Fase034451.1
Basic Information
- Insect
- Formica aserva
- Gene Symbol
- -
- Assembly
- GCA_037039905.1
- Location
- JAXRKO010000050.1:159670-159972[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-13 6.4e-10 40.1 0.0 1 39 16 53 16 57 0.89 2 2 2.2 6.2e+03 -1.5 0.0 23 30 82 89 80 91 0.79
Sequence Information
- Coding Sequence
- ATGCCATCGGACTATAAAAGAAAGGACACAAATCGTAGAAATTACACTGAAGAAAATTTGAGGCGTGCGATTGAAGCTGTCAGAAGCGGTTCATCTGTTAATGGTGCCTCGCAGACTTATGGTATCCCTAGAAAAACgcttgaaaagaaattaaagaagaatgtTTTCACAATTGGTAAATTGGGACCGGACAGCATGTTGGATGAAGCTAATGAAAGCAAATTAGTGCTACACATTAAAAAGGCTCAAAAATACGGTTTCCCTATGACTGTGCCGGATATAACTTACTTATTATTTCGCTGA
- Protein Sequence
- MPSDYKRKDTNRRNYTEENLRRAIEAVRSGSSVNGASQTYGIPRKTLEKKLKKNVFTIGKLGPDSMLDEANESKLVLHIKKAQKYGFPMTVPDITYLLFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -