Fsel030538.1
Basic Information
- Insect
- Formica selysi
- Gene Symbol
- ZFX
- Assembly
- GCA_009859135.1
- Location
- CM020820.1:3467350-3471374[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.78 1.3e+02 4.1 3.8 1 23 586 609 586 609 0.81 2 14 0.00034 0.057 14.7 1.9 2 23 697 719 696 719 0.96 3 14 0.0069 1.1 10.6 0.1 2 23 732 753 732 753 0.98 4 14 1.1e-05 0.0019 19.3 2.3 2 23 756 777 755 777 0.97 5 14 0.008 1.3 10.4 0.3 1 23 783 805 783 805 0.95 6 14 2.3e-05 0.0038 18.4 4.4 2 23 812 833 811 834 0.95 7 14 0.071 12 7.4 3.7 5 23 847 865 846 865 0.97 8 14 1.4e-05 0.0024 19.0 1.5 3 23 872 893 871 893 0.97 9 14 0.0065 1.1 10.7 0.3 2 23 909 929 908 929 0.97 10 14 4.3e-05 0.0072 17.5 0.7 1 20 935 954 935 957 0.92 11 14 5.4e-05 0.0089 17.2 2.7 1 23 965 987 965 987 0.99 12 14 0.0015 0.25 12.7 3.2 1 23 993 1015 993 1015 0.97 13 14 2.7e-06 0.00045 21.3 3.9 1 23 1021 1043 1021 1043 0.99 14 14 0.00094 0.16 13.3 6.3 1 23 1049 1071 1049 1072 0.96
Sequence Information
- Coding Sequence
- ATGAGCGACGAAAGACCGGCAAGCCGCAACAGCAGTGTTAGTGTCAGCAATAACGTTCCATCCCCGCGGAATTCAATAACGATTCCAGACGCATTGAAAGACTCTATTCAACCTGAACTTAATTCGGTGGAAAAGCTAGAGAATTTGATAAGCATAATGGAAACGGAGCTTAATAGCGCTTCGCTTCAAACAGAAAATAGTTCATCAAATGATCAGGATAGATTAATAGATACGAGAGAGAAATCTGATAGGGAGGAGACCGTGATTCACGATACCGTAGTGACAATTCTAGGCCCTCACGACAAGGATCACATATTGCCTGATATAGAAGAAGATAACAATACATGGTGCCCGAACGATTATGTAGATAACGAACTGAGAACGCTAGAAAAAACTTGCCGGTATTTGTCATACAATACAGAGTGCCCGAAAATAGATGACGGTTTGAAAATgttagagaaaaatttgtataagtATAAGCATAGTTTTTCAGCACCCCCGTCTCCTGTCACGAGGAAGAAGTGCCGCAAGACCGTGGCGCGTCGTTACAGCGCGCGATCGGAGCTCGGATCATGCGAAAATCTCAGCCCGTATCATCATCGTGGTGGCTTTGACGACGCGGCGGCCATGCAGGACGAGGACGaagacgaggacgacgacgacgatgtgGATATCGACGAGGACGAGAAGATCGATGAGGAGGATAATTTCGACGAGGCGGACATGGAGATTGAGGAGATTCCCAGTCCGCATACGCCTTTCGCGGAATGCGGCGTCAGATCGCACACACCATTGTCCACGATTAGCGGTATTTCCGTGTTAAGAGTTAGGAAAGATCTCAGCAAACCATGTTCACCCACATCCATACATTCGTTTCATCATGTGGACAGTGATAGCGTAAGCCACGACGAGGACAGTAATGCtgtagataataatattgtagatAATATTGCAGAGAAAGATCCGATTGACTGTTCTCAAATCGAAGAGAAGATTAAGACTGATCATCAGCATCAGGAGGCGCGCGCGATAGTGTgcgaaaataatgaaaaagttCAGGAATCGAGTAGTAGTAATAGTTATACATACCAGCAGTCAGTGATAACTGAACACGTTAGTTCATTCCCTGTGATGCACTCGCAGCCACCCGTCTTGATGCAAGAGTCATATTCCGCGACGAGTAAGACGCAAAATCTCTTAAACTTGTCGGAATCGATTAATCCTACAACCAGCACTGAATCCAAGAGCTTTCATTCTACCAAATCTACGTTGATGCCGAAGCAATCGATGGAATTGCTCAACATAAATGAGGATGCTCATGCCGGACCGATAAACGTCTTTGAATTTGAAGGACTACAAATATTAGTTCCTAGTACATTTATAAGCGATTCGTCTCAGAAAGCGGTTAGTGCGACCAGTCAGCAGTCCATGGCAAGTAGCGAGGGTGCAATAGGTATCGATGAGGAAGTCAAGAGTATTAATATGCGTGCCGATGAGACCATGCCGCCTAGAGGTGAACTGTCCGAACAAGAGAGCAATGGATGCACAGAGCCGTCTGCATGGCAGCTGTACATGGGTCAAGAATCTTCGCGCATGTCCACCTCTTACGATCTGTTGGCACGAGAAAGCTGGGAGGAATCAGAAGGATCTGACAACGAGATTAGTGGCCCGTTGTTGGATAGTAGATCGTTGGCCACGCACTTCACTTCGAGTCTGTTTCTGGATCGAGACCGGAAGACACCGACCAAACGGACGTTCAAGTGTTCTCACTGTAACGAGGTATTCGATTGTCCAAAAGAGCGCAGAGTTCATAGTACAACAGTACATAAGGAGGCAGTGCCCAGTAGCAGCAGAGATCAATTGGATCAGCCGGAGATGAAGGACATCAAGTTGCTGGACAATCGTGTGAATGTGTTCGACGATATATTTGTGCCGGGTCTGCACATGCAACAGATGTACCATCATCAACAGCCGCTCCTGCATCAGCTACAGCCACCACCGTCGCAGCCTGGAGCGGATGGTTTGACCAAGGCTGAAGGCGATCAAAAGATTGGCGAGAATCTGGTGATACCGTCGAGCATCGAGGTGACTTGCGCGATATGCAGCCAACGATTTAGCAGTGAAAAATCTCTACAGATACATCATCGGCGTATGCATTTAGCTGAGGTAAACAAACGCATACGCGAGAACGCCAAGTGCCAGATATGCAACGAGGAGTTCCCGTCAGTGTTATTGTTCAACGCTCACCTGAAGATACACCCGTTGGAATGCGGACAGTGCGGTAAGTATTTTTACCGGAAGCAAAATTTCAAGCTGCATATGAAACGGCACTTGGGCATCAAACCATTTCCGTGCACTGTGTGCGACAAGGCGTTCCTCACCAAGCAAAAACTGGACGAACATACCAACGGCCACACTGGCAACGCGCCCGTCAAATGTAGCTTGTGCAACGAGACTTTCCGCAGGTATTCGAATTTGACCCAGCACAAAAACCGGCATCACCTCAACATCAAGAAAAAACTCAAAGACTATATATGCCACTGCGGCGAAGTGTTTCACACGAAGAAGAAGCTCGCCTGGCACAAAGAGACGCACGACGAGAAACCCAAAGCATGCACGTATTGCAATGAGCGATTCATCCACATGGCCAGTCTGACGCGTCATATGCGTCGTGCCCACAATCGCCGATTCGTTCCTGATGCGCAGCGCGAAAGCGAGAACGTCGAGTGTCCTATTTGCAAGTGTATCTATTTACGATCGTCGTTGGCGGTGCACATGCGCGTGCACAACGGCGAACGGCCGTACGAGTGTCAGGTATGCTCCAAGGCGTTCAGCACCAAGTGGAATCTACAGTTGCACAAGTGGACGCATGCGGCACGCAGCACCAAGCCGTTCAAGTGTAATCAGTGCAGCGCGGCCTTTTATCGTCACAGCGACTACACGGCGCACATGAATTCCCACCGTAACGTGCGTCCGTACACGTGCAACTATTGCGGCGCGCAGTTCATCCGCAAGTACAACTGTCTGCGACATGTCAAGGAGCACGAGGAAAACAAGGCGTACACGTGCGACGTATGCAACAAGACCTTCCATCGCTCCTACTATCTCAAGGAGCATCTGCGGGTGCACTCGGGCGCGCGACCGTACACGTGTCACATTTGCGGCAAGTCCAGCGGCACCAAGTCCAATCACAACAAGCACGTGCGAATCCATCACGCGCGCGAGCCTGTAAATaccgaaaattaa
- Protein Sequence
- MSDERPASRNSSVSVSNNVPSPRNSITIPDALKDSIQPELNSVEKLENLISIMETELNSASLQTENSSSNDQDRLIDTREKSDREETVIHDTVVTILGPHDKDHILPDIEEDNNTWCPNDYVDNELRTLEKTCRYLSYNTECPKIDDGLKMLEKNLYKYKHSFSAPPSPVTRKKCRKTVARRYSARSELGSCENLSPYHHRGGFDDAAAMQDEDEDEDDDDDVDIDEDEKIDEEDNFDEADMEIEEIPSPHTPFAECGVRSHTPLSTISGISVLRVRKDLSKPCSPTSIHSFHHVDSDSVSHDEDSNAVDNNIVDNIAEKDPIDCSQIEEKIKTDHQHQEARAIVCENNEKVQESSSSNSYTYQQSVITEHVSSFPVMHSQPPVLMQESYSATSKTQNLLNLSESINPTTSTESKSFHSTKSTLMPKQSMELLNINEDAHAGPINVFEFEGLQILVPSTFISDSSQKAVSATSQQSMASSEGAIGIDEEVKSINMRADETMPPRGELSEQESNGCTEPSAWQLYMGQESSRMSTSYDLLARESWEESEGSDNEISGPLLDSRSLATHFTSSLFLDRDRKTPTKRTFKCSHCNEVFDCPKERRVHSTTVHKEAVPSSSRDQLDQPEMKDIKLLDNRVNVFDDIFVPGLHMQQMYHHQQPLLHQLQPPPSQPGADGLTKAEGDQKIGENLVIPSSIEVTCAICSQRFSSEKSLQIHHRRMHLAEVNKRIRENAKCQICNEEFPSVLLFNAHLKIHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLDEHTNGHTGNAPVKCSLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSGTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -