Basic Information

Insect: Formica selysi
Gene Symbol: -
Assembly: GCA_009859135.1
Location: CM020818.1:7077763-7082706[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.17 28 6.2 2.0 1 23 271 293 271 293 0.92

2 12 0.0057 0.94 10.9 4.7 1 23 298 321 298 322 0.95

3 12 0.00025 0.041 15.1 1.4 1 23 364 387 364 387 0.97

4 12 3.6e-08 5.9e-06 27.2 1.8 1 23 392 414 392 414 0.98

5 12 0.0032 0.53 11.6 0.1 1 23 423 446 423 446 0.89

6 12 2.3e-06 0.00037 21.6 4.4 1 23 452 474 452 474 0.98

7 12 5.4e-06 0.00089 20.4 1.1 1 23 480 502 480 502 0.98

8 12 0.00044 0.072 14.4 3.6 1 23 508 530 508 530 0.97

9 12 8.5e-09 1.4e-06 29.2 2.1 1 23 536 558 536 558 0.99

10 12 4.6e-06 0.00076 20.6 3.2 1 23 564 586 564 586 0.98

11 12 4.7e-06 0.00078 20.6 2.5 1 23 620 642 620 642 0.98

12 12 4e-07 6.6e-05 23.9 1.8 1 23 648 670 648 670 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.17	28	6.2	2.0	1	23	271	293	271	293	0.92
2	12	0.0057	0.94	10.9	4.7	1	23	298	321	298	322	0.95
3	12	0.00025	0.041	15.1	1.4	1	23	364	387	364	387	0.97
4	12	3.6e-08	5.9e-06	27.2	1.8	1	23	392	414	392	414	0.98
5	12	0.0032	0.53	11.6	0.1	1	23	423	446	423	446	0.89
6	12	2.3e-06	0.00037	21.6	4.4	1	23	452	474	452	474	0.98
7	12	5.4e-06	0.00089	20.4	1.1	1	23	480	502	480	502	0.98
8	12	0.00044	0.072	14.4	3.6	1	23	508	530	508	530	0.97
9	12	8.5e-09	1.4e-06	29.2	2.1	1	23	536	558	536	558	0.99
10	12	4.6e-06	0.00076	20.6	3.2	1	23	564	586	564	586	0.98
11	12	4.7e-06	0.00078	20.6	2.5	1	23	620	642	620	642	0.98
12	12	4e-07	6.6e-05	23.9	1.8	1	23	648	670	648	670	0.98

Sequence Information

Coding Sequence: ATGGACGTGTTTCTGTACGATTCAACGATCTGCCGATTGTGCGCGGCGGACAACGGCAACGAGCATCTGTTCGCCAACGAAACAAGCGAGTCGGATTTGTGTTCACTGGTGAATCGTTATCTGCCGCTCAAGattcgAGATGATGGCAAATTACCACAGACTATTTGTCCGGGCTGTAATATCCAGCTGGAGGCAACTGCACAATTCTTTGACTTGTTGGTGGTTGGTCAGCGCAAGTTACGTGAACTCTGGAAATATCAAGTCGAGCAGCACCGCAGAGCAGAACGCTTACGCAATAAGAAGGAGAGTGCAGAGAACGAAACAGAAGGAGTGGAAATGGATAGTATAACTTCATGCAATGAGGATGAACAGTATGAACAGCAAATCATTATCAAAATAATGCCAGATGGATCTATGTATGCAGCAGAGCATGAAATGAGTTTACAAATGGAAGGCTTAACTAAGCCACGGAGAAAACGCGGACGTCCACCCAAAGTACAAGCAGAGGCCGAATCTTTgacGAAAGAGAATGCGGAAGCTGTGAGTCAAGGTGAGGAAGATAAGCAAGAAGAAGAGGTTGAAGAAGTGGATGGTGATGGTAGACGGAGAAGGAAACGCAAAGTTCCCAAAAGGTTTATGGAAGCGGTGCAAGGAAAAGAACTGGAAAGGATATTCAAGGAGGAAGGCGATGGTCAGGAAGAAGTAATTGGTCGTCTCGAAACGCAGGAAGGTAAAAACTTGGGTGAAGTGGTAATCATGAATCGTGGAAGAGCACGATCAAAATCGAAACTTCGTCGTcgaaaaaacaaatttacatGTCAGCTCTGTGGTAGAAATTTTCTACAACGCAGCAGATATATAGTACATAAAAGTTTCCATAAGGACAACAAGTACGAGTGCATACAATGTAAGATGCATTTTAATAGTAAAGAGAACCTAGAATTACATCAAAAGACGACTCATCATAATTCAAATCTTGCTGAAGAAAATACCGAGGTACAAGATACCGAACTCGAGAGATTAGAGACGCACAGTGCGGAACAGGATGCCACTACAACGACAATGAAAGAAGATTCCAGCAATGCGATTTATATGTGCGAAAGATGCGACAAACATTTCGAATTGAAACAGGAGTATGAACTGCACATGAGAGTGGTGCATGAACTACAGAAATTTACGTGCAACGTTTGCAACAAGGATTTCACAAATCAGTCGAATTTGAAAATACACATGACCACACATAAGGAAACTAAACCAAACAAGGAATTTCCCTGTGATATTTGTGGCAAGGTATTAAACCATCCCAGTTCCGTTGTGTATCATAAGGAAGCTGAGCACAACAATGGACGTCGTTTTGTTTGCAACAAATGTAACAGAAGTTTCAAGCACAAGCAATTGCTTCAGCGGCATCAGTTGGTACACTCGGATGACCGGCCGTTCATTTGTAAGTCCTGCAATGCCAGCTTCAAGACAAAGGCGAATCTGATTAATCATCAGTCCACTCATACGGGCGAGAAGAAGTATTTCTGCGAGCGTTGCAACCAACAGTTTGCACACAAGACTAGTCTCACATTGCATCAAAGATGGCATGACGGTGAAAAGCCGTACAAATGTGATGTGTGCCACAAGAGCTTTTCGCAGAATGGCAATTTACAGGAACATATGCGCATCCACACCGGCGAAAAGCCGTATTCCTGTGACTTCTGTGGCCGAAAATTCACCACGTCATCGCAATTTAGGCTGCACGTGAAACGGCATACTGGCGAACGGCCGTGGAAATGCGAGTTTTGCGCGAAATGCTTTCTGCACAAGGATACGTGGAAATGTCATGTGCGCCGGCACAAAGGTGAACGTCCGTTTCAATGCACCCACTGCAATCGTGGATTTACAGAGCAATGGGCGCTGAAGAAACATCTTCGTTTACATACTGGTGAGAAGCCTTATTCCTGCGATCTATGCGGCAAGGCTTTCGCCGATTGCTCAAATCTGACGAAGCACAAAAAGGTGCACAGGGAGAATAAGGTACTAACCGTAGACGGCTCGGAAGAATCTCCGATCGGCGAAGTGTGGCAAATTCTGCCAAACTCGCAGGAGAATGACGAACAGTCGGTGCTCAATGAACAAATGACGCAAGTGATTGCCACTGATGAAGCGTCTACTGATGGGATTCAACAAATCTACTACGTGTCCTATCAGGATCCTAATAATCCTAGTGAATCGCGAACGTTGCACTTCCTTGATGCTGGCATGATCAAAAATAAAGACGAGACGAAGACAAATGCGGATTTCTTACCACGTTTGGACGATGAGAACGACGAAATAATTGCtgacaaaattgtaaataatacaGCTAGCAATAATGAGGAACAGTCGGAGATAGAACTATCGGAATCAGATTTACAATTACAAatTACCGATGAACATGGAAATCCGATTCAAATATCCATCCAAGAGGCTCGACAGCTTCTCTCTCAAGGACATTTCATCAGCCAATTGAACGACGGTCAGATCATTAGGGTTCATCCTGGAATATTCGCGCAACATCTTCAAGCATTAAATATTCACATCGATGAAGAGGCTGCTGTCGCAGCAGAAAACAGCATTGTTACGCACCCTAACGTGAACAAAGAGGGGATGGAGACGGGGATTCAGGCCGACGCGGAAGCAATCGTTCAAGCCCTCGAGgACGAGGACACTGATGCCACTGCAGTCGCGACCATCAATCAATTGGAGAATGTCGAGCAGACTGGAATCGCAGATGGTGAACAGACAATTGAATTCATGACCCAGGACGGACAAAAAGTTCGCGTCTTGACATCGTATCCCGTCGATCCAATGCGAATCGACTTAACTCCAGAGTACATGactattgtataa
Protein Sequence: MDVFLYDSTICRLCAADNGNEHLFANETSESDLCSLVNRYLPLKIRDDGKLPQTICPGCNIQLEATAQFFDLLVVGQRKLRELWKYQVEQHRRAERLRNKKESAENETEGVEMDSITSCNEDEQYEQQIIIKIMPDGSMYAAEHEMSLQMEGLTKPRRKRGRPPKVQAEAESLTKENAEAVSQGEEDKQEEEVEEVDGDGRRRRKRKVPKRFMEAVQGKELERIFKEEGDGQEEVIGRLETQEGKNLGEVVIMNRGRARSKSKLRRRKNKFTCQLCGRNFLQRSRYIVHKSFHKDNKYECIQCKMHFNSKENLELHQKTTHHNSNLAEENTEVQDTELERLETHSAEQDATTTTMKEDSSNAIYMCERCDKHFELKQEYELHMRVVHELQKFTCNVCNKDFTNQSNLKIHMTTHKETKPNKEFPCDICGKVLNHPSSVVYHKEAEHNNGRRFVCNKCNRSFKHKQLLQRHQLVHSDDRPFICKSCNASFKTKANLINHQSTHTGEKKYFCERCNQQFAHKTSLTLHQRWHDGEKPYKCDVCHKSFSQNGNLQEHMRIHTGEKPYSCDFCGRKFTTSSQFRLHVKRHTGERPWKCEFCAKCFLHKDTWKCHVRRHKGERPFQCTHCNRGFTEQWALKKHLRLHTGEKPYSCDLCGKAFADCSNLTKHKKVHRENKVLTVDGSEESPIGEVWQILPNSQENDEQSVLNEQMTQVIATDEASTDGIQQIYYVSYQDPNNPSESRTLHFLDAGMIKNKDETKTNADFLPRLDDENDEIIADKIVNNTASNNEEQSEIELSESDLQLQITDEHGNPIQISIQEARQLLSQGHFISQLNDGQIIRVHPGIFAQHLQALNIHIDEEAAVAAENSIVTHPNVNKEGMETGIQADAEAIVQALEDEDTDATAVATINQLENVEQTGIADGEQTIEFMTQDGQKVRVLTSYPVDPMRIDLTPEYMTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01245382;
90% Identity: iTF_00280115; iTF_00280701; iTF_00730232; iTF_01245382; iTF_00729518;
80% Identity: -