Fexs009961.1
Basic Information
- Insect
- Formica exsecta
- Gene Symbol
- ZNF131
- Assembly
- GCA_003651465.1
- Location
- NW:616102-646958[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 1 9.3 1.1 3 21 287 305 285 309 0.89 2 12 0.0031 0.21 11.5 0.3 2 23 324 346 323 346 0.96 3 12 0.16 11 6.1 0.5 1 23 365 389 365 389 0.91 4 12 2.8 1.9e+02 2.2 1.4 3 19 410 423 408 431 0.57 5 12 0.0051 0.35 10.8 0.3 1 21 436 456 436 457 0.95 6 12 5.8e-05 0.0039 16.9 0.5 1 23 520 541 520 541 0.98 7 12 7.4e-05 0.005 16.6 0.0 1 21 547 567 547 568 0.95 8 12 2.9e-05 0.0019 17.9 1.8 1 23 586 608 586 608 0.97 9 12 0.00077 0.052 13.4 0.1 1 23 613 638 613 638 0.96 10 12 9.5e-05 0.0064 16.2 1.8 1 23 645 667 645 667 0.98 11 12 0.053 3.6 7.6 6.1 1 23 679 703 679 703 0.93 12 12 0.00076 0.051 13.4 1.7 1 21 709 729 709 734 0.94
Sequence Information
- Coding Sequence
- ATGCCACATATGCATGAGGAGGATGTGGATCCCGACGATGATCATCAGGAACATCCACCACCGACGTATACTGGTGGCAAATGGAAACCTACGGAGACAACGCagATCGAGGAATACGAGAGCAAAAACACATCCGGACAGCCGCCGCCAGGACACACGCGAGGGAAATGGGTACCGGGTGCACGAACGGATATCGAATCGGGATATTGGTGCATTCCTTGCGGCAGGAAGCTTGCCTCACGATTGGTCTACAACAGACATGTGCTCTCTGCTTTGCATGCCAGAAGGAGCATTAAAGAGATCGACGACGGTCTCCATTTATCGCGCAGAATAAAGTTGCGCGCGAGCAAAAGAATGTCTACTCGTAGGCAGGCTTCGTTTACAACgaGGACGAAAGAAGTGCCCGATCAAAACAAAGTTAAGAAAGGTCTCCGTCGAAGAGACAAGGACGTTCTCACGTGTGAGATGTGCCACGCGCGCGTGAAGAGGCTTCAGATGGGTAAACATTTGCTTTCCCATTACCATTGCCGTGTGGCGGGAGTGAATCCTTGCAGTCCAAATGCACGTCGCTTCCTGTTGGATAACATAGCGAATGTGGTACGACAATGTCCTTTCCAATGCGCTCCTTGTCGTTTTTACTGTAACACCGAGGAAACGTTCCTACTTCATTGGCGTTCTGATCTTCATATCAAGACCTTAGAAAGAAGTGGCGGTAGGTGCAGGTGCACTCCATGCGATTTTTGGTGCGAAGACAACGAGACGATGGAATCTCACCTTCTGAGTATAAGTCATCGTGACGTGGTATCGATGATGAACGGCTCGGTGCCGATAGTAATTAGTCGTCAACGAGCATTATTCTGCGGTAGTTGCAATCGGCAATTTCGATACAATTTCCAGCTACGATCGCACGCTAAAGAGACTGGTCACGACGCAAGTTATACCGCATCAGATGAATATCAGCAACGTATCAAATGCGATTTGTGTCCCCAAATTGTCCGGTCTTTGGTTGCGCTTCAACGTCATCAATTAATCTGTCACGTCGCCAAGGATAAAGAAAAGGACGAAGTCGCAGAGGCCGCGCAACCGGCGCCGTATTTCTGCTCGTTCTGCTCGATGAATTTCATCACCGCCCAAGAAGCAGTAGTGCATCGGAGAAGTTCTAGTCACAAAGAGGCTGTAAAAACACGCAAGATTCAGGAAGGATTATTGGAAACCGTGACGCGAGAGTGTCCTCACTGCGGCGAAAAGCAGTCAAGTCTTACAGCGCACAAAAGTCATCTTCTCCAAAATCATCCGGAACTTTGTCACAgatgTCCTCGATGCGGCATGCAGTTTGCCCTGTCGCAAGATGTCACTAGACATACACGAGAAGATAATTGTACCaaagataataaatcaaatatggCTAAAAGAatagatatgaaaaaagaatggAAATGCAATGATTGCATCTTCTCAACGGATTCTCAAAGTGAATTCATTTTTCATGAAGCCCTCCATGCTGGTGCAGTTTCAACTGACAAAGAAATATCTAGTTCGAGCAAGTTATTACCGAAATATCGATGCCCGATTTGTAAGAAGCCCTTTGCGAAAGTTACGCTACGGAATCACATCAGACAGCATACTGGAGAGAAGCCCTTTCCCTGCGTCAAGTGTTCAATCTCATTCTCGAGAAGAGCGGATCTCGTCGCGCATCAAAGGATATGCGCTTCCTCGTCACCCGGATCCCTGGACAAAACTGGCCGTCGACGAAACTTCATCTGTTCAGAGTGCAAAGAAGGTTTTTATACAAAgCATGCTCTTCGACAGCACATACTGAGACACGCTGGTAAAAAGTACAAGTGTGGACTTCCGGGATGTCCCACGATTCTTCGTACTGCATCTGAATTGAAAAGCCATCGAAGATTGGTCCATGACAACATCGAGAAACAATATCCATGTCCTAATTGCTCTTATTCTGCGAAAACAAAGACGCAGTTGCGCAGGCATAGAACGAGGCACGATGATTCTACAAACGCTGAGAATATCCAAACTCACTCCTGCACTTACGACAGTTGCAATTTTAAGACGAAAATCAGTTCTCACTTGCGGAGACACATGCGGTTGCATACAGGATCCAAACCATACAAATGTCGGCATTGTTCTTATGCGAGTAACACCTTGGAAAATCTCCGGAAGCACATACTATCAACGAATTTACATCCAGGTAAGACAATTTATGCATGTGATTTTTGCAAGGGGAAGACGTCGAAGCCATTCTGCACGAATTTTTCCAAGGAGCTTCGTGCTCACTTGTTGGAAGCTCACGCAAAGGACTTTCCCACACCTAATGATGCGAATACCTACGTCCTCGGGATTTTTTCCGCCAATTCCAGCACCAACGCTTCTACATCCGATTAA
- Protein Sequence
- MPHMHEEDVDPDDDHQEHPPPTYTGGKWKPTETTQIEEYESKNTSGQPPPGHTRGKWVPGARTDIESGYWCIPCGRKLASRLVYNRHVLSALHARRSIKEIDDGLHLSRRIKLRASKRMSTRRQASFTTRTKEVPDQNKVKKGLRRRDKDVLTCEMCHARVKRLQMGKHLLSHYHCRVAGVNPCSPNARRFLLDNIANVVRQCPFQCAPCRFYCNTEETFLLHWRSDLHIKTLERSGGRCRCTPCDFWCEDNETMESHLLSISHRDVVSMMNGSVPIVISRQRALFCGSCNRQFRYNFQLRSHAKETGHDASYTASDEYQQRIKCDLCPQIVRSLVALQRHQLICHVAKDKEKDEVAEAAQPAPYFCSFCSMNFITAQEAVVHRRSSSHKEAVKTRKIQEGLLETVTRECPHCGEKQSSLTAHKSHLLQNHPELCHRCPRCGMQFALSQDVTRHTREDNCTKDNKSNMAKRIDMKKEWKCNDCIFSTDSQSEFIFHEALHAGAVSTDKEISSSSKLLPKYRCPICKKPFAKVTLRNHIRQHTGEKPFPCVKCSISFSRRADLVAHQRICASSSPGSLDKTGRRRNFICSECKEGFYTKHALRQHILRHAGKKYKCGLPGCPTILRTASELKSHRRLVHDNIEKQYPCPNCSYSAKTKTQLRRHRTRHDDSTNAENIQTHSCTYDSCNFKTKISSHLRRHMRLHTGSKPYKCRHCSYASNTLENLRKHILSTNLHPGKTIYACDFCKGKTSKPFCTNFSKELRAHLLEAHAKDFPTPNDANTYVLGIFSANSSTNASTSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -