Basic Information

Insect: Formica aserva
Gene Symbol: ush_1
Assembly: GCA_037039905.1
Location: JAXRKO010000017.1:3662372-3669383[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0061 1.2 11.2 0.0 3 20 251 268 249 270 0.92

2 8 4.5e-05 0.009 17.9 1.3 1 23 302 324 302 324 0.98

3 8 0.1 21 7.3 1.6 3 20 370 387 369 389 0.93

4 8 0.016 3.1 9.9 4.4 2 21 604 623 603 624 0.94

5 8 0.072 14 7.8 0.0 3 20 653 670 651 672 0.91

6 8 0.018 3.5 9.7 0.0 2 23 711 732 710 732 0.95

7 8 0.0095 1.9 10.6 1.4 1 23 738 760 738 760 0.99

8 8 0.1 20 7.3 0.5 3 21 859 877 858 878 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0061	1.2	11.2	0.0	3	20	251	268	249	270	0.92
2	8	4.5e-05	0.009	17.9	1.3	1	23	302	324	302	324	0.98
3	8	0.1	21	7.3	1.6	3	20	370	387	369	389	0.93
4	8	0.016	3.1	9.9	4.4	2	21	604	623	603	624	0.94
5	8	0.072	14	7.8	0.0	3	20	653	670	651	672	0.91
6	8	0.018	3.5	9.7	0.0	2	23	711	732	710	732	0.95
7	8	0.0095	1.9	10.6	1.4	1	23	738	760	738	760	0.99
8	8	0.1	20	7.3	0.5	3	21	859	877	858	878	0.92

Sequence Information

Coding Sequence: ATGGAGGAGGTGGTTGGGGAGGATGAGGAATGGAGTGACTCGGAGAAGACCCCGTCGGTGAGCAGCGGCGTGGACGGTGGCGGATCCGCGGTGTCGAGTCCAATCGCGCCACCGGTGGTTGAAGAAGACTCGAGTTTACCGCCCCCTCCGAGACTCAACCCCCCATCATCCTCGACCAGCTCCTCCGCCAGCGAAGATATCAGACTGCGCCTAAGTGTGCTTTCGGAGGATACTAGGAAGCGTCTGGTCAGTCTTACCGAGGACATTGAGATTGCCAGGGGTATACGAGACCGCCATGCGCCGTCGTCCAGAAGCGCGCGGACGCGGGAGTCGAGTCCCAAGGACGTCGACGAGGATCAACAGGCTGTTAAGGAGGACGAGTGCCAGCCGAGGCCGTCGTCCTCGTCATCATCGTCCACCGCCATCAGGAGACGGGACTCCGTCTGTCGCAGGGACTCGGAGGACTCCGTCACCGCGGTGGCCACCGAGGCCAAGAGGATGAGACTCGACGACGAGGCAGCACCAAGACTGAGACTCAATGCTAGTCTGGCGACGGATCCCGCACTGCGACCCGCCGCTGTCGCCGCGCTTACCGTGAAGCCCGAGAACACGTCGCCGCCGAACCAAACGCCGCCGCTTCCAGCCGGGCTTCAGAACGCCATCGCATCGGGTCGGCTGTTCGTCCTGCCGACCGATGGCAAGGAAACGATCACGGTGGAGCCGGCCAGGCCGCCACCGACCGCCCTGATCTGCCCGCCGTGCGGCATCCGGTTCAGTTCGGCGAGCACCCTCGAGGCCCATCGTACCTTCTACTGCGCCCATCGACCGCGCGCGGACGAAGACGCGACgaacgacgaggacgacgacggcAAGTCCGGTGGCAAGTTCGAGGTGCGAAAGGCGTATGCGTGTCCGCACTGCTCGTACAGCGCCGACAAGAAGGTGTCTCTGAATCGTCACATGCGGATGCACGCGGCCTCGCCGGCGCCGTCGACGATACCAACGGCAGCGACGGCGGTGTCGGCGAACCCGAACTCCTCGACGGGCAACCCTCCCGGTCAGACCGCCGCATCTAACGGTTCTTTGAACGAGGAGGCCGAAAGATACTGCAGGAATTGTGACATTAGGTTCAGCTCCTTGAAGACGTACAGGGCGCACAAGACACATTATTGCAGCACCAGGCACGTGGTGAAGGACACGTTACCGACGCCCACGGCAACGTCGGCGTCCTCGGTGAAAGCATCACCGCCGACCAGCTCGAGTCCCGGTGATTCGCCGCCTCCTCAGCCGTGCCTGGCGCTACCTACCAATCCCATCCTTATCGTACCATATTCGTTGTTTCGCGGCGCGAGCGTCCTCGCCGCGCCGGCACTTCCGGCCCCTGACACAGCGTGCTTCCTTCTGCCAAACGGTTCCCTTCAACCAATGACGAGGGGTCTCACTCCGACAACACAGAACGCGGTAGTAGAGCCGCCAGCTGTACTAAGGGCGGCGAATAAACCCTCGACGCCAGCGTCGGTTGTGGCAACATCCACGTCGCCATCTGCTTCGGCGCCCCTTGATCTCAGCGTACGCAGATCACCGGTGCACCAAGACGAGAAGGAGAACAGGATGTCGCCAACACCGTCGTCCCTGCCGCCACCTCCGGGCAGTCCCAGATCCAGGGGCAGCGGTAGTCCTAGAACGAGATCCATCGGTCCGGCGCAGACGGTCGCCGTCGCGCCACCCCCGCCCACGGAGCTCGCCCTGAGACTCGCCGAGCTGCCGCCACCCCCTGTTCCCGGAGTACTCGTCAAACAAGGCGTCTCCAGGTGCAAGGAATGCAATATCGTGTTCTGTAGACACGAGAATTTTGTCGCTCATAAGAAGCATTACTGCCAGGCAAGGGAGACGACGGTGAGCAACAGTCCACCACCCCCTGGCACGCCCCCGCCACCCATCTGCGTCCAGCTCATCTGCGCCGCGTGCGGCATCAAATTCGCTTCCATGGACAATCTGGTCGCTCACCAGGCGTTTTATTGTCCTAAAAGGCCCGAACCACAGGAGCATCACACGCGGTGTTCTAAGTGCAAGGCGATAATAGAACCCGGCGGCAATCATACCTGCGCCAGTGGTACGACTGGTGGTTGGCGATGTCCGGTTTGCGGTGCCGTCAGCCCCACGGCCGGTGCTGCCCAGCGTCACATGGATGCCCACCAAGGTGTCAAGGCCTTTCGATGCACGATCTGCCGTTACAAAGGCAATACTCTACGCGGTATGAGGACCCATATAAGGATGCACTTTGAGAAGCGCGGCACTGATCTACAGGAAGAGAATTACATAACGTGCGTACTGGATGACGAGGCGACGCTCCCGACACCGGAGCCTGCGGCCGCCACGACGCCGGAGGAGATTCCCGCAGAGATCCAGATGAATGGCAAGACGGAGATACGGAAGAGCCCGcaaccgccgccgccgccgccgccgccaccgcctcCGCTGGTGCCGGCAATCGCTAGCAAGGTGAAGCAGGAACGCGAAGACACGCCACCGCCGGAGGAGAGTTTGGACCCCAGCAAAAGCGGTCCTCGCTACTGTCGCTCCTGCGACatcagttttaattatttgagcACCTTTATCGCTCATAAGAAGTTTTACTGCTCGAGTCACGCCGGTGAGgcgagtaataataataataacaacaacaataacaataatgcTAGCGGTCATCCGACACCTCCGCCAACTGGCAGGACTGAGGCGTCGGTGCTGTAA
Protein Sequence: MEEVVGEDEEWSDSEKTPSVSSGVDGGGSAVSSPIAPPVVEEDSSLPPPPRLNPPSSSTSSSASEDIRLRLSVLSEDTRKRLVSLTEDIEIARGIRDRHAPSSRSARTRESSPKDVDEDQQAVKEDECQPRPSSSSSSSTAIRRRDSVCRRDSEDSVTAVATEAKRMRLDDEAAPRLRLNASLATDPALRPAAVAALTVKPENTSPPNQTPPLPAGLQNAIASGRLFVLPTDGKETITVEPARPPPTALICPPCGIRFSSASTLEAHRTFYCAHRPRADEDATNDEDDDGKSGGKFEVRKAYACPHCSYSADKKVSLNRHMRMHAASPAPSTIPTAATAVSANPNSSTGNPPGQTAASNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTLPTPTATSASSVKASPPTSSSPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPALPAPDTACFLLPNGSLQPMTRGLTPTTQNAVVEPPAVLRAANKPSTPASVVATSTSPSASAPLDLSVRRSPVHQDEKENRMSPTPSSLPPPPGSPRSRGSGSPRTRSIGPAQTVAVAPPPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARETTVSNSPPPPGTPPPPICVQLICAACGIKFASMDNLVAHQAFYCPKRPEPQEHHTRCSKCKAIIEPGGNHTCASGTTGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDEATLPTPEPAAATTPEEIPAEIQMNGKTEIRKSPQPPPPPPPPPPPLVPAIASKVKQEREDTPPPEESLDPSKSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNNASGHPTPPPTGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00015644;
90% Identity: iTF_01255115;
80% Identity: -