Fsel027047.1
Basic Information
- Insect
- Formica selysi
- Gene Symbol
- -
- Assembly
- GCA_009859135.1
- Location
- CM020829.1:5526222-5531136[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.017 2.8 9.3 0.2 6 21 12 27 6 28 0.86 2 14 0.68 1.1e+02 4.3 0.0 2 20 34 52 33 54 0.91 3 14 3.2 5.3e+02 2.2 0.1 1 12 226 237 226 244 0.92 4 14 0.023 3.8 9.0 1.7 1 20 357 376 357 378 0.94 5 14 1.6e-06 0.00026 22.1 1.2 2 23 383 404 382 404 0.97 6 14 0.00028 0.046 15.0 4.7 1 23 415 437 415 437 0.98 7 14 0.016 2.7 9.4 0.3 1 23 456 477 456 477 0.78 8 14 0.00075 0.12 13.6 0.1 2 23 483 504 482 504 0.95 9 14 3.9e-05 0.0065 17.7 4.8 1 23 561 583 561 583 0.99 10 14 1.7e-06 0.00028 21.9 3.7 1 23 589 611 589 611 0.96 11 14 0.0002 0.033 15.5 4.1 1 23 617 639 617 639 0.97 12 14 1.3e-06 0.00022 22.3 0.4 1 23 645 667 645 667 0.98 13 14 2.5e-05 0.0041 18.3 0.2 1 23 671 693 671 693 0.99 14 14 0.00032 0.054 14.8 0.2 1 23 701 723 701 723 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCGCTGAACCTTATCTGCCCAATGTGTTGCGGTGAAACTTTCAATAACCCTCAGTCTCTTAAGTACCACTTGTTAAGTATTACGGACAATCTCTATTGTCCTGGCTGTTCACAGCGTTCTGACTCTGTGGCAGCGCTCATTCAGCATCTTGACAAATGCGAGCAAAATTTGGAGCGCAAGGTGAGGCTTGACGTTCTGACAGATAAACTCCGGAAAGAGTCTGAAGCCAAAATGGATAAAGTGCAGATTAATGGGAGCTTTCTTGCGACTGTGAGTGACAATGGAATTGTTATAATGGATGATCCACAGACGATACAAATGGATGAGAATGGAGAAATTAAAGTCGTAGAAAAGATGGACACGGAAGAAATACAACCAGATCAAAATTCTCTGGATTTCAAGATGTCCGAAGGGCTTTCTGGTGTCAGTGGCAGAATGCAAAGAAGACTGCAGCCAATGCAAGAATTAGTGGCTGTTCCTATATCGAATTCCAGTGCAGAGTGCAAAGAAACGGAAAAAAGCGTAATTGCCGTATTACCGGAAAATTCCGAGTTTCTGGATGCCACTACCTTGATCGATGTCGACCGTATAAATGAGGCAGAAGAGATTGACGAAACTGGTCTTTTGCGAGTCAAGCAAGAACTATGTGAGGTGGAATCTGATGCTGTATATAGCTGCACTAGCTGTGAAATCAGCTTCAACTCCATTCTGGAACATATCAAGCAGTTTCACGATGGTCAGGAAGTTTTGCTGGAAATGGCAGAGCAGTTAAACGATCTGGCGACGCCTACGAATCAAGTGTCCGCGACGTCTGAAGATTCGGAAAACGTAGTAAAAGGACGACAACGGCAAACAATGAATACGCTGCGTACAGAGGAATGTGTAGACAATGAGGGTAGATTCTACACGAGAAAGGTAGTGCAAATCGAGAGATTCTGGGACCGTACACCGATCCAGATAACATCGCAATCAGCAAAAGCTCCAATGATCGAGAAGTTCTTTTCGAATGTGGAAGGTGTTAAGGTACGAGAGAAGCGCTTGGCAACTGCGTCAATGCGAATGTACAGATGCAATCAATGCTTGCAGCAATTCTCCAAGTTAGGAAATTTTCGTGTGCACGCATGTCTTCGTGGCAACAAACGCTGCGAGCACTGCGATCAAAGCTTTGCGACACCCAAAGCCTTGCAGCTTCACATGAAAGTACATGAAGGCGACATCGATTCAGGCCAAAAGTCATTTATTTGTACCATTTGTGGTACCGAATTCTGCTCCCACAAAAGCTTACGTTTGCATTCGAGAATGCATGCCCCAGTAAGGGCCAGACATGTTGATGCACCCGAGGGAACTCCTAACGCAACTTTCACTTGTCCTGAATGTgGTAAAACTTTATCAGAATCATACAAAGATACGCACATGGCGTTACATACTGGTGATTCAGTGACATGCGCTGTCTGTAATCGGAAATTTGATTCCGCGGACAGTTTAACGATGCATGCAGCGGTGCATACCGAGATAGCACTCTCGCCGTCGCCTACCCCACCTACTTCGATTTCAACTTCGTTGGCTAGAGAGACAGCAGTAACAACGACAACAACGGCGACAACAATTGCGATGACATCAACAACGACGACAACAACGACAGCGACGGTGGAAACTAGTGATAGTCAGAAACCCTATCAGTGCCAGCATTGTGGTCGCAGGTTTACCAGACCTCACGAAAAAGTGAAACACGAACGAATTCACACTGGGGAGAAACCACATGCTTGTGAGGTTTGCGGGAAGACTTTTCGCGTGTCCTATTGCCTGACCCTGCATATGCGTACGCATACCGGTGTGCGGCCTTATGCTTGCCAGCACTGTGGCAAACGTTTCAAGGCGTCTTCCGTCTACAATCATCATCTGCTGACACATGGCGAAGAACGTGCTTACGTGTGTCCATATTGTCCGAAGACGTTCAAAACACGAGTGCAATTGGCTGGTCACAAGAACAGTCACACGAAGCCGTTTCGATGTACCGAATGCTCGCGACCGTTCGCGTCGCTCTATGCCGTTCGCGCGCACATCCAGACACataagaaagataataatCTCAAGTTTAGCTGCTATATATGCGGTGCATCATATGGTCGGGCGTTCGCTCTGAAGGATCATCTGAAGCAACACGGCCAGGACGTGCTGGCGCCACCAGAACCTGCACGGGAAGAGGAAGTGCACGAGGACTTTCTCCTCCGGGAGGAGGGGGCCGAGCTCGTGGTCCCGTCGCCTTCGCTTCCTCTCGTCGCACATTCCTCCGACGTGGACGATaccgattaa
- Protein Sequence
- MGSLNLICPMCCGETFNNPQSLKYHLLSITDNLYCPGCSQRSDSVAALIQHLDKCEQNLERKVRLDVLTDKLRKESEAKMDKVQINGSFLATVSDNGIVIMDDPQTIQMDENGEIKVVEKMDTEEIQPDQNSLDFKMSEGLSGVSGRMQRRLQPMQELVAVPISNSSAECKETEKSVIAVLPENSEFLDATTLIDVDRINEAEEIDETGLLRVKQELCEVESDAVYSCTSCEISFNSILEHIKQFHDGQEVLLEMAEQLNDLATPTNQVSATSEDSENVVKGRQRQTMNTLRTEECVDNEGRFYTRKVVQIERFWDRTPIQITSQSAKAPMIEKFFSNVEGVKVREKRLATASMRMYRCNQCLQQFSKLGNFRVHACLRGNKRCEHCDQSFATPKALQLHMKVHEGDIDSGQKSFICTICGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLSESYKDTHMALHTGDSVTCAVCNRKFDSADSLTMHAAVHTEIALSPSPTPPTSISTSLARETAVTTTTTATTIAMTSTTTTTTTATVETSDSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYVCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAVRAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPAREEEVHEDFLLREEGAELVVPSPSLPLVAHSSDVDDTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00867643;
- 90% Identity
- iTF_00869070;
- 80% Identity
- -