Basic Information

Insect: Formica aserva
Gene Symbol: -
Assembly: GCA_037039905.1
Location: JAXRKO010000002.1:10871851-10872918[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.2e-05 0.0024 19.7 0.4 2 23 74 95 73 95 0.96

2 9 0.014 2.7 10.1 4.0 1 23 97 120 97 120 0.97

3 9 0.033 6.5 8.9 3.5 1 23 125 148 125 148 0.95

4 9 5e-06 0.00099 20.9 2.5 1 23 154 177 154 177 0.97

5 9 0.0069 1.4 11.0 0.8 3 23 185 206 183 206 0.95

6 9 7.1e-05 0.014 17.2 0.2 1 23 211 233 211 233 0.97

7 9 2.5e-06 0.00049 21.8 0.1 2 23 240 261 239 261 0.97

8 9 1.9e-06 0.00037 22.2 0.1 1 23 267 289 267 289 0.98

9 9 0.00023 0.046 15.6 0.8 1 23 295 317 295 317 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.2e-05	0.0024	19.7	0.4	2	23	74	95	73	95	0.96
2	9	0.014	2.7	10.1	4.0	1	23	97	120	97	120	0.97
3	9	0.033	6.5	8.9	3.5	1	23	125	148	125	148	0.95
4	9	5e-06	0.00099	20.9	2.5	1	23	154	177	154	177	0.97
5	9	0.0069	1.4	11.0	0.8	3	23	185	206	183	206	0.95
6	9	7.1e-05	0.014	17.2	0.2	1	23	211	233	211	233	0.97
7	9	2.5e-06	0.00049	21.8	0.1	2	23	240	261	239	261	0.97
8	9	1.9e-06	0.00037	22.2	0.1	1	23	267	289	267	289	0.98
9	9	0.00023	0.046	15.6	0.8	1	23	295	317	295	317	0.97

Sequence Information

Coding Sequence: ATGGACCCTCTGAACGTCGTGGACATCAATAATTCGGAACACTTGCTGGTCGAAAGCATAGAGTGCACGCCAGAGTATGACTCGCTACCAAATAAGCTCAAACGACATATTActagaaaaagaaagatgcCGAAACAGGAGAATTATTCTACGGGAAAAGATACGAAAAAGCAATATCACGATCAGAACAAAGTCAAAAGGAAACCCGAGCTCTTCTTGGAATGTGCCACATGTGGCAAACGTTTCAGCGACAAACCTACTATGATAAAACATATGAGCCAGCACAAGTACCAGTGCCAAACCTGTTGCCAGAGTTTTAGTCTGAAGCGAGACATGAAGCGTCACATCGAAAAGGTTCATGGACCTCTACTCTATCCCTGCAGCATTTGCGAATATAAGAGCAACAATAAATGCACCTTAAAGGATCACTTCATACGGAAGCACACCAGTAGCTTCCAGTATACCTGCAAGGATTGCAAGAAGCAGTTCAAGATCAAGAACGATTTGAAGCAACATATGAATCAAGTGCATAGTGGCGCACCACCTATCATTTGTAGTATCTGCGGACACGCATGTAAAAACGTGCCTGCCATTAAGGCACACATGAAATATCGACATTACAAGCCAGCTTACGAATGCAAGATATGTAAACGCGGTCTGACCACGCAAGAGAATCTGGACCAGCATCTAATCTGGCACGAACGGAAGGAGAAGGTCGTCTGTCCTACTTGCGGCAAGACTTTCGGCCAAAAGAGGGACTTGGATCTTCATTTGAGGATCCATCAAGGTATCCGGCCATTTTCCTGTCCAGTCTGCGGCAAGACTTTTCCTAGAAAGACCGCGCAAGAGCAACACATATTGATTCACACCGGCAAGAGACCGTATATTTGCGACATCTGCGGCCAAACTTTTGCACAGAAGCCAGGACTCATTTGCCACAGGAAACGTCATCCTGGACCACTGCCGCCGTTACCTGTAgtatctattaaaaaaataatcatggACTTTACGCAAGAACTGGGAGTTCCTCTTACGCAACAACAAGATAAAATAACGTTAGATAGCTAA
Protein Sequence: MDPLNVVDINNSEHLLVESIECTPEYDSLPNKLKRHITRKRKMPKQENYSTGKDTKKQYHDQNKVKRKPELFLECATCGKRFSDKPTMIKHMSQHKYQCQTCCQSFSLKRDMKRHIEKVHGPLLYPCSICEYKSNNKCTLKDHFIRKHTSSFQYTCKDCKKQFKIKNDLKQHMNQVHSGAPPIICSICGHACKNVPAIKAHMKYRHYKPAYECKICKRGLTTQENLDQHLIWHERKEKVVCPTCGKTFGQKRDLDLHLRIHQGIRPFSCPVCGKTFPRKTAQEQHILIHTGKRPYICDICGQTFAQKPGLICHRKRHPGPLPPLPVVSIKKIIMDFTQELGVPLTQQQDKITLDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00869092;
90% Identity: iTF_00869092;
80% Identity: -