Basic Information

Insect: Formica exsecta
Gene Symbol: ush
Assembly: GCA_003651465.1
Location: NW:973999-1024543[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0041 0.28 11.1 0.0 3 20 283 300 281 302 0.92

2 8 3e-05 0.002 17.8 1.3 1 23 334 356 334 356 0.98

3 8 0.069 4.6 7.2 1.6 3 20 402 419 401 421 0.93

4 8 0.01 0.7 9.8 4.4 2 21 636 655 635 656 0.94

5 8 0.048 3.2 7.7 0.0 3 20 685 702 683 704 0.91

6 8 0.012 0.79 9.7 0.0 2 23 743 764 742 764 0.95

7 8 0.0064 0.43 10.5 1.4 1 23 770 792 770 792 0.99

8 8 0.067 4.5 7.3 0.5 3 21 891 909 890 910 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0041	0.28	11.1	0.0	3	20	283	300	281	302	0.92
2	8	3e-05	0.002	17.8	1.3	1	23	334	356	334	356	0.98
3	8	0.069	4.6	7.2	1.6	3	20	402	419	401	421	0.93
4	8	0.01	0.7	9.8	4.4	2	21	636	655	635	656	0.94
5	8	0.048	3.2	7.7	0.0	3	20	685	702	683	704	0.91
6	8	0.012	0.79	9.7	0.0	2	23	743	764	742	764	0.95
7	8	0.0064	0.43	10.5	1.4	1	23	770	792	770	792	0.99
8	8	0.067	4.5	7.3	0.5	3	21	891	909	890	910	0.92

Sequence Information

Coding Sequence: ATGCTTTTTTACTCTAAGGATTTATTCCTTTTACGCAACATGAGCATACTTTTGTGGCGTCAACGCAGGGCGAGTCAGCTGCGAACTGAAACTGCTGCTCTCTCCTTATCGAGGGAGGATGAGGAATGGAGTGACTCGGAGAAGACCCCGTCGGTGAGCAGCGGCGTGGACGGTGGCGGATCCGCGGTGTCGAGTCCAATCGCGCCACCGGTGGTTGAAGAAGACTCGAGTTTACCGCCCCCTCCGAGACTCAACCCCCCATCATCCTCGACCAGCTCCTCCGCCAGCGAAGATATCAGACTGCGCCTAAGTGTGCTTTCGGAGGATACTAGGAAGCGTCTGGTCAGTCTTACCGAGGACATCGAGATTGCCAGGGGTATACGAGACCGCCATGCGCCGTCGTCCAGAAGCGCGCGGACGCGGGAGTCGAGTCCCAAGGACGTCGACGAGGATCAACAGGCTGTTAAGGAGGACGAGTGCCAGCCGAGGCCGTCGTCCTCGTCATCATCGTCCACCGCCATCAGGAGACGGGACTCCGTCTGTCGCAGGGACTCGGAGGACTCCGTCACCGCGGTGGCCACCGAGGCCAAGAGGATGAGACTCGACGACGAGGCAGCACCAAGACTGAGACTCAATGCTAGTCTGGCGACGGATCCCGCACTGCGACCCGCCGCTGTCGCCGCGCTTACCGTGAAGCCCGAGAACACGTCGCCGCCGAACCAGACGCCGCCGCTTCCAGCCGGGCTTCAGAACGCCATCGCATCGGGTCGGCTGTTCGTCCTGCCGACCGATGGCAAGGAAACGATCACGGTGGAGCCGGCTAGGCCGCCACCGACCGCCCTGATCTGCCCACCGTGCGGCATCCGGTTCAGTTCGGCGAGCACCCTCGAGGCCCATCGTACCTTCTACTGCGCCCATCGACCGCGCGCTGACGAAGACGCGACgaacgacgaggacgacgacggcAAGTCCGGCGGCAAGTTCGAGGTGCGAAAGGCGTATGCGTGTCCGCACTGCTCGTACAGCGCCGACAAGAAGGTGTCTCTGAATCGTCACATGCGGATGCACGCGGCCTCGCCGGCGCCGTCGACGATACCAACGGCAGCGACGGCGGTGTCGGCGAACCCGAACTCCTCGACGGGCAACCCTCCCGGTCAGACCGCCGCATCTAACGGTTCTTTGAACGAGGAGGCCGAAAGATACTGCAGGAATTGTGACATTAGGTTCAGCTCCTTGAAGACGTACAGGGCGCACAAGACACATTATTGCAGCACCAGGCACGTGGTGAAGGACACGTTACCGACGCCCACGGCAACGTCGGCGTCCTCGGTGAAAGCATCACCGCCGACCAGCTCGAGTCCCGGTGATTCGCCGCCTCCTCAGCCGTGCCTGGCGCTACCTACCAATCCCATCCTTATCGTACCATATTCGTTGTTTCGCGGCGCGAGCGTCCTCGCCGCGCCGGCACTTCCGGCCCCTGACACAGCGTGCTTCCTTTTGCCAAACGGTTCCCTTCAACCAATGACGAGGGGTCTCACTCCGACAACACAGAACGCGGTAGTAGAGCCGCCAGCTGTACTAAGAGCAGCGAATAAACCCTCGACGCCAGCGTCGGTTGTGGCAACATCTACGTCGCCATCTGCTTCGGCGCCCCTTGATCTCAGCGTACGCAGATCACCGGTGCACCAAGACGAGAAGGAGAACAGGATGTCGCCAACACCGTCGTCCCTGCCGCCACCTCCGGGCAGTCCCAGATCCAGGGGCAGCGGTAGTCCTAGAACGAGATCCATCGGTCCGGCGCAGACGGTCGCCGTCGCGCCACCCCCGCCCACGGAGCTCGCCCTGAGACTCGCCGAGCTGCCGCCACCCCCTGTTCCCGGAGTACTCGTCAAACAAGGCGTCTCCAGGTGCAAGGAATGCAATATCGTGTTCTGTAGACACGAGAATTTTGTCGCTCATAAGAAGCATTACTGCCAGGCAAGGGAGACGACGGTGAGCAACAGTCCACCACCCCCTGGCACGCCCCCGCCACCCATCTGCGTCCAGCTCATCTGCGCCGCGTGCGGCATCAAATTCGCTTCCATGGACAATCTGGTCGCTCACCAGGCGTTTTACTGTCCTAAAAGGCCCGAACCACAGGAGCATCACACGCGGTGTTCTAAGTGCAAGGCGATAATAGAACCCGGCGGCAATCATACCTGCGCCAGTGGTACGACTGGTGGTTGGCGATGTCCGGTTTGCGGTGCCGTCAGCCCCACGGCCGGTGCTGCCCAGCGTCACATGGATGCCCACCAAGGTGTCAAGGCCTTTCGATGCACGATCTGCCGTTACAAAGGCAATACTCTACGCGGTATGAGGACCCATATAAGGATGCACTTTGAGAAGCGCGGCACTGATCTACAGGAAGAGAATTACATAACGTGCGTACTGGATGACGAGGCGACGCTCCCGACACCGGAGCCTGCGGCCGCCACGACGCCGGAGGAGATTCCCGCAGAGATCCAGGTGAATGGCAAGACGGAGATACGGAAGAGCCCGcaaccgccgccgccgccgccgccgccaccgcctcCGCTGGTGCCGGCAATCGCTAGCAAGGTGAAGCAGGAACGCGAAGACACGCCACCGCCGGAGGAGAGTTTGGACCCCAGCAAAAGCGGTCCTCGCTACTGTCGCTCCTGCGACatcagttttaattatttgagcACCTTTATCGCTCATAAGAAATTTTACTGCTCGAGTCACGCCGGTGAGgcgagtaataataataataacaacaacaataacaataatgctAGCGGTCATCCGACACCTCCGCCAACTGGCAGGACTGAGGCGTCGGTGCTGTAA
Protein Sequence: MLFYSKDLFLLRNMSILLWRQRRASQLRTETAALSLSREDEEWSDSEKTPSVSSGVDGGGSAVSSPIAPPVVEEDSSLPPPPRLNPPSSSTSSSASEDIRLRLSVLSEDTRKRLVSLTEDIEIARGIRDRHAPSSRSARTRESSPKDVDEDQQAVKEDECQPRPSSSSSSSTAIRRRDSVCRRDSEDSVTAVATEAKRMRLDDEAAPRLRLNASLATDPALRPAAVAALTVKPENTSPPNQTPPLPAGLQNAIASGRLFVLPTDGKETITVEPARPPPTALICPPCGIRFSSASTLEAHRTFYCAHRPRADEDATNDEDDDGKSGGKFEVRKAYACPHCSYSADKKVSLNRHMRMHAASPAPSTIPTAATAVSANPNSSTGNPPGQTAASNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTLPTPTATSASSVKASPPTSSSPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPALPAPDTACFLLPNGSLQPMTRGLTPTTQNAVVEPPAVLRAANKPSTPASVVATSTSPSASAPLDLSVRRSPVHQDEKENRMSPTPSSLPPPPGSPRSRGSGSPRTRSIGPAQTVAVAPPPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARETTVSNSPPPPGTPPPPICVQLICAACGIKFASMDNLVAHQAFYCPKRPEPQEHHTRCSKCKAIIEPGGNHTCASGTTGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDEATLPTPEPAAATTPEEIPAEIQVNGKTEIRKSPQPPPPPPPPPPPLVPAIASKVKQEREDTPPPEESLDPSKSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNNASGHPTPPPTGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00015644;
90% Identity: iTF_01255115;
80% Identity: -