Basic Information

Insect: Formica exsecta
Gene Symbol: -
Assembly: GCA_003651465.1
Location: NW:509750-513292[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00067 0.045 13.6 0.6 1 23 118 141 118 141 0.90

2 12 0.0073 0.49 10.3 4.6 2 23 264 286 264 286 0.91

3 12 4.1 2.8e+02 1.7 7.6 3 23 430 451 429 451 0.95

4 12 0.69 46 4.1 3.2 1 23 502 525 502 525 0.93

5 12 5.4e-05 0.0036 17.0 0.2 2 23 573 595 572 595 0.96

6 12 0.0008 0.054 13.3 0.1 3 23 619 640 617 640 0.93

7 12 0.0054 0.36 10.7 3.6 2 23 699 721 698 721 0.96

8 12 0.072 4.9 7.2 4.2 3 23 736 757 734 757 0.92

9 12 0.00018 0.012 15.3 0.1 2 23 804 826 804 826 0.94

10 12 0.034 2.3 8.2 0.3 1 23 905 927 905 927 0.98

11 12 0.053 3.6 7.6 1.2 2 23 941 963 940 963 0.93

12 12 0.0047 0.32 10.9 0.8 1 23 1037 1060 1037 1060 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00067	0.045	13.6	0.6	1	23	118	141	118	141	0.90
2	12	0.0073	0.49	10.3	4.6	2	23	264	286	264	286	0.91
3	12	4.1	2.8e+02	1.7	7.6	3	23	430	451	429	451	0.95
4	12	0.69	46	4.1	3.2	1	23	502	525	502	525	0.93
5	12	5.4e-05	0.0036	17.0	0.2	2	23	573	595	572	595	0.96
6	12	0.0008	0.054	13.3	0.1	3	23	619	640	617	640	0.93
7	12	0.0054	0.36	10.7	3.6	2	23	699	721	698	721	0.96
8	12	0.072	4.9	7.2	4.2	3	23	736	757	734	757	0.92
9	12	0.00018	0.012	15.3	0.1	2	23	804	826	804	826	0.94
10	12	0.034	2.3	8.2	0.3	1	23	905	927	905	927	0.98
11	12	0.053	3.6	7.6	1.2	2	23	941	963	940	963	0.93
12	12	0.0047	0.32	10.9	0.8	1	23	1037	1060	1037	1060	0.98

Sequence Information

Coding Sequence: ATGTCATCGAGCATGACATCGTCGCACgagccgacgacgacgatggcaGAGGCAGAGCTGGACAGCGACGGTTCGAGTTGCGGCGAGCGCGACACATGGAAGCGCGTCCGCGGCGATTCCGCCGATCTCGGTGTCGGAACCAAAAAGCGTCGGAAACAAGCCACACCGGTAAGATTCTCGTCCAGCATAGCGACAGGTGCGCACGAGGATGCGTGCGAGGACGAGCGCGAGGACGAGGATAGCGAAGGTAAGCCGTCATCACGATCGCCATTGCTGAGTAACGAGCATCACCATCATCAACACCACCATCATCATCAGCTGTCGTTGAAAGACGAGAATCTTAACAACGAGTTCCGTTGCCAGCACTGCGGCCGGTTCTTCGATAGCGATGAGATGCTCAACGTCCACGTGGACGGCGAGCACGGTAGCGCGAGTCAGGCGACACCGGGTGTCACCGTCAAAATAGAACCGGCGCAGCAGCTGGATCAGACTAATGATGGTCCTGTTAACCTCCTAAGCGTCAAGAACTTCGCGACTACGTGGCTGGCGTCCGGCAGTCAGCAACACGTGCAATCGCAGACGCAGATGCAATCGCAAAGCGAGGAATCGTGGTCAGGTGGTCCGGTCAATCAGATCGTCACAATGACCAATAACTTGCAGGCGCTCTCGGGTTTTCCTGGTACTCTCGCGCAGTATCTACCTTTACCGGGTTTTCCCTTACCTGATCCCCAGCAAGTTCCAAGATCCTCCCTCGGTCCGGTGCCGGTCAAGATTTTTAATCCGGACGCGTACTGCGACTTGTGCAACAAAGAGTTCTGTAACAAATATTTCCTGAAGACGCACAAGGCCAACAAACACGGGATCTACGTGGACTCGCCGGCGCCGAGCACAGCTCTGGATGCTGTTAATATGTTTGGCGCCACAAACTTTCACGCAGCTAACACGAGCGTGAAGCTGGAACCATCGACGACGCCGCCGCAGAAACGTTTCCGCAACGAAGAATCTGCGATAAAAAAGCAGAAGCAAAAAAATGAGTCATCGATGGATCAGCAATCGGACGGTCAACAGATCTCTCTGTCACAGAACGAGGAGGACCAGGAGACGCCGCGCGATAGTCCCAGCGGTATGGAAGCGCTTCTTAAGCAGGAATATGGCGTCGAACAGGAAGATGCCACTTTCATGCCGGCTCCTAGACATCTCTCACCCCAATCCATTCAACAGGCGCGCGATTCCGGTTTCAGCGTCGATCTCCTGCGTCGTCTGGGCGTCATAAATCCTGAGGCGTTTTGTGAAATCTGTTGCAAGGAATACTGTAACAAGTACTTTCTACGCACGCATAAGATGAAACGACATGGTATCGTCGTGCAAGACAACGAGAAGTCACCTGGCAATCCTGGCGCGGCCATCGCCACATGGCATCAAGTGCAGACTAGTCCGCTGAACCTGATCGTGACCGATACTACCCCCGCGGGTTCGGAGTCCAACGATCGCATCGGCGAAGAGCATGAGTGCAAATCTTGCGATATCCGCTTCCAAACGATCGGCCTATATCAGGCGCATTGCAGGAAGATACACGAGGGCGAAGAACATGGCACGCCGAAACAAGAATATGATCTAGAAAGTTCCGATCAGCGTACCGATTCGATCTCAGAGGATCTCCAAAAGCTGCAGACGATGATCATGCAATTGAACGGTTTGGATTCTGGCAAAGGATTATCCTGTGCCGTCTGCGGTAAAGAGTGCGACTCTAGGTCGGCTCTACGTGTTCATATGGCGACTGAACACGGTGTCGCTAATGATGAAATTTCGTCGCCGCAAGAGACGCCACCTACTCAGCTCATTTCGACTATCTTCTGCACTCTGTGCGAGAAGGATTATCCCAGCCAGGAAGCTCTGAGAAGACACATCAGTGAAGAGCATCAACCTGTCGTGACCAGTGTTATTACGCTATCGACACTTCCACCGACAGTAATCGCTTCTTCCGCTAGTTCGACACCAACTAATCAGACTCTAAACAGTCAAACGACTatgacgacgacaacgacgacgacgatgacggaGAAGAAGATAACGTCAATGACGCCTACGTCCAGCTATTGCGAAATATGCAACAAGGAGCTGTGCAACAAGTATTTTATGAAGACGCACATGCAACGAATGCACGGTATCGAAATTGAAAATGGTGCGCAGATCGGCGGtgttatttgcaatatttgcaaCAAAGAGTTGTGCAGCAAATATTTCTTACGCGTTCACAAGCACAACACCCACGGGATCGTCGATGAGAACACGTCGTCGGCATCAACGTCGAACAAGCAAGAGCCTTACGATACTTCCGGCACAGAAGATTCGGTTTTGAAGCAGGAACTGGGCGATCTTAGTCACAAATACTTTATTCACTTCACCGAGGTGTGTCCGATCTGCAGCCGAAGGTTTCGTAGCATCAAGTGGCTGAAAGCCCATCTGATGGGTGATCATGGCAAAGTTGGAATTGACAAATGGCGCGAATTAGAACAGCAATATCAAGAGACGCCCAGAACCAGCGGCAAAAGTGTCGCTTCAGTAAAAAATATCCAGCAAACGTCGAATCTGAAAATTCCCAATGGCTTCGAGATTATTCAGCAAGTCAAATCGACCGATTGCACGAATCTGGGAAATCAGGTGTTGTCAAATTTATTTGGTTCTTCGTCCGATGAACATCAGCTGAAAAATTATCGTTGCGCCTATTGCAACTTTGCGACCTCCGTGCTGCCGTTACTCTTCCTTCACGAGCGATCACACGTAAGTTTTCAGGAAAACATCGAAGGTGATCGACCGCTGCAGTGCCCGATCTGCTTGCAGGACTTCCATCAACTAGAGCTACTTCATCAGCACCTACTCGCTAAGCATCAAATCCCCACTTTGCTATCGCAATTTCAGCATCCTCTTCTAAATAATTTGAGATCGGATGCTGATGTCAAGGCGAGCGATGCTAAGAACAAAACCGATCAAGATACGATCAAGGACAACCGAGCGGGATGCAGTCCGCAGATTGATCGAAATATTCCCGAGCCCGCGAAGAACCAACGGCAGGATGAAACCGCCGTGCAGGTGACCGCTCATGGCGCGTACAAGTGCGCTCAGTGCGGCTACGCGACGACGAATCTAAATCGGATCAAGAAACACGTGCGGAAAGATCACAAAATGATCGGCGATCCAACGGAGAGCGTGATCGCCGAACTCAGTAAGACTCTGAAAGATGTGGCGAATAAGCAGAAGGTACCGGCCTGTTACGCGATGCCGCAGGACATGAACTCGAACCCCGATAAAACTATTATGCAACCGTTCCTGATCGAGGAGCAGGATCTGATGCAGGCGGGCGCCGAGTCCAGCTCGACGAAGAGATTCGCGCCAGCTCTGGTCTATTTGCCGGTCAAATCCAGAATCAGCAACGCCTTGACCGCTTCCTTCACTCTCACCCCCGCctga
Protein Sequence: MSSSMTSSHEPTTTMAEAELDSDGSSCGERDTWKRVRGDSADLGVGTKKRRKQATPVRFSSSIATGAHEDACEDEREDEDSEGKPSSRSPLLSNEHHHHQHHHHHQLSLKDENLNNEFRCQHCGRFFDSDEMLNVHVDGEHGSASQATPGVTVKIEPAQQLDQTNDGPVNLLSVKNFATTWLASGSQQHVQSQTQMQSQSEESWSGGPVNQIVTMTNNLQALSGFPGTLAQYLPLPGFPLPDPQQVPRSSLGPVPVKIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPAPSTALDAVNMFGATNFHAANTSVKLEPSTTPPQKRFRNEESAIKKQKQKNESSMDQQSDGQQISLSQNEEDQETPRDSPSGMEALLKQEYGVEQEDATFMPAPRHLSPQSIQQARDSGFSVDLLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIVVQDNEKSPGNPGAAIATWHQVQTSPLNLIVTDTTPAGSESNDRIGEEHECKSCDIRFQTIGLYQAHCRKIHEGEEHGTPKQEYDLESSDQRTDSISEDLQKLQTMIMQLNGLDSGKGLSCAVCGKECDSRSALRVHMATEHGVANDEISSPQETPPTQLISTIFCTLCEKDYPSQEALRRHISEEHQPVVTSVITLSTLPPTVIASSASSTPTNQTLNSQTTMTTTTTTTMTEKKITSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTSSASTSNKQEPYDTSGTEDSVLKQELGDLSHKYFIHFTEVCPICSRRFRSIKWLKAHLMGDHGKVGIDKWRELEQQYQETPRTSGKSVASVKNIQQTSNLKIPNGFEIIQQVKSTDCTNLGNQVLSNLFGSSSDEHQLKNYRCAYCNFATSVLPLLFLHERSHVSFQENIEGDRPLQCPICLQDFHQLELLHQHLLAKHQIPTLLSQFQHPLLNNLRSDADVKASDAKNKTDQDTIKDNRAGCSPQIDRNIPEPAKNQRQDETAVQVTAHGAYKCAQCGYATTNLNRIKKHVRKDHKMIGDPTESVIAELSKTLKDVANKQKVPACYAMPQDMNSNPDKTIMQPFLIEEQDLMQAGAESSSTKRFAPALVYLPVKSRISNALTASFTLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00729606;
90% Identity: iTF_00868350;
80% Identity: -