Basic Information

Insect: Formica selysi
Gene Symbol: -
Assembly: GCA_009859135.1
Location: CM020805.1:6596707-6605089[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.2e-05 0.0036 18.5 0.7 1 23 144 166 144 166 0.95

2 15 0.00056 0.093 14.0 1.2 3 23 174 194 173 194 0.99

3 15 0.00029 0.049 14.9 0.0 1 23 324 346 324 346 0.98

4 15 0.013 2.2 9.7 0.1 1 23 352 375 352 375 0.97

5 15 5.9e-05 0.0097 17.1 1.8 1 23 405 427 405 427 0.97

6 15 1.5 2.5e+02 3.3 0.0 1 23 442 464 442 464 0.86

7 15 1.1 1.8e+02 3.7 0.2 2 23 472 494 472 494 0.93

8 15 0.0034 0.56 11.6 3.0 2 19 502 519 502 523 0.95

9 15 0.0011 0.18 13.1 4.3 1 23 529 551 529 551 0.97

10 15 0.012 2 9.8 0.1 3 23 558 578 557 578 0.97

11 15 7e-06 0.0012 20.0 0.4 1 23 587 609 587 609 0.98

12 15 0.003 0.5 11.7 0.2 3 23 617 637 615 637 0.97

13 15 0.00042 0.07 14.4 0.4 1 23 643 665 643 666 0.96

14 15 0.019 3.1 9.2 0.0 1 23 680 702 680 702 0.92

15 15 0.01 1.7 10.1 0.0 1 20 1109 1128 1109 1131 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.2e-05	0.0036	18.5	0.7	1	23	144	166	144	166	0.95
2	15	0.00056	0.093	14.0	1.2	3	23	174	194	173	194	0.99
3	15	0.00029	0.049	14.9	0.0	1	23	324	346	324	346	0.98
4	15	0.013	2.2	9.7	0.1	1	23	352	375	352	375	0.97
5	15	5.9e-05	0.0097	17.1	1.8	1	23	405	427	405	427	0.97
6	15	1.5	2.5e+02	3.3	0.0	1	23	442	464	442	464	0.86
7	15	1.1	1.8e+02	3.7	0.2	2	23	472	494	472	494	0.93
8	15	0.0034	0.56	11.6	3.0	2	19	502	519	502	523	0.95
9	15	0.0011	0.18	13.1	4.3	1	23	529	551	529	551	0.97
10	15	0.012	2	9.8	0.1	3	23	558	578	557	578	0.97
11	15	7e-06	0.0012	20.0	0.4	1	23	587	609	587	609	0.98
12	15	0.003	0.5	11.7	0.2	3	23	617	637	615	637	0.97
13	15	0.00042	0.07	14.4	0.4	1	23	643	665	643	666	0.96
14	15	0.019	3.1	9.2	0.0	1	23	680	702	680	702	0.92
15	15	0.01	1.7	10.1	0.0	1	20	1109	1128	1109	1131	0.94

Sequence Information

Coding Sequence: ATGGACGTTGCCGGGGATCTAAATTTGCAATGGGTGGGAGACGTGGAGCTTCACGAGGAGGTGATATGCGGTCTTGAAGCACAGTTGGTTGCTTCAGAGGAGGAGGTGATAGGCGCTTGCGAGGAAGTGGCAGTGGAGGAAACCATTGAGTCTGTTCCTGACGTAGCACCTACGACAGAGTCTGAGATACTGATGGTACCTCAGACTAACGATATGGAATCTATTTATATTGTGCCACAAGATCAGGGTCATGATTATCTGAATATACAGGTGACAGAAGAAGTAATAGCCGACAATTGGGACAGACCCGGTCCAGATGATGGGGTCGAGATTCCAGAAACGAAGGTGGCACATGACAATCTGCTGGAATATGATGATATGGAGATACCTTTGCCGATCGATCAAGACTCGTATCAGAACGCCCGGCCGTATCCATGCGACTTCTGCAGTCGTAGGTTCCGCAAAAAGGCAAACCTGATGAACCACATGGTGGCGCATCAGACAGATCGGCCGCATGGTTGTAACTTATGCGGAGCGCGTTATGTGCGCAAGTGCGACTTGAATAACCACCTGAAGATTCACGCATATCCGCCGTCGCGGGATGGTCTGGAGGACGAGTTGAACGACGAAGACTCTCTAGTAGCCGAAGAGGAGGATGCAACGCCAAGCGGTACCAAGGGCAGGCGCAAAAAGGTGCAATCGAGCGCGCCGCGCAAGCGGAAGAGTAACACCGCCGCTGGTCTGCCGAAGCGCAACAACATTGAAGATAATATCAAGATGGAGATGGGCAAGTATGTGTATAAACCGTACGATAACTACGAGGACACGCTATCGCTACTTGAAGACGACCTGACCGATGGTGATTCTGCCCGCAGCGGCAATTACGCGTCCAGTTCGAGGTGGCAGATGGAAGAGATGTCTGTCGAGCAACAATCACCGCAGTGGCCCGTCACCGATCCGACCAAACCCTACGTCTGTCAATTCTGCGGCGTCGGCTTCGCTAGGGAAAAGGCGCTGGCCTCACACGCGCGTGTTCATGGTGGCGACAGTCCGTTTGAATGCACTTCGTGCGGCGAGATGTTCTGGGACGTCGGCACTCTGCGGGAACATGTGCGCGTCAAACATGGCGGCACTATTCCGCAGCAAACATCCGATGCGGAGGAGTATGACAACGATGCCACTTATACAGGCGACACCGAAAGATTCGGCGAGTTTTATTGCAACACCTGCGGGGTACCGTTTCATCGTTTGGATCTGCTCAAACGCCATCAAAAAGCTCATATCAAGCAAGAAGTGGACACAATGGAGGGTTCCAGTCAGCATCACGTATGCAATGTTTGCGGAGAATGGTTTGAGGAGGCATTAGCATTATTGGCACATGCAGAACTTCATGCTTCAAGatCTCCTAGTCGCCGTTGTCTGTTGTGCGGGGCGAGATGCCGCGATGAAGCTGAAGTTGCAGAACACGTGCAGCAAAACCACGCTGAGGACGCGCCGCCGAACACGTGTACGTTATGCGGAAAAACATGCAAGGACAAACGCAGCTTATTGAAACACTCGTGGGTGCACAATGTCGACAAGACTTTCAGTTGTACAAAGTGTGCAAAACGCTTTCACAGTAAAGCTAGATTGCGAAGACATATGGTATCTCATCGTAACAAAATGGTAGCTTGTGATGAATGTGGAGAAGAATTCCCCGATGGAAGAGCTCTTGTGAGTCACCGTCATTCACATAACAAAGAGCTGGGCGGCCGTTCGTTTCCATGTCGCGAATGCGGCAAGACCTTTGGAAGTCGCAGCTCGCAACAGATCCACATACGTATTCATACGGGTGAGAGACCTTACGGCTGCCGGTTCTGTTGGAAAGCCTTCGCCGACGGCGGTACGTTGAGAAAACACGAGCGCATTCACACCGGCGAGAAACCATACGAATGCGCAATCTGTTCTCGGGCTTTCAATCAGAGAGTGGTTCTGCGGGAACACGTTCGCGCTCATCATTCCGGCCCGGATCCAAAATGCGTGGGCAGTGTGACACCGTTTTTATGCAAGGTATGCGGCATGTCATACGGTACGTCTGAGGAAATAGTGGCGCACATAGTACAGCACTGCGACGACAATACTGCGTTAAGTCGCCAGCCGCAGACCGGACCACGCAAGTATAAGAGGAGACGCAAGTTAAAGCCACACGAGACGAACACAGTGGTACGTAAGAACGAGTTTTCATACGACATGATGGAAAGCACTACTGGCGGCGGTGGCAGCATTGGTGGTGGCGGCGGTTCCGACTCGGAGGACAACACGAAGCGAAAACTTGGCAAGAAAAACAAGCAACATCGGTCGAATGTCGAAGAAGGTTACCAGAATGTACTGAAAAGCTTCGAAAGCTCgctacaaaatataaactcGATCGTGAGCAACTCCAAATTGAACGCATCCAAATCGAAACTTTCGAAGAAGAAACTGCGCAAGGAGGACAAGAAGGAGACGCAATCGTCGAACCAATCGGGCCGGCCGAAGatgatacacacacaaaagACGCGGGTGCCGGTGGAAGTGGGTAGCGATGGGGCGAAGAAAGGCCAGAAGACGAAGACGATGGTAACGCGGACGCCGAAGGTGATGCCAAACGAGCACAAGTCTGGTATTTTCCCTGGCGGTGAAAGGAATCGACCGCGTACCAAAAACGTCAGTTACCATATCGAGGGTAAACTGCAGGTCACACCGGCAACATTCTCGACAAAACCGATAAAGGAGGACGTGTCAacgcagcagcaacagcagcagttGTTGGTGAACATTAAGCAAGAACCAGGCGTACCAAAGGCTACCGGCGACAGTCGCAGGAACAACAATGGCAATATTCTTGCCCTTGGCAAGAATCAAGAATCGTCGATCAAGAAGAGGTCGTCGACCACCTTGAAGAGATCCAAGAGGCAGAAAACGATAGTGAAGCAGGAATTGAACGAGACAGTCGAGCCGGATGCGGAAGAGCAGCAGCAGCATTTGCAGCTACGaaacaacaataataataataataacatggaGAACAGCGGCGATCCATCACGACTAATGGAGCACACGGTGGACGGCAGTAATCTGGAAGTCGCTTTTGAGGCGAGCGTTGTCACCGCTCAGGAAGAGGACCAGGATGAGGAAGAAAGCATATTGCCGCATGATGCGACCGAAGAGATGGACAACGTGGACAACAGCGTTAAACTCAGTGTGAAGGTGGAATCGGCGCCGCAGCCGAGGATGCTCGCTGTGCACAGTGTTATCACACCAGTGGATGATGTCCCGGAGACAATAATACCGGACGCGGTGGAGTACACGTGCGAGATGTGCGCTGCGGTGTTTTCCAGTCGTGCTGAGTTATTGGTGCATGTGCCGatacatatttga
Protein Sequence: MDVAGDLNLQWVGDVELHEEVICGLEAQLVASEEEVIGACEEVAVEETIESVPDVAPTTESEILMVPQTNDMESIYIVPQDQGHDYLNIQVTEEVIADNWDRPGPDDGVEIPETKVAHDNLLEYDDMEIPLPIDQDSYQNARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYVRKCDLNNHLKIHAYPPSRDGLEDELNDEDSLVAEEEDATPSGTKGRRKKVQSSAPRKRKSNTAAGLPKRNNIEDNIKMEMGKYVYKPYDNYEDTLSLLEDDLTDGDSARSGNYASSSRWQMEEMSVEQQSPQWPVTDPTKPYVCQFCGVGFAREKALASHARVHGGDSPFECTSCGEMFWDVGTLREHVRVKHGGTIPQQTSDAEEYDNDATYTGDTERFGEFYCNTCGVPFHRLDLLKRHQKAHIKQEVDTMEGSSQHHVCNVCGEWFEEALALLAHAELHASRSPSRRCLLCGARCRDEAEVAEHVQQNHAEDAPPNTCTLCGKTCKDKRSLLKHSWVHNVDKTFSCTKCAKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKELGGRSFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYECAICSRAFNQRVVLREHVRAHHSGPDPKCVGSVTPFLCKVCGMSYGTSEEIVAHIVQHCDDNTALSRQPQTGPRKYKRRRKLKPHETNTVVRKNEFSYDMMESTTGGGGSIGGGGGSDSEDNTKRKLGKKNKQHRSNVEEGYQNVLKSFESSLQNINSIVSNSKLNASKSKLSKKKLRKEDKKETQSSNQSGRPKMIHTQKTRVPVEVGSDGAKKGQKTKTMVTRTPKVMPNEHKSGIFPGGERNRPRTKNVSYHIEGKLQVTPATFSTKPIKEDVSTQQQQQQLLVNIKQEPGVPKATGDSRRNNNGNILALGKNQESSIKKRSSTTLKRSKRQKTIVKQELNETVEPDAEEQQQHLQLRNNNNNNNNMENSGDPSRLMEHTVDGSNLEVAFEASVVTAQEEDQDEEESILPHDATEEMDNVDNSVKLSVKVESAPQPRMLAVHSVITPVDDVPETIIPDAVEYTCEMCAAVFSSRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00730239;
90% Identity: iTF_00867632;
80% Identity: -