Basic Information

Insect: Formica selysi
Gene Symbol: -
Assembly: GCA_009859135.1
Location: CM020808.1:2239760-2244800[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0017 0.27 12.5 4.3 3 23 307 331 305 331 0.87

2 11 0.00023 0.039 15.2 0.5 1 23 343 366 343 366 0.95

3 11 0.00079 0.13 13.6 2.7 1 23 407 429 407 429 0.98

4 11 5.1e-07 8.5e-05 23.6 1.5 2 23 484 505 483 505 0.97

5 11 6e-05 0.0099 17.1 1.1 1 23 510 533 510 533 0.95

6 11 9.2e-05 0.015 16.5 0.2 1 23 571 593 571 593 0.97

7 11 8.9e-07 0.00015 22.8 1.7 1 23 603 625 603 625 0.96

8 11 4.3e-06 0.00071 20.7 1.8 1 23 631 653 631 653 0.99

9 11 1e-05 0.0017 19.5 0.2 1 23 659 681 659 681 0.98

10 11 0.00016 0.027 15.7 3.4 1 23 687 709 687 709 0.98

11 11 0.00024 0.04 15.2 0.4 1 21 715 735 715 736 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0017	0.27	12.5	4.3	3	23	307	331	305	331	0.87
2	11	0.00023	0.039	15.2	0.5	1	23	343	366	343	366	0.95
3	11	0.00079	0.13	13.6	2.7	1	23	407	429	407	429	0.98
4	11	5.1e-07	8.5e-05	23.6	1.5	2	23	484	505	483	505	0.97
5	11	6e-05	0.0099	17.1	1.1	1	23	510	533	510	533	0.95
6	11	9.2e-05	0.015	16.5	0.2	1	23	571	593	571	593	0.97
7	11	8.9e-07	0.00015	22.8	1.7	1	23	603	625	603	625	0.96
8	11	4.3e-06	0.00071	20.7	1.8	1	23	631	653	631	653	0.99
9	11	1e-05	0.0017	19.5	0.2	1	23	659	681	659	681	0.98
10	11	0.00016	0.027	15.7	3.4	1	23	687	709	687	709	0.98
11	11	0.00024	0.04	15.2	0.4	1	21	715	735	715	736	0.95

Sequence Information

Coding Sequence: ATGGCAGTTTCGAACGATGACATGATGATGAATAACATGGCTCACGCGGAGCGAATCGTGGGCGACGAGTGCCGTATCTGCCTCAAGTCCTGCATGGACTCGTGTCAGGTGTTCCATAACGGAATACCGGAGAAGATGATGGCAATCGCCGCCGTGCAGGTGGAGGAGGGAGATGGTCTTCCAGCTTCTATTTGTTTATCTTGCAACCGTCTGCTCGATATGTCCTACGACTTTAAATGCCAGATTCAAGATTCCGATGTGAAGCTACGTCAGATCCTGAAGTCACAGGTTCAATCTATGCTGGATGACAAGCATGCAAAGGATGTTAAAACAATGAtgaaacatataattacgaATTTATCCAATGTAGACTCCTGTGAAAAAGATAATCGTGTCATGGAGCAGAAAATCTATTCACACCATGATATTGTTACATTAGATAATACCACTATTCAGTCTGATGAGATAATTAACAACGAATCTTGTATACATAACGAGTTTATACAAAAGACGGAGGAAATTACAGAACCAAATGGAAAAGATGCGCAATACATTGTGCTCAAACAGAATATGCATAGCACTGAAATAGTAGAAGTAGCCTTATGTCACGAGGCACACATGGATAATATGCTCAACAATCAATCAAATCGATTGTGTAGTTCGACAATGGATGATAGATGCATCAAGCAggaacaattaatattacatgaggATAACGAGACACCAGAAAGTTTAACGGACGAAAATAGAAAAGATACATTAAAGATCGAAGTTAAGAATGATATGTCGTTCGAGGATTTCAATGATCACGATGTTTCAAAGCAGACTGCAATATTAGAAACAGACAACCAAGATATGAAAAACGTTATGAACTGCAGTGACGATGAGGAGAAGCCACTGATAAGTAGAACAATCAGATGTCATCACAGATGTATAATTTGCATGAGATCGTTTTCGACAAAAGGGGCGTTACAGCGACATATGATCGTACACAAACACAAACATAAACATAAGACGAAACTGCGTTATGTGTGTTATGTATGTGATAAGCAATTCTCGAGCATTGCTAAGTTGAAGAGTCACGTGCTTAACAATCATACGACGGATGGTAAAACGTCGCAAGAAACTAACGaagataaaaaagttaaaacatCGGCAAAAGTTACTAGAAGCGGCAACGTGTTGGACGGCACgagagaggagaaaaaaaattttaagtttacATGCAAGGTTTGCTCAAAGCAATTCATATATCAAAAGTCCTTTTTATCTCATGCCAAAAGTCATCCCGAATACAATGAGGAGATTTCGGGTGGCGGAGTCGATCAATACGCAAATAAGACAACGAATgagcagaaagagagaacacCTACGTTCAGAGAAAATGAATCcgaagaagaggaggaagaagaggacGATGACGACAGTGATTTGCCGATCGAAAGTCTACAATGCACGCAGTGCGGTAAGCTTTTCGCTACAAAGAGGAACCTGAAAAGGCACATCTCGACGCATAGTGGCTTGAAATTCAACTGCTCGACCTGCGGGAAAGGATTCTCAAGGGTTGACAAGCTGAAAGATCACGAACAATCAAAGCATAAGGAGGAAATATTCGGCAACACTGACGACGAGGATGATGACGATGAGGATAATGAGAACAAAGTCAATGAAAATTCCGAGAGTCGGAAGAAGGACCGACACAACAGGCCGCACAAATGTGCGCTCTGTCCGAAAGCCTTCGCGCAAGCTCAATCTCTGGCGAACCATGTGGAGAGGCATAAACGGGTGAAGGACACGCAGAAGCGATTTCTTTGCGAGAAGTGCAGCAAGTGCTTTGCCCAGAGCGGTTCACTAGTGGCGCATATGCGGACACACACCGGCATCAAGCCATACGTGTGCAACACATGCAGCCGCGCTTTCACCAAGAGCACATATTTACAACTGCATTTGAGAACCCACAGCGGTGAGAAACCGTACATCTGCCAATACTGTAGCAGAGCGTTCGCCCGAGCCAACACCCTGGCGCGACACATCACCATGCATACCGGTGAGGCCAAGTATCATTGCAACGTCTGCGCCAAGTCTTTCCGACGATTGACCTCGCTGAATGAGCACACGTACACGCATACCGGTCAGCGACCGTACGTGTGCAAACTTTGCACCAAAAGCTACAACAATGCCGGATCATTGTACGCCCACACGAAGAAGTGCAAAGCGCAGCAGTTATCCGGCTCAACGACAGCCACGTTCGCGGTCTCTGCGGCGGACAACACGCCGCAACAGAACGACACGTCTATGCCCCAATTACTGATCTACTCTCAGAGAAAATTGGTGGAGGAGGCGACGGTAGGTCAGGTCGTATCCACGCCACAATACATGATGGCGAATGTGCACAATCAGAAAACCGTGCCCGCCAACGTGATTCAACCGTTCTCTGTAGAGGATCCGAGTGTATACAATTCGAAACAGTTCAAGAACCCGTATTATGCTATTTATCCGAACATGTAA
Protein Sequence: MAVSNDDMMMNNMAHAERIVGDECRICLKSCMDSCQVFHNGIPEKMMAIAAVQVEEGDGLPASICLSCNRLLDMSYDFKCQIQDSDVKLRQILKSQVQSMLDDKHAKDVKTMMKHIITNLSNVDSCEKDNRVMEQKIYSHHDIVTLDNTTIQSDEIINNESCIHNEFIQKTEEITEPNGKDAQYIVLKQNMHSTEIVEVALCHEAHMDNMLNNQSNRLCSSTMDDRCIKQEQLILHEDNETPESLTDENRKDTLKIEVKNDMSFEDFNDHDVSKQTAILETDNQDMKNVMNCSDDEEKPLISRTIRCHHRCIICMRSFSTKGALQRHMIVHKHKHKHKTKLRYVCYVCDKQFSSIAKLKSHVLNNHTTDGKTSQETNEDKKVKTSAKVTRSGNVLDGTREEKKNFKFTCKVCSKQFIYQKSFLSHAKSHPEYNEEISGGGVDQYANKTTNEQKERTPTFRENESEEEEEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRVDKLKDHEQSKHKEEIFGNTDDEDDDDEDNENKVNENSESRKKDRHNRPHKCALCPKAFAQAQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNTCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNVCAKSFRRLTSLNEHTYTHTGQRPYVCKLCTKSYNNAGSLYAHTKKCKAQQLSGSTTATFAVSAADNTPQQNDTSMPQLLIYSQRKLVEEATVGQVVSTPQYMMANVHNQKTVPANVIQPFSVEDPSVYNSKQFKNPYYAIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00109993;
90% Identity: iTF_00869066;
80% Identity: iTF_00730241;