Basic Information

Insect: Formica exsecta
Gene Symbol: -
Assembly: GCA_003651465.1
Location: NW:241680-244657[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00028 0.019 14.8 0.1 2 23 159 180 158 180 0.96

2 11 0.0027 0.18 11.7 5.0 2 23 249 270 248 270 0.95

3 11 2.3e-05 0.0015 18.2 2.9 1 23 406 428 406 428 0.98

4 11 6.3e-07 4.2e-05 23.1 0.6 1 23 434 456 434 456 0.98

5 11 2.4e-07 1.6e-05 24.4 0.9 1 23 462 484 462 484 0.98

6 11 0.0001 0.007 16.1 1.6 1 23 497 519 497 519 0.98

7 11 1.9e-08 1.3e-06 27.9 1.3 2 23 526 547 525 547 0.98

8 11 1.3e-07 8.7e-06 25.3 1.6 1 23 553 575 553 575 0.98

9 11 6.4e-07 4.3e-05 23.1 1.8 1 23 581 603 581 603 0.96

10 11 4.4e-05 0.003 17.3 5.2 1 23 609 631 609 631 0.97

11 11 1.2e-06 8e-05 22.2 3.9 1 23 637 659 637 659 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00028	0.019	14.8	0.1	2	23	159	180	158	180	0.96
2	11	0.0027	0.18	11.7	5.0	2	23	249	270	248	270	0.95
3	11	2.3e-05	0.0015	18.2	2.9	1	23	406	428	406	428	0.98
4	11	6.3e-07	4.2e-05	23.1	0.6	1	23	434	456	434	456	0.98
5	11	2.4e-07	1.6e-05	24.4	0.9	1	23	462	484	462	484	0.98
6	11	0.0001	0.007	16.1	1.6	1	23	497	519	497	519	0.98
7	11	1.9e-08	1.3e-06	27.9	1.3	2	23	526	547	525	547	0.98
8	11	1.3e-07	8.7e-06	25.3	1.6	1	23	553	575	553	575	0.98
9	11	6.4e-07	4.3e-05	23.1	1.8	1	23	581	603	581	603	0.96
10	11	4.4e-05	0.003	17.3	5.2	1	23	609	631	609	631	0.97
11	11	1.2e-06	8e-05	22.2	3.9	1	23	637	659	637	659	0.99

Sequence Information

Coding Sequence: atgtatatttatatctatgcaCGCGGAGACTTTCCGCGAAAACAGAATTTGACAGAATTCCGAAAGCGGTTAAAGAAAGAGGACGgtggaaaaatgtttatagTGACGAAAGAGATTGACAGCGAGAACATTAGTAAATTGTGTCGCACATGCTTGAGGGAAGACGGCGACAAAATGGTATGCTTGTTCGTGGGCCCGGCTGGTTCGTCACTCGCCGCTAAATTACGATCGCTTTCTTGCTTGGAGGTCTGGCAAGGAGATGGTTTACCGGAGAAAATGTGCGATCGTTGCGTCACCAGAGCAGAGTCGGCTCTTTTATACAGAGAACAATGCCGTGCAGCAGACAGAGCTTTGCGACAAGCAGCGTTGAAGgtATCTGGACTAACGTCGTACACTACCGTTTCTGGCTGCAAACTCTATCAAAATCAACAAAATCAAGGATTTATACCTGTGCAAAATTCTCACAAGACACTAAAGTGTGTGGAATGTGGTGCTGTGTTTACTAATTATCAAGAACTTTATGCCCACAATCGATTGCACTTGCCTTTTATACAGGATAACATACCTATGCAACACATGCACATTGTGGAATCTCAAAATCCGTATCTCAATTTTACTCATGTTGGGTCAAACTTTGCCAATGATAGTAgcataaatatgcaattatcTCCATCAGTCAGATCAAATATGGTGCATGCTATGTCATTGAACGAAGAAAACTCGAGTCGCGCTGCTTGTGCCTTACATTGTTCTTTGTGCAATCATACTTTTACCAATAGGAGACAATTAATAAGtcataatataacacatagtACGGAACATGTTGATATATCGTgcgataatgaaaatatagagATATGTGAAAATTCTAATCATATTCCACAAAATTTAAGTTACGAAAGGTCCATTCATTCTGTTGATAATCCCATTCAGAATCTATCGTATCAAAGATCCACTGTGGATGATAATGACggaatgcaaaatataaattttccagaGAATATTGATCTGGATGGTGTCCAAGAGAATAGTTCGGAGCGCATACAAAATGTAACAATACACTCTGAAAATAACGTATCAATCAcggaaaatttgagatttatGAAGGCACCTGAAAAAGATAGGCAACTCGTAATCGAATATCACGGATGTTCAACTGATAATAGTTATAAACAATCCGATATAAAAAACACGGAAGATGTTCACGCGAAGAAGCACCAGTGTGAAGTATGtttgaaacaattttcacaaaaatctaaattatttgcTCATCAATTGTCTCATTCCGGTCAACAACCGTTCAAATGCCTGAGCTGTGGCAAAGCTTACGCATCAAAGAGCAAACTCAACGCGCACATGAGATTACACACCAAAACCAATGTGCATCAATGTAAGGtatgcgataaaatattttcatatccgTCGTATCTAGAGGAACACATAAAAGTACATAATAAAAGTGATAGCGATAGATCACAGAACAAGGAATTTGAATGTAGCACTTGTAATAAACGTTTCCAACttttaaagaatttgaaaGCTCACGAAAGACTTCATACTGGAAAAGGATTAGTGCAATGTGAgatttgtgataaaaaatttagtcaaaattataatttaaaaatgcatctACGAACACACAAGACGTCAAGGGTGCACAAATGCGAATATTGCGACAAGCGTTTTGTACAAAAAGGTAATTTAGTTGAACATTTACGGATCCACACTAAAATGAAGCCTTTCGTGTGTAAATTATGCGGTAAGAGATTTGCGCAATCAAGTCATCTTAAAAGCCATGAAGCCTCGCACGGCGCCTTGCGACAACATCAATGTCGATTATGCGGAAAGAGATTTAAACTAGCTAATCATTTAAAACggcatttaaatttacatactgGTTCAAAgatgtataaatgtaatcaATGTAACCAAATGTTTTCACAGTCTTTCAGTCTGACAAGACATTTAAAAAGGCACAATgaatcacatatataa
Protein Sequence: MYIYIYARGDFPRKQNLTEFRKRLKKEDGGKMFIVTKEIDSENISKLCRTCLREDGDKMVCLFVGPAGSSLAAKLRSLSCLEVWQGDGLPEKMCDRCVTRAESALLYREQCRAADRALRQAALKVSGLTSYTTVSGCKLYQNQQNQGFIPVQNSHKTLKCVECGAVFTNYQELYAHNRLHLPFIQDNIPMQHMHIVESQNPYLNFTHVGSNFANDSSINMQLSPSVRSNMVHAMSLNEENSSRAACALHCSLCNHTFTNRRQLISHNITHSTEHVDISCDNENIEICENSNHIPQNLSYERSIHSVDNPIQNLSYQRSTVDDNDGMQNINFPENIDLDGVQENSSERIQNVTIHSENNVSITENLRFMKAPEKDRQLVIEYHGCSTDNSYKQSDIKNTEDVHAKKHQCEVCLKQFSQKSKLFAHQLSHSGQQPFKCLSCGKAYASKSKLNAHMRLHTKTNVHQCKVCDKIFSYPSYLEEHIKVHNKSDSDRSQNKEFECSTCNKRFQLLKNLKAHERLHTGKGLVQCEICDKKFSQNYNLKMHLRTHKTSRVHKCEYCDKRFVQKGNLVEHLRIHTKMKPFVCKLCGKRFAQSSHLKSHEASHGALRQHQCRLCGKRFKLANHLKRHLNLHTGSKMYKCNQCNQMFSQSFSLTRHLKRHNESHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016013;
90% Identity: iTF_01254982;
80% Identity: iTF_00729512;