGTTGTGCATATATCAGAGCACGAGTTGGCAAGAGTGAATAATATGGGCACTGTTCGGAGAAACTTGAACAACATACAGATTAATAATGAAGATGTACAAAGTCATTCAGCTATATCTCATGAGACTGTGGAATCTACCATGCATACAATGCAAGTAATAGATGAAATGGATTTAGCTGGTGGCGAACAAGTGGTTACTCAGGAAGAGATAGGGCAGCAAGACGCGGACATCCAAGTGGCAGGCATTGACTGTTTAGATGGCGATACCGTGAGAATGGTCGATGAACATATACGAGAAgTTTCAAACCATCAGATTGCAATGCATTTGGAGAGTGATATGACCGTAGTGGGAAATTTGGATGGTCATTTGAGTCAGTTAGGGATTAATTATGTTACTTCTATCAATCCTGAAGATCAAAGCCAAGAGCAGATAGTGCATTATtgtgaaaatgtaaaatatgagGCAGGGCCAATAAAACAGGAATATCGTACATTACAAAATAGATTAACTACAGAAGATTCGCAACATGTACTTGAAAATAATGTATCTACGGATAATTTTGGCTCCTCTCATGCTGACGCAGAAGCCGAGATAGAAGAATCTTGTATGAACGAAAATGGAATTCGCGAACATGTCGATTCAGTAAATGCTTTACCGTCTACAAGTCAGATAAATGACATATCTTGCGAAATAATGGTTAAATACACGAAGGAATCGAAGCACACATTGCTAGAATCTGCGCTCAATAATCCTACCATGGACGAAACTGGTTCGCATTGGTACATGTGCCCGTTCTGCAATGAGGCAGCTTTAGAAACGAGCAGTCTGGCGGCGCATTTCGAACAACATTTCTGTCGCTGTTGTTGCGATTCATACTTTACCAGCGTcgagatgttaaatttacataaGGAGCagtgtattgtatataaagataaactagtcgataagaaaaagaaagatatacaaTTGAACGTAGCGACACCGTCGCAAGAGAGAAATGGCAATCAAGAAGAGCAAAAGAAACAATCACCAACAGTGAAAAGGAAATGGACCGCGAAGACCTGCGACGAATGCGGCAAGCAGTACAGAACGAATTACAAACTGCAAGAGCACATGCGCAAGCATACAGGCGAGAAACCGTTTCAATGTACGACATGCGAGAAGGCATTTCGCAGCAAGATCGGTCTCGCGCAACACACGGCCACGCACACGGGTCAATTCGACTACAATTGTTCTACCTGCGGCAAGGGATTCCAGTGTAAGAGCTATCTCATTGTACATCAAAGAGTGCACTCGGACGAAAAGCCATATCCGTGCAATACATGCGGTCAGaacttcaaaacgaagcaatcATTGTTGGATCACGAGAACCGTCATCTCGGCGTGAAGCCGTACATGTGCGAAATCTGCGGCCGTGGTTTCATCACTAAGGGCCTCTGCAAGAGTCATCAAAAGATACATTCGGGTACGGACAATCGCCAATACCCGTGTGCAGTGTGTAACAAAATGTTTGTCAGCAAGAGTTACCTCAACACACATCTACGCATTCACACGGGCGAGAAGCCGTATCTGTGCGAAGTATGTGGAAAGGGATTCCTGACGCGAGTTGATCTCAAGATCCATTCGACCATGCATACCGGCGAGAAGAGCTTCAAATGCGAAATATGCGGGAAGGTGTTTGCCCGACGTGCGGCGCTACGCTGTCATCGACGATCGCACACGGGCGAGCGTCCTTACAGATGCGACGTGTGCAATAAAACATTCACGCAGTTCAGTCCGATGGCCATTCACAAGCGTTTGCACACCGGTGAACGACCGTACAAGTGCGACGCGTGCGGCAAAGGCTTTGTGTCCAGGTCAACCATGATGTGCCACAGAAAGAAGCATCACGATACAACGACCGCCGTGCAAAAGGATGCGCCTACAAACGAGGACGGGGAGATAAAAATCATCCTCTCGTCCGATATCGTGGTCAGAGATTCACACGACGGAATTCAAATAACGTAG
Protein Sequence: MAVVEEFDYLCRLCATKTGILMGLPIFEAGEQMRNIDKKIAACLPVQVSLTDQLPKVVCEECAFKLDQLFDFREKCLHTEGMFMEMLKEIKEEVVHISEHELARVNNMGTVRRNLNNIQINNEDVQSHSAISHETVESTMHTMQVIDEMDLAGGEQVVTQEEIGQQDADIQVAGIDCLDGDTVRMVDEHIREVSNHQIAMHLESDMTVVGNLDGHLSQLGINYVTSINPEDQSQEQIVHYCENVKYEAGPIKQEYRTLQNRLTTEDSQHVLENNVSTDNFGSSHADAEAEIEESCMNENGIREHVDSVNALPSTSQINDISCEIMVKYTKESKHTLLESALNNPTMDETGSHWYMCPFCNEAALETSSLAAHFEQHFCRCCCDSYFTSVEMLNLHKEQCIVYKDKLVDKKKKDIQLNVATPSQERNGNQEEQKKQSPTVKRKWTAKTCDECGKQYRTNYKLQEHMRKHTGEKPFQCTTCEKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDEKPYPCNTCGQNFKTKQSLLDHENRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGTDNRQYPCAVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCEICGKVFARRAALRCHRRSHTGERPYRCDVCNKTFTQFSPMAIHKRLHTGERPYKCDACGKGFVSRSTMMCHRKKHHDTTTAVQKDAPTNEDGEIKIILSSDIVVRDSHDGIQIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01087395;
90% Identity: iTF_00280136;
80% Identity: iTF_00729536;