Basic Information

Insect: Formica aserva
Gene Symbol: BIB
Assembly: GCA_037039905.1
Location: JAXRKO010000002.1:10851340-10852344[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.6e-05 0.0091 17.9 0.3 1 23 57 80 57 80 0.97

2 9 3.9e-06 0.00078 21.2 0.9 1 23 86 108 86 108 0.98

3 9 0.0025 0.5 12.4 6.1 1 23 117 140 117 140 0.95

4 9 0.0019 0.37 12.8 2.4 1 23 146 168 146 168 0.96

5 9 1.1e-05 0.0022 19.8 2.3 1 23 173 196 173 196 0.96

6 9 0.01 2 10.5 3.4 1 23 202 224 202 224 0.97

7 9 1.2e-07 2.4e-05 26.0 1.1 1 23 228 250 228 250 0.99

8 9 9.3e-05 0.018 16.9 3.9 1 23 256 278 256 278 0.99

9 9 1.3e-06 0.00026 22.7 1.1 1 23 284 306 284 306 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.6e-05	0.0091	17.9	0.3	1	23	57	80	57	80	0.97
2	9	3.9e-06	0.00078	21.2	0.9	1	23	86	108	86	108	0.98
3	9	0.0025	0.5	12.4	6.1	1	23	117	140	117	140	0.95
4	9	0.0019	0.37	12.8	2.4	1	23	146	168	146	168	0.96
5	9	1.1e-05	0.0022	19.8	2.3	1	23	173	196	173	196	0.96
6	9	0.01	2	10.5	3.4	1	23	202	224	202	224	0.97
7	9	1.2e-07	2.4e-05	26.0	1.1	1	23	228	250	228	250	0.99
8	9	9.3e-05	0.018	16.9	3.9	1	23	256	278	256	278	0.99
9	9	1.3e-06	0.00026	22.7	1.1	1	23	284	306	284	306	0.98

Sequence Information

Coding Sequence: ATGGAAAACGAAACAGCGAAGAATGCCATTGATAAGCAGCGTGATGAAAATGAAACAATGGAAGATGTCGTCAACAAACAGCTCATTGAAGTCGACGAGAAATTGTCTTGTATCAACGAAGAACGCAGAACAGAAGATGTACTTTACAAGAAGCTTACTAACGGGGATTATATATGTGATATCTGTCAGATAGTGTTTGAACAAAAGAGTAAAATCCTGCGCCACATTATGAGCAAGCACAGTTTTCATCGTCCCTTCAGATGTGCAGTTTGCGACAAGGGTTTTAAATATAACTACGATTTGAAGATGCATCGACTTATTCATCAAAAAGTGGATTCTAATTTGTTGCATTGTTGCAGTAAGTGCAATTATCGCGGTAGAACGAAgagcaatttgaatgcgcatTACATCAGGCGACACACCGACGAGTACAAATTCGCCTGCGAACATTGTGGTAAACGCTTTAAGATAGAATGGGATTTTAAATTCCATCTTAACACGCACGATGGTTCACAGCACATGTGCGATATTTGCGGTAGATTCTATACGAGCAATTATTCCCTGTACAAACACAGGAAAGTGGCACACTTGAATGATTACAAGTTTCATTGTAACGTATGCAATAAAAAGCTGCTAACGCAGAAGAATCTAGATAGTCATATGCAGCAACACGATAAAACTTATGAGTGTAAGGAGTGTGACAAGGTATTTGCTTCAAAGAGATATTTAACCAACCACGCAAAGACGCACACAAGCGTCAAGCCCTATACATGCCATGTTTGTGAAAGGAGTTTTAGAACATCGAATATGAGAAACATGCATTTAAATACGCATTCGGCAGAAAAACCGTATATTTGTGACTTGTGCGGGCAAACATTCAAGAGAAGATACGACATGATTGTGCATCGTAGGAAACATCCAGATGCACACTTATCGTCACTACCTGTGCCTCTtggaaaaatacaaaatagtTTGGGTACTATGGATAGTATGGAATCTAAATAA
Protein Sequence: MENETAKNAIDKQRDENETMEDVVNKQLIEVDEKLSCINEERRTEDVLYKKLTNGDYICDICQIVFEQKSKILRHIMSKHSFHRPFRCAVCDKGFKYNYDLKMHRLIHQKVDSNLLHCCSKCNYRGRTKSNLNAHYIRRHTDEYKFACEHCGKRFKIEWDFKFHLNTHDGSQHMCDICGRFYTSNYSLYKHRKVAHLNDYKFHCNVCNKKLLTQKNLDSHMQQHDKTYECKECDKVFASKRYLTNHAKTHTSVKPYTCHVCERSFRTSNMRNMHLNTHSAEKPYICDLCGQTFKRRYDMIVHRRKHPDAHLSSLPVPLGKIQNSLGTMDSMESK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00867660;
90% Identity: iTF_01245404;
80% Identity: -