Fase003394.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Formica aserva
Gene Symbol
-
Assembly
GCA_037039905.1
Location
JAXRKO010000002.1:10834763-10838005[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2.5e-05 0.0051 18.7 1.4 1 23 99 121 99 121 0.98
2 18 1.5e-06 0.0003 22.5 0.6 1 23 127 149 127 149 0.99
3 18 1.6e-05 0.0031 19.3 0.6 1 23 154 177 154 177 0.97
4 18 2e-05 0.0039 19.0 0.4 1 23 183 205 183 205 0.97
5 18 8.5e-06 0.0017 20.1 0.2 1 23 211 234 211 234 0.97
6 18 0.00014 0.028 16.3 1.6 1 23 244 266 244 266 0.95
7 18 1.9e-05 0.0038 19.0 1.3 1 23 270 292 270 292 0.95
8 18 1.3e-05 0.0026 19.6 0.2 1 23 298 320 298 320 0.99
9 18 1.1e-06 0.00022 22.9 1.0 1 23 326 348 326 348 0.99
10 18 0.0025 0.49 12.4 1.0 3 23 477 498 476 498 0.96
11 18 0.011 2.2 10.4 5.7 1 23 503 525 503 525 0.95
12 18 0.0029 0.58 12.2 3.2 1 23 531 554 531 554 0.95
13 18 0.0001 0.021 16.7 0.2 1 23 561 584 561 584 0.97
14 18 0.067 13 7.9 1.5 1 21 589 609 589 610 0.87
15 18 0.7 1.4e+02 4.7 3.0 1 23 618 640 618 640 0.97
16 18 0.29 58 5.9 0.7 1 23 644 667 644 667 0.94
17 18 0.012 2.5 10.2 0.4 2 15 672 685 671 694 0.78
18 18 1.3e-06 0.00025 22.8 1.4 1 23 700 722 700 722 0.98

Sequence Information

Coding Sequence
ATGTTGATTCGATATTTAATCCTCGAGGTCCGAGTGTTGATAGGACGGGATGCCAAGGCTGATAATGAAGAAGAATCTGAAGAGCACAACCACGCGCGTTTAGAAATAGATTCCAATGCAATGATCCAAGATATATTGAACATAAGCggaaaaaatgaagaagagaaAGCAACGTCGAAGTCTTCTGAGGTGATGCGTCGAGAAGCGTGTATTTCATGTCGCGAGAACGACATCGGAAACACCTCGATTAATGCGGGGGAAAAAACAATCGGGAGAAAAGAGGAACGGACGACATACGAATGTTCCGCGTGTGGAGCGCATTTTACTCGGCAAGGAGAGTTCAAACGTCACATGGTGAAGCACAGCGATGTACGTCCGTACAAGTGTACCGTTTGCGAGCGAGCCTTCAAACGTTCGTCGGAAGTGATGAGTCACATGCAAATCCACAGCGGCGTCACGTACGCCTGCGAAACGTGCGGTTTCACCACGACGAATAAAGTTTCTCTGAGAACTCACATCCGACGAGTGCATCGGCGCGATTTTCGATATCGTTGCGAGCAGTGCGGCAAGGGGTTTATGTCGAATTACGATCTCGAGGATCACAAGGCGAGCCACCTGGAGGCCAAGACCTTCGTCTGCGAGTACTGCGGGAATGCTTATTCGCAGAAATCGTACCTGGTCGCACACAAGCGTGTGATTCACCGGATACGGAAGACCGCGCCGAAGCAGCACCGGTGCGAGCTTTGCAGCAAGAGCTTCGCTTCGGAGTATAGTCTTCGTAATCACGCGAGTTTACACTCGCAGAGATTCCTCTGCGCCCAGTGCGGTAAAGAGTTCGCGACGAATCACGCGCTAAAGCTGCATACTCGCATGCACACCGGTGAGCGGCCCTATCAGTGCAAGCTGTGCGCGAAAGCCTTCGCGAGATCCGCGGCTCTTAGGGTGCACAAGCTCACGCATACGGGCGAGAGACCGTACGTATGCGATCTCTGCGGACAGAGTTTCACGCAACGCAGCAGCATGATGGTGCATCGTCGCAAACATCCCGGCAGTCATCCACCGCCGCCACCGTTGCTGCTCAGTCGACTTGACTTTGATACCCAAAAGGGACGATGGACCACAGTGTGGGATGGTGAAAAGTATCGGAAAGTGATTGTACCGTATGATGCCGTCGTACTAGAGACAACTTATAAAAAGAATGTGAAAAAACGCGATGGATCAGCAAACAAATACACAGAGAATAAACGGCGACAACGAACGaaagagaagaataaaaagaaaaagcctAGTACAACGatagaagtaaatcaaaatgTATCGgataaagaaaagataaagTCTATAACGGAAATATTATTCTCTGAAGACATTGCAAAGAACGAAAAGAAGGAAGATGTGGATCGAATTTTAGATGAAGTGCGGAATGCGTGTCCGTTGTGCTTAAAGCGTTTTGATCATGAGAAGCGTTTGAGAAGACATATTATAGTGAGCCATCAGAAAAGAGCATACAAGTGTGACAAGTGCCGCGCGTCTTATTATACCAAACAAAATCTGGAAAAACATTGTAAAAGTCATAGTGACGATTACTTCTTCGAGTGTGACGTATGTCACTTGAAGTATAAGCGCGAGATAACGTTGAAGCATCATCAAGTGCGAGCACATAGTGACATTGCTGCTCAGTTTATTTGCGATTCCTGCGGTCAGTCATTTAAAGTAAGGGTGGATCTTCTTGTACATATCAATAGGAAGCACAATACCAACATTCATATATGTCGATATTGCGGAAAGTCCGTGACAGATCTCAGCCACGAATGGAAACATAAGAAACGTGCCGAGATGGCCAGCTTGAAGTTTTCGTGCCATTTATGTATCAGAAAATTTCAGAATCAGACTCGTCTCGACAATCATTTATTGTTGCACAAGCAGGGTTATAAGTGCATCGAGTGTAATGTGATTGTGACTTCGTCAAGACAATTAAAGTATCATAAGGATCGGATGCACAAGCCGGGCACGACCTGTCCGATTTGCAAGAAAGTGTTTGTGTCAAGCGgtaacaatttttatcaacATGTCCTTACGCATGCTGGTATCAGACCTTATAACTGTGATATCTGCGGCGAAGATTTTACCCAGCGCTCCAGTCTCTTCCGGCATCGAAAAAATCATCCCGGTCCTCTTCCGTCTTATACATCGCAGATTCCTATCGCCGCTTTAGCTAAGAACGTTTTACAGAAgcttttaaaacaataa
Protein Sequence
MLIRYLILEVRVLIGRDAKADNEEESEEHNHARLEIDSNAMIQDILNISGKNEEEKATSKSSEVMRREACISCRENDIGNTSINAGEKTIGRKEERTTYECSACGAHFTRQGEFKRHMVKHSDVRPYKCTVCERAFKRSSEVMSHMQIHSGVTYACETCGFTTTNKVSLRTHIRRVHRRDFRYRCEQCGKGFMSNYDLEDHKASHLEAKTFVCEYCGNAYSQKSYLVAHKRVIHRIRKTAPKQHRCELCSKSFASEYSLRNHASLHSQRFLCAQCGKEFATNHALKLHTRMHTGERPYQCKLCAKAFARSAALRVHKLTHTGERPYVCDLCGQSFTQRSSMMVHRRKHPGSHPPPPPLLLSRLDFDTQKGRWTTVWDGEKYRKVIVPYDAVVLETTYKKNVKKRDGSANKYTENKRRQRTKEKNKKKKPSTTIEVNQNVSDKEKIKSITEILFSEDIAKNEKKEDVDRILDEVRNACPLCLKRFDHEKRLRRHIIVSHQKRAYKCDKCRASYYTKQNLEKHCKSHSDDYFFECDVCHLKYKREITLKHHQVRAHSDIAAQFICDSCGQSFKVRVDLLVHINRKHNTNIHICRYCGKSVTDLSHEWKHKKRAEMASLKFSCHLCIRKFQNQTRLDNHLLLHKQGYKCIECNVIVTSSRQLKYHKDRMHKPGTTCPICKKVFVSSGNNFYQHVLTHAGIRPYNCDICGEDFTQRSSLFRHRKNHPGPLPSYTSQIPIAALAKNVLQKLLKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01245373;
90% Identity
-
80% Identity
-