Basic Information

Insect: Formica exsecta
Gene Symbol: ham
Assembly: GCA_003651465.1
Location: NW:286590-347990[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0081 0.55 10.2 0.7 2 23 328 350 327 350 0.95

2 9 0.45 30 4.7 0.1 1 23 357 380 357 380 0.93

3 9 9.9e-06 0.00066 19.3 1.2 1 23 386 413 386 414 0.93

4 9 3.8e-06 0.00026 20.6 2.6 1 23 420 442 420 442 0.95

5 9 1.9e-05 0.0013 18.4 6.0 1 23 448 470 448 470 0.99

6 9 0.00046 0.031 14.1 0.7 2 21 478 497 477 498 0.95

7 9 5.5e-09 3.7e-07 29.6 1.2 1 23 860 882 860 882 0.99

8 9 2.9e-07 1.9e-05 24.2 1.7 1 23 888 911 888 911 0.97

9 9 8.1e-06 0.00055 19.6 3.4 1 23 917 939 917 939 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0081	0.55	10.2	0.7	2	23	328	350	327	350	0.95
2	9	0.45	30	4.7	0.1	1	23	357	380	357	380	0.93
3	9	9.9e-06	0.00066	19.3	1.2	1	23	386	413	386	414	0.93
4	9	3.8e-06	0.00026	20.6	2.6	1	23	420	442	420	442	0.95
5	9	1.9e-05	0.0013	18.4	6.0	1	23	448	470	448	470	0.99
6	9	0.00046	0.031	14.1	0.7	2	21	478	497	477	498	0.95
7	9	5.5e-09	3.7e-07	29.6	1.2	1	23	860	882	860	882	0.99
8	9	2.9e-07	1.9e-05	24.2	1.7	1	23	888	911	888	911	0.97
9	9	8.1e-06	0.00055	19.6	3.4	1	23	917	939	917	939	0.99

Sequence Information

Coding Sequence: ATGAACGGTCTTGATCTGTCCCGTTCCGTCGTGGATTGCAAGATGAACTGCGGAAGCAGCGACGAAGGCGAGGCGACGTCGGGGGCGACAGGCGGGGGTGGCAGCAACGAGAACGCAGACATGGAGGAGAACGGATCGACTCGCAcgagcagcaacagcagcagcaacaacaatcCCGTTTACAGAGACCCGAGATCCCTTCAAGCCCCTGGCGGCGCGCATGAGGTGTCTCAGGATTACAATCAGCAATCGTGGACTACCGCCTATCAGCGGCGCGGCTATTCGCCAGGGATGGAATTACGACAGCGCCATGTCGCGAAGAAGCATCCGCCGTTGACGTTTTTTAAGGAGGAGAGAAAATCGTCCTGGGACTACGGCGAGACGAACGCGCGGAAAGAATACTCGAGATCGCGGGATTACAGCAGCGAGTATCAGGACATGAAGCAGGAGATGAAGCAGGAGATAAAGCAAGAGATAAAGCAGGAGCCCAAGGATCACTCGAGTCGCGAATGGGTGTCACCGATCCCAGCGATCGAGATCGGCGGTTCGGCACCCGATGGCCCGTACGTTCGCGCACGCAAGGACATCCCTCGCGGCGAGAAATTCGGCCCGTACCTCGGCAAATGGGCAGGAGAGCCTTTCAACCCCCGTTACGCGTGGGAGATTTGCATAGCGGACAGCGGAGTGAGAGGCTGGTTGGACGCATCTCACGAGACGAACAATTGGCTGAAATACATTCGAAGTACTGCTAATCCACACGCGGTAAACATGCGCTACGTGCTCAACGGCGGTCAGATGTTGTATGAAACCATTCGCGACATCGTAACGGGCGAGGAGCTTCTTTTGGGTCTTCGGGAGCCGCTTCAGCTGCAGGACATGCTGGGTGAGAATACAACCGAGGATAGAAGCGATCGAGAGACTGCTTCGCAGCACAGCGGAACCGTCGACGAGGACAAGGAGGACGAAGAGGAGGGGGAGACGAGATGCACCGTCTGCGACAAACCGTTCCAAGATATTGAATTattGGATAGCCACTTGGTGACTTGTCACAGATACCCAGCGGAGCAGCACCGTTGCGACAGTTGTCCTCGTGCTTACGCTTGGCGGCCGCTTCTGGTACGGCATCGCGCTATCGTTCACGGTGATCTGAGGAATTATCCCTGCGAGAATTGTCCGAAGTCGAACATCCGGCAGGTCTTCACGGACCCGTCCAATCTACAGCGCCATATCAGAACGCATCACGTGGGTGCCAGGAGCCATGCTTGTACAGAGTGCGGCAAGACCTTTGCGACCAGTTCCGGCCTGAAGCAACACACCCACATTCATAGCAGCGTAAAGCCTTTCCAGTGCGAGGTCTGTTTCAAGTCGTACACGCAGTTCTCGAATCTATGCCGGCACAAGCGCATGCACGCCGACTGTCGCATGCAGATCAAATGCGTTAAATGCGGACAGTCCTTCAGTACGGTAACATCGTTATCGAAGCATAAACGATTTTGCGACTCCACGACTCCGACCGGTCCGCCCGGAGCTATGCCGCAGTTACCGACGCCAACGACAAATCCTTTTCTGGTGTATCCACGACCTCCCGTGAGCCTGCCAGGTGGTCTGCCTTTCTACCCACCTAGTCTGATGGCTCCTTATCCGGGAATCTTTCCGAACGCTCCGAATTTCCTGAATACGCCTCTCCTCTTCCCACCGAAGATCGAGGAAACTGAGAAAAGGAGCGAGAGCCCTTTTCCCAAGAAGGCACGATTTACTCCTCCGACGGTACTATCACAACATAATAAAGTATCTCCTTCTACGGCGGAGGAGGCCACCTCTACCTTCAGGCCGTCTCCGGCTAGACCTCCGGTTCAACCGACTCCGGAGAGCGACGACGACCTGTCCAAGAGGGGAGAAGCGACCAGAAACAACGAGCGAAAAAGAAAAGCCGAAAGCGCATCGAACGTCTCGAAGGAAGAGACGACGGAACAGCCGTTGGATTTGAGGGTGCAGACCAGGAAACAGGACACCGCTTCGAGAGCTTCGAGCAGGAAGAGTTGCACACCATCGCCGGCGCCGATGCCGAGGGAGGAGACACCCGTGTCGCCTGATCCCCCGAAACCGGAAGAAGACACCACTGCTCCGACGCTCATGGAAATCGAGTCCAAGGAAGTCCCCAACAGCCCCCAGCAACTGAGGACTAGCTTGCCGACCGAACAACCGCCGACAAATACGCCGCCGCATATGGCTTATCCCAGACCGATACATCCGATGTTCCTCGAGACGATGTATCGCGGCCCGACGGGGACTTTTCCGGGGTTTCCCGGCGCGCCTCCGCCCCCCGGCGCGGCAGCCCCGGAATCCAGACTGATACCTCCGCTCCCGCCTTTCGGTCCACCGCGCGGGCTTCCTTTTTTAGGCTCGCTTATGAACGGGCTCAGCGGCGCTAGGCCAGGAAGTGGTTTTGATTTGCTCGCCCGGCCGCCGCTGAGCGCGTTCCCTGGAGTAAAACCGTTTCAGGAGGCCGTGATAGCGCCTCATCACcaccatcatcatcaccaTCATCACCATGTCCACGGCAAGATGAAGGATCGTTACTCCTGTAAGTTCTGCGGCAAGGTGTTTCCCCGCTCGGCCAATCTCACGAGGCATCTGAGAACGCACACCGGCGAGCAGCCGTACAAGTGCAAGTATTGCGAGCGATCCTTCAGCATCTCGAGCAATCTGCAGCGGCACGTCCGGAACATCCACGACAAGCAACGGCCGTTCAAGTGCCCGCTCTGCGAGAGGTGCTTTGGCCAGCAGACCAATCTGGACCGGCATCTTAAGAAGCACGAGGCCGACGACGGCAGCGGCGTGGTCTCGGTCGCCGACTCGCCCGGCAGCAGCAACGAAAACGAGCGGGAGGACACGTACTTCGATGAGATTAGATCCTTCATGGGCAAGGTCACCTACGGCGGCGAGGGTGGCTATGGACTGCCCCATCACCCGGCCTATATTCCCAGTCGGCTACGAGAGATGAACGAGAATAAGATGGTCGAGTATGACGAGGACGAGGATAGCGAGGAGGGTGCGTCTCCGTTAGAGGAGACGGACGGAATGTCGCCGATCGAGGCCAAGGAGTCGCCATCGCCCTCGCAGTACGACCTGAAGCTTAGGGAGAAGCAGGAGCTGCTCAATAACAACACTGCTGAGCCGGTGATCGAGATCTCGACATAG
Protein Sequence: MNGLDLSRSVVDCKMNCGSSDEGEATSGATGGGGSNENADMEENGSTRTSSNSSSNNNPVYRDPRSLQAPGGAHEVSQDYNQQSWTTAYQRRGYSPGMELRQRHVAKKHPPLTFFKEERKSSWDYGETNARKEYSRSRDYSSEYQDMKQEMKQEIKQEIKQEPKDHSSREWVSPIPAIEIGGSAPDGPYVRARKDIPRGEKFGPYLGKWAGEPFNPRYAWEICIADSGVRGWLDASHETNNWLKYIRSTANPHAVNMRYVLNGGQMLYETIRDIVTGEELLLGLREPLQLQDMLGENTTEDRSDRETASQHSGTVDEDKEDEEEGETRCTVCDKPFQDIELLDSHLVTCHRYPAEQHRCDSCPRAYAWRPLLVRHRAIVHGDLRNYPCENCPKSNIRQVFTDPSNLQRHIRTHHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKSYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTTPTGPPGAMPQLPTPTTNPFLVYPRPPVSLPGGLPFYPPSLMAPYPGIFPNAPNFLNTPLLFPPKIEETEKRSESPFPKKARFTPPTVLSQHNKVSPSTAEEATSTFRPSPARPPVQPTPESDDDLSKRGEATRNNERKRKAESASNVSKEETTEQPLDLRVQTRKQDTASRASSRKSCTPSPAPMPREETPVSPDPPKPEEDTTAPTLMEIESKEVPNSPQQLRTSLPTEQPPTNTPPHMAYPRPIHPMFLETMYRGPTGTFPGFPGAPPPPGAAAPESRLIPPLPPFGPPRGLPFLGSLMNGLSGARPGSGFDLLARPPLSAFPGVKPFQEAVIAPHHHHHHHHHHHVHGKMKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHDKQRPFKCPLCERCFGQQTNLDRHLKKHEADDGSGVVSVADSPGSSNENEREDTYFDEIRSFMGKVTYGGEGGYGLPHHPAYIPSRLREMNENKMVEYDEDEDSEEGASPLEETDGMSPIEAKESPSPSQYDLKLREKQELLNNNTAEPVIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01407591;
90% Identity: iTF_00729533;
80% Identity: -