Basic Information

Insect: Formica aserva
Gene Symbol: -
Assembly: GCA_037039905.1
Location: JAXRKO010000001.1:15485053-15488094[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00029 0.057 15.3 3.9 1 23 233 255 233 255 0.98

2 11 0.025 5 9.2 11.8 1 23 261 283 261 283 0.95

3 11 6.7e-05 0.013 17.3 6.6 1 23 289 311 289 311 0.99

4 11 0.00046 0.092 14.7 1.6 1 23 317 339 317 339 0.95

5 11 1e-06 0.0002 23.1 1.8 1 23 345 367 345 367 0.97

6 11 3e-05 0.006 18.4 1.1 1 23 373 395 373 395 0.97

7 11 0.00094 0.19 13.7 1.5 1 23 400 422 400 422 0.97

8 11 2.1e-05 0.0041 18.9 0.0 1 23 428 450 428 450 0.97

9 11 0.00011 0.021 16.7 0.1 2 23 462 483 461 483 0.96

10 11 1.8e-06 0.00036 22.3 2.0 1 23 549 571 549 571 0.97

11 11 2.9e-05 0.0057 18.5 4.6 1 23 581 603 581 603 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00029	0.057	15.3	3.9	1	23	233	255	233	255	0.98
2	11	0.025	5	9.2	11.8	1	23	261	283	261	283	0.95
3	11	6.7e-05	0.013	17.3	6.6	1	23	289	311	289	311	0.99
4	11	0.00046	0.092	14.7	1.6	1	23	317	339	317	339	0.95
5	11	1e-06	0.0002	23.1	1.8	1	23	345	367	345	367	0.97
6	11	3e-05	0.006	18.4	1.1	1	23	373	395	373	395	0.97
7	11	0.00094	0.19	13.7	1.5	1	23	400	422	400	422	0.97
8	11	2.1e-05	0.0041	18.9	0.0	1	23	428	450	428	450	0.97
9	11	0.00011	0.021	16.7	0.1	2	23	462	483	461	483	0.96
10	11	1.8e-06	0.00036	22.3	2.0	1	23	549	571	549	571	0.97
11	11	2.9e-05	0.0057	18.5	4.6	1	23	581	603	581	603	0.97

Sequence Information

Coding Sequence: ATGTGTACTACACCTGGCAATGCGGGTGCAGGATTCGGTGGGTACGCTTGGTCCTTTAGCGGACCAGGGACAGAGACCCGGGAGAATGCCCAGAGCGAACTTGCGACGAATATCAGTTATGCCGTTAATAATAATCAGGATCAAGGATCCAGTCAAAAGATACAGGTTGACATCAAACCGGCAAAGGTTGCAGCTACCACTCACCGTCGTCCAATGTTTGCGATGAACGAGAGTTGTCAGCAAACACCCACTACGCATCATGGCCATACAGGGGGAGCGCATAATCAAACGACCCATGGTACTCACGTTCGCGCTAAAAAGCATCACGATGTATTTTCATTAACATGTGACAAAGGCGGATGCAATTGCGACGCGGCACATCCCACACCTCCACCTTCCTTGTTCTCCAACACCTTAGTTTTTACAACAGCCGATAAGCATGCCATGAGCAAGCACTTCATGACACCGCTTGGACCAATACAGCTTACGGCAGAAGAGTgcaatgaaattttaatgaagAGAGCAGCCGCTGCGTCTAATCAAGCCAACGCGGCGAATAATGTGGCGACGAGTCAGACGGACAGTACCGCTCATTTCGGGCATGTTCTCACCCATGTCAACACTACGCAAATCGAGACAAAAGTCAAACAGCAACAGGATATGGGAAGTCAGGTCCGTGTGCCGAAGGAACGACCGTATTCTTGTTCCGAATGCGGGAAATCCTTTCTGCTGAAACATCATCTTACGACGCACGCGAGAGTACACACTGGAGAACGGCCACACATTTGCGTTCATTGCGGCAAGAGTTTTGCGCACAAGCATTGTCTTCATACGCATCTGCTACTGCACAGCGCCGAAAGGCCGTACCAATGTCGCGAATGTAAAAAATCCTTTACATTGAAGCATCATCTTGTAACGCACACTCGCGTACACACTCGGGAACGGCCATTTGTCTGCCAGGAATGTGGAAGAGCATTTCCTCTGAAACGTCACTTAGTGACGCATAGTAAGTTTCATTCGGGAGAAAGACCTTATGTTTGCGAAGAATGTGGAGAATCTTTTTCTCAAAAAGATCATCTTACTATGCATTCACGCTTCCATGGCAGCCTACATCCATTTGTTTGCCATGATTGCGGTGCGACTTTCCAGAGGAAGTTTGAGTTGGTTAATCACGGTCGGCTGCATGGCAGAGTTCCACACTCGTGTACTGCTTGTGGAAAAGAATTTCTGCAGAAGAGAACACTTTTAGCTCATATGCGCTTACATACAGGTGAAACACCCTATGCTTGCACTGTTTGCGGAGAAGCATTTCCTCGGAAGGCAGACTTGGTAGCTCATTCAAAGATTCATAATAACAATACAAATACTGATGAGAAGTCTCTTACATGCAGGGAATGTGGATTGGATTTTCCAAATCGAGAAGCTCTAAATTTACATCAAAGGTTACATACTGGTGATCGAACACTTGTAACGGATCTTTGTGGACTAGCGGCCGCCTTCCAGCAAACTCCGGCACATTTCCTTACCCCAAACACTCCAACAACTCATCAGatGAACGGACCGATAGGAACGCCTAGTGTTAGTCATATGCACGGCGCAACTCAAACATCGCCGCCAGTGGGATCAGGACCAAAACCTAAGCCGCACATTTGTCCTGATTGCGGTCGTGGCTTTGCACAGAAGCATGGTTTGTCGCAACATCAACGACGTCACACAGACGGCAGCTGTCACATAAGATCCCACGTATGCGACAAATGCGGCAAAGCTTTCTTCCAAAAGAATCATTTGTTACTACATCAGCGTCAACATATGGATCCGCCACCTAGTATACTTAGACAGCAACAAAGACAAGCTGCCCAAGCTGCTGCTCAACAAgcgcagcagcagcagcaacaacagcagcagcaacaagcgcaacaacaacagcaggttcagcagcagcagcagcaagtGCAACAACAACAAGTACAGCAACCGCAGCAGCAGCAGACAATGACCGTCGATACAAAAACGATTCAACTGCAGGCAATACAGCAGCAAGTACAACAACAGGTACAACAACAGGtacagcagcaacagcagcagcagcaacaacagcagcagcagcagcagcaacaaacgcagcagcagcagcaagcATGTTCCGTGGACGCTAAAGCAATACAGTTGAATGTCACCATGTGA
Protein Sequence: MCTTPGNAGAGFGGYAWSFSGPGTETRENAQSELATNISYAVNNNQDQGSSQKIQVDIKPAKVAATTHRRPMFAMNESCQQTPTTHHGHTGGAHNQTTHGTHVRAKKHHDVFSLTCDKGGCNCDAAHPTPPPSLFSNTLVFTTADKHAMSKHFMTPLGPIQLTAEECNEILMKRAAAASNQANAANNVATSQTDSTAHFGHVLTHVNTTQIETKVKQQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHICVHCGKSFAHKHCLHTHLLLHSAERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPYVCEECGESFSQKDHLTMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRVPHSCTACGKEFLQKRTLLAHMRLHTGETPYACTVCGEAFPRKADLVAHSKIHNNNTNTDEKSLTCRECGLDFPNREALNLHQRLHTGDRTLVTDLCGLAAAFQQTPAHFLTPNTPTTHQMNGPIGTPSVSHMHGATQTSPPVGSGPKPKPHICPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQQQQQQQQAQQQQQVQQQQQQVQQQQVQQPQQQQTMTVDTKTIQLQAIQQQVQQQVQQQVQQQQQQQQQQQQQQQQQTQQQQQACSVDAKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899020;
90% Identity: iTF_00684308;
80% Identity: -